Wall clock time and date at job start Mon Mar 30 2020 02:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.52330 * 2 1 4 4 C 1.53046 * 109.49769 * 239.92528 * 2 1 3 5 5 C 1.53036 * 109.53927 * 178.68065 * 4 2 1 6 6 H 1.09002 * 109.49886 * 301.41083 * 5 4 2 7 7 O 1.42902 * 109.49428 * 181.34578 * 5 4 2 8 8 C 1.53187 * 109.33909 * 61.37961 * 5 4 2 9 9 N 1.46996 * 108.74195 * 305.37661 * 8 5 4 10 10 S 1.65603 * 120.61836 * 233.57055 * 9 8 5 11 11 O 1.42098 * 104.27324 * 26.09209 * 10 9 8 12 12 O 1.42095 * 104.27504 * 153.94803 * 10 9 8 13 13 C 1.81401 * 104.44806 * 270.01971 * 10 9 8 14 14 C 1.53001 * 109.46984 * 179.97438 * 13 10 9 15 15 C 1.50697 * 109.47046 * 179.97438 * 14 13 10 16 16 H 1.07999 * 120.00055 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99974 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99731 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00085 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46890 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47148 * 119.99864 * 19 17 15 22 22 H 1.48500 * 109.47349 * 240.00326 * 19 17 15 23 23 C 1.46935 * 118.75211 * 53.59038 * 9 8 5 24 24 H 1.09001 * 109.46955 * 180.08185 * 1 2 3 25 25 H 1.09004 * 109.46539 * 300.07449 * 1 2 3 26 26 H 1.08995 * 109.47403 * 60.07760 * 1 2 3 27 27 H 1.08997 * 109.45653 * 58.65592 * 4 2 1 28 28 H 1.09003 * 109.44279 * 298.69801 * 4 2 1 29 29 H 0.96703 * 113.99825 * 180.02562 * 7 5 4 30 30 H 1.09004 * 109.58908 * 65.13475 * 8 5 4 31 31 H 1.09007 * 109.58837 * 185.55836 * 8 5 4 32 32 H 1.08995 * 109.47082 * 300.00080 * 13 10 9 33 33 H 1.09006 * 109.47210 * 59.99832 * 13 10 9 34 34 H 1.09002 * 109.47028 * 299.99917 * 14 13 10 35 35 H 1.08998 * 109.47038 * 59.99602 * 14 13 10 36 36 H 0.96998 * 119.99503 * 180.02562 * 18 17 15 37 37 H 1.09001 * 109.58491 * 186.60872 * 23 9 8 38 38 H 1.08995 * 109.58704 * 66.18186 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7230 -1.2485 5 6 3.5708 -0.6949 -1.2662 6 1 3.9159 0.3390 -1.2542 7 8 4.0461 -1.3427 -2.4480 8 6 4.1060 -1.4268 -0.0315 9 7 3.5047 -0.8291 1.1694 10 16 4.4589 -0.2852 2.4088 11 8 5.6956 0.0327 1.7854 12 8 3.6762 0.7198 3.0384 13 6 4.6467 -1.7223 3.4997 14 6 5.5198 -1.3428 4.6974 15 6 5.6753 -2.5365 5.6039 16 1 5.1995 -3.4724 5.3509 17 6 6.4261 -2.4342 6.7559 18 7 7.0060 -1.2946 7.0637 19 14 6.6183 -3.9137 7.8800 20 1 5.8726 -5.0661 7.3132 21 1 8.0568 -4.2640 7.9955 22 1 6.0788 -3.5873 9.2244 23 6 2.0414 -0.7239 1.2495 24 1 -0.3633 -1.0277 0.0015 25 1 -0.3632 0.5150 0.8894 26 1 -0.3634 0.5126 -0.8906 27 1 1.6581 -0.2243 -2.1389 28 1 1.6967 -1.7572 -1.2352 29 1 5.0098 -1.3623 -2.5252 30 1 3.8382 -2.4820 -0.0875 31 1 5.1904 -1.3247 0.0124 32 1 3.6659 -2.0422 3.8514 33 1 5.1188 -2.5366 2.9498 34 1 6.5006 -1.0233 4.3453 35 1 5.0481 -0.5284 5.2473 36 1 7.5345 -1.2228 7.8739 37 1 1.7639 -0.1580 2.1388 38 1 1.6054 -1.7216 1.2979 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569502878.