Wall clock time and date at job start Mon Mar 30 2020 02:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.49641 * 2 1 4 4 C 1.53040 * 109.49730 * 120.09878 * 2 1 3 5 5 C 1.53041 * 109.53822 * 181.31434 * 4 2 1 6 6 H 1.09001 * 109.51934 * 58.60838 * 5 4 2 7 7 C 1.53000 * 109.49533 * 178.68305 * 5 4 2 8 8 O 1.42903 * 109.46726 * 184.83921 * 7 5 4 9 9 C 1.53183 * 109.31239 * 298.63769 * 5 4 2 10 10 N 1.46923 * 108.77902 * 54.63377 * 9 5 4 11 11 S 1.65598 * 120.62954 * 126.36616 * 10 9 5 12 12 O 1.42106 * 104.27787 * 206.07040 * 11 10 9 13 13 O 1.42097 * 104.28162 * 333.92888 * 11 10 9 14 14 C 1.81404 * 104.44942 * 90.00587 * 11 10 9 15 15 C 1.50701 * 109.46943 * 180.02562 * 14 11 10 16 16 H 1.07999 * 120.00561 * 359.97438 * 15 14 11 17 17 C 1.37879 * 119.99549 * 179.97438 * 15 14 11 18 18 N 1.31515 * 119.99831 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00392 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.46904 * 90.00072 * 19 17 15 21 21 H 1.48491 * 109.47232 * 210.00195 * 19 17 15 22 22 H 1.48502 * 109.47080 * 330.00337 * 19 17 15 23 23 C 1.46921 * 118.73736 * 306.39202 * 10 9 5 24 24 H 1.08995 * 109.47677 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47322 * 300.06548 * 1 2 3 26 26 H 1.09001 * 109.47026 * 60.06068 * 1 2 3 27 27 H 1.09003 * 109.46124 * 61.29541 * 4 2 1 28 28 H 1.09002 * 109.46081 * 301.34110 * 4 2 1 29 29 H 1.09002 * 109.47398 * 304.84165 * 7 5 4 30 30 H 1.09001 * 109.47194 * 64.84345 * 7 5 4 31 31 H 0.96700 * 113.99509 * 180.02562 * 8 7 5 32 32 H 1.09006 * 109.58503 * 174.42085 * 9 5 4 33 33 H 1.08996 * 109.59048 * 294.84560 * 9 5 4 34 34 H 1.08999 * 109.46647 * 299.99387 * 14 11 10 35 35 H 1.08996 * 109.47238 * 59.99539 * 14 11 10 36 36 H 0.96998 * 119.99920 * 179.97438 * 18 17 15 37 37 H 1.09008 * 109.58708 * 173.39374 * 23 10 9 38 38 H 1.08994 * 109.58783 * 293.81655 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7235 1.2481 5 6 3.5708 -0.6955 1.2658 6 1 3.9163 0.3383 1.2545 7 6 4.0797 -1.3902 2.5304 8 8 5.5014 -1.2654 2.6031 9 6 4.1052 -1.4267 0.0303 10 7 3.5045 -0.8288 -1.1698 11 16 4.4587 -0.2834 -2.4085 12 8 3.6758 0.7220 -3.0375 13 8 5.6953 0.0343 -1.7847 14 6 4.6471 -1.7194 -3.5008 15 6 5.5072 -1.3442 -4.6800 16 1 5.9008 -0.3420 -4.7642 17 6 5.7917 -2.2805 -5.6513 18 7 6.5418 -1.9529 -6.6807 19 14 5.1116 -4.0141 -5.5054 20 1 3.7884 -4.0849 -6.1760 21 1 6.0465 -4.9688 -6.1531 22 1 4.9590 -4.3669 -4.0710 23 6 2.0413 -0.7234 -1.2498 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5149 0.8894 26 1 -0.3633 0.5129 -0.8905 27 1 1.6967 -1.7577 1.2348 28 1 1.6581 -0.2252 2.1388 29 1 3.6288 -0.9251 3.4070 30 1 3.8087 -2.4456 2.4992 31 1 5.8936 -1.6842 3.3815 32 1 5.1895 -1.3246 -0.0141 33 1 3.8375 -2.4818 0.0859 34 1 5.1194 -2.5340 -2.9517 35 1 3.6664 -2.0392 -3.8529 36 1 6.7423 -2.6117 -7.3639 37 1 1.7637 -0.1572 -2.1389 38 1 1.6052 -1.7211 -1.2986 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563435457.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:04 Heat of formation + Delta-G solvation = -169.288591 kcal Electronic energy + Delta-G solvation = -20819.062968 eV Core-core repulsion = 17593.714579 eV Total energy + Delta-G solvation = -3225.348389 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.08314 -38.13277 -37.47035 -36.88356 -35.34580 -34.38476 -33.36675 -31.78077 -27.69883 -26.63832 -25.60809 -24.83050 -21.73880 -21.12426 -19.72496 -19.54468 -18.29323 -18.14460 -17.43309 -17.27830 -16.25459 -16.10714 -15.85890 -15.20061 -15.03221 -14.73265 -14.62426 -14.46970 -14.27560 -13.61565 -13.57144 -13.39887 -13.23316 -13.08224 -12.86136 -12.63989 -12.63792 -12.29153 -12.23893 -11.89124 -11.87416 -11.70361 -11.47434 -11.36496 -11.20936 -10.95123 -10.81359 -9.82235 -8.46435 -6.63782 -0.55605 1.31910 1.35705 1.47303 1.91360 2.26793 2.84724 2.99164 3.31119 3.34300 3.75066 3.88161 3.95314 4.01127 4.27607 4.34057 4.43911 4.49590 4.52045 4.60836 4.67862 4.71874 4.76855 4.89260 4.90108 4.92728 5.06912 5.17377 5.20609 5.29012 5.31215 5.46027 5.54904 5.75119 5.79477 6.40416 7.02786 7.04920 8.69154 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020358 B = 0.005918 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.026805 B = 4730.268250 C = 