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:33 Heat of formation + Delta-G solvation = -141.262601 kcal Electronic energy + Delta-G solvation = -20461.191974 eV Core-core repulsion = 17237.058883 eV Total energy + Delta-G solvation = -3224.133091 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.26691 -36.78212 -36.17937 -35.49352 -33.91886 -33.58491 -31.18672 -30.34946 -27.00904 -25.65551 -24.59592 -22.18165 -21.56383 -20.32665 -18.51552 -17.65419 -17.26335 -16.57171 -16.17120 -15.54815 -15.12575 -14.88250 -14.74987 -14.55576 -13.79154 -13.49363 -13.42875 -13.07004 -12.54170 -12.37987 -12.22041 -12.05635 -11.79754 -11.77387 -11.64399 -11.52832 -11.11542 -11.02063 -10.98705 -10.82073 -10.53806 -10.42407 -10.41412 -10.33757 -9.79024 -9.33535 -8.78024 -8.53158 -6.15035 -4.20706 0.68418 2.92002 3.23676 3.31040 3.34454 3.92816 4.23809 4.35914 4.43813 4.58649 4.70325 4.76025 4.85824 5.02567 5.09289 5.20301 5.26051 5.41465 5.44649 5.58923 5.60562 5.62859 5.69049 5.71186 5.82902 5.88623 5.95024 6.16159 6.19079 6.45303 6.56072 7.26686 7.32409 7.44573 7.78232 8.14725 8.82998 9.44354 10.96054 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028887 B = 0.004356 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.061098 B = 6426.084323 C = 6618.847841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 H 0.078 0.922 4 C -0.104 4.104 5 C 0.094 3.906 6 H 0.061 0.939 7 O -0.566 6.566 8 C 0.088 3.912 9 N -1.004 6.004 10 S 2.589 3.411 11 O -0.965 6.965 12 O -0.962 6.962 13 C -0.588 4.588 14 C 0.027 3.973 15 C -0.520 4.520 16 H 0.062 0.938 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.119 3.881 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.381 0.619 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.265 0.735 37 H 0.098 0.902 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.348 -0.103 -15.927 18.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 H 0.096 0.904 4 C -0.142 4.142 5 C 0.033 3.967 6 H 0.079 0.921 7 O -0.371 6.371 8 C -0.038 4.038 9 N -0.841 5.841 10 S 2.688 3.312 11 O -0.955 6.955 12 O -0.952 6.952 13 C -0.721 4.721 14 C -0.012 4.012 15 C -0.560 4.560 16 H 0.080 0.920 17 C -0.145 4.145 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.007 4.007 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.228 0.772 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.116 0.884 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.539 0.809 -15.868 19.066 hybrid contribution 0.675 -1.372 0.922 1.786 sum -9.864 -0.563 -14.946 17.917 Atomic orbital electron populations 1.21756 0.93969 1.02215 1.02278 1.21437 0.96134 1.00344 0.94347 0.90355 1.21500 0.92983 1.01736 0.97953 1.22104 0.95283 0.95515 0.83754 0.92124 1.86487 1.27157 1.81314 1.42189 1.22119 0.99136 0.97817 0.84760 1.57933 1.16114 1.78516 1.31505 1.05754 0.73338 0.77707 0.74353 1.93521 1.44135 1.83391 1.74469 1.93529 1.69891 1.55347 1.76459 1.30485 1.10272 1.17587 1.13768 1.18978 0.93728 0.98889 0.89580 1.21039 1.32103 0.96658 1.06162 0.91986 1.25072 0.95296 0.96290 0.97817 1.69966 1.32708 1.24640 1.25535 0.86408 0.77992 0.82400 0.80460 1.19640 1.20773 1.20759 1.21551 0.78952 1.00884 0.99265 0.92322 0.91936 0.92314 0.91143 0.91012 0.77160 0.90757 0.88583 0.86204 0.86274 0.94869 0.94836 0.92558 0.88367 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.20 37.16 0.34 -0.79 16 2 C -0.10 -1.02 2.87 -90.50 -0.26 -1.28 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.10 -1.03 4.82 -26.69 -0.13 -1.16 16 5