5133.343714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 H 0.052 0.948 4 C -0.095 4.095 5 C -0.104 4.104 6 H 0.052 0.948 7 C 0.084 3.916 8 O -0.600 6.600 9 C 0.119 3.881 10 N -1.002 6.002 11 S 2.618 3.382 12 O -1.001 7.001 13 O -1.003 7.003 14 C -0.479 4.479 15 C -0.559 4.559 16 H 0.035 0.965 17 C 0.023 3.977 18 N -0.933 5.933 19 Si 0.956 3.044 20 H -0.254 1.254 21 H -0.276 1.276 22 H -0.232 1.232 23 C 0.109 3.891 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.396 0.604 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.277 0.723 37 H 0.078 0.922 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.856 -5.386 20.858 25.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.125 4.125 3 H 0.071 0.929 4 C -0.132 4.132 5 C -0.125 4.125 6 H 0.070 0.930 7 C 0.006 3.994 8 O -0.409 6.409 9 C -0.006 4.006 10 N -0.840 5.840 11 S 2.718 3.282 12 O -0.991 6.991 13 O -0.994 6.994 14 C -0.612 4.612 15 C -0.598 4.598 16 H 0.053 0.947 17 C -0.178 4.178 18 N -0.571 5.571 19 Si 0.776 3.224 20 H -0.179 1.179 21 H -0.201 1.201 22 H -0.155 1.155 23 C -0.015 4.015 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.246 0.754 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.513 -4.213 20.063 24.553 hybrid contribution 0.515 -0.885 -0.399 1.099 sum -12.998 -5.098 19.665 24.117 Atomic orbital electron populations 1.21734 0.92219 1.03225 1.02477 1.21461 0.97390 0.99025 0.94668 0.92927 1.21498 0.91690 1.02383 0.97652 1.21538 0.97333 0.99640 0.93956 0.92989 1.22239 0.80689 1.00135 0.96294 1.86542 1.21593 1.81661 1.51062 1.21609 0.97924 0.97848 0.83177 1.57654 1.16709 1.78637 1.30997 1.04451 0.72561 0.77165 0.74070 1.93425 1.70634 1.57152 1.77895 1.93440 1.46540 1.84101 1.75274 1.28283 1.06230 1.16715 1.09999 1.20366 1.33624 0.99068 1.06717 0.94710 1.26094 0.93808 1.04587 0.93357 1.70028 1.37564 1.37647 1.11815 0.85581 0.79152 0.76667 0.81038 1.17857 1.20097 1.15487 1.21834 0.77498 1.02459 0.99729 0.90734 0.91127 0.92826 0.89180 0.89652 0.91395 0.91156 0.75369 0.91018 0.88805 0.87723 0.87552 0.91388 0.90357 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.20 71.98 0.66 -1.32 16 2 C -0.11 -2.13 2.87 -10.72 -0.03 -2.16 16 3 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 4 C -0.09 -1.50 4.45 30.62 0.14 -1.36 16 5 C -0.10 -2.31 2.58 -10.72 -0.03 -2.34 16 6 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 7 C 0.08 1.36 6.43 71.98 0.46 1.82 16 8 O -0.60 -12.60 13.30 -148.98 -1.98 -14.58 16 9 C 0.12 3.27 5.55 86.36 0.48 3.75 16 10 N -1.00 -31.92 3.22 -513.10 -1.65 -33.57 16 11 S 2.62 115.86 5.37 -56.49 -0.30 115.55 16 12 O -1.00 -49.29 16.59 -127.65 -2.12 -51.41 16 13 O -1.00 -51.07 16.59 -127.65 -2.12 -53.18 16 14 C -0.48 -21.94 5.00 71.24 0.36 -21.58 16 15 C -0.56 -33.12 9.68 25.60 0.25 -32.87 16 16 H 0.03 2.32 7.96 -2.91 -0.02 2.29 16 17 C 0.02 1.33 5.47 84.66 0.46 1.79 16 18 N -0.93 -58.19 13.96 21.45 0.30 -57.89 16 19 Si 0.96 41.56 27.47 68.60 1.88 43.45 16 20 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 21 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.23 -8.86 6.54 99.48 0.65 -8.21 16 23 C 0.11 2.74 5.71 86.36 0.49 3.24 16 24 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.40 4.16 9.12 -74.06 -0.68 3.48 16 32 H 0.07 2.41 6.70 -2.38 -0.02 2.40 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.10 4.33 7.20 -2.39 -0.02 4.31 16 35 H 0.11 4.26 7.57 -2.39 -0.02 4.24 16 36 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 37 H 0.08 2.23 6.86 -2.38 -0.02 2.21 16 38 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -82.64 317.47 -2.43 -85.08 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.31 Total: 17.59 kcal Atomic # 6 Polarization: -54.28 SS G_CDS: 3.24 Total: -51.04 kcal Atomic # 7 Polarization: -90.11 SS G_CDS: -1.35 Total: -91.46 kcal Atomic # 8 Polarization: -112.95 SS G_CDS: -6.22 Total: -119.17 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.88 Total: 43.45 kcal Atomic # 16 Polarization: 115.86 SS G_CDS: -0.30 Total: 115.55 kcal Total: -82.64 -2.43 -85.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563435457.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.212 kcal (2) G-P(sol) polarization free energy of solvation -82.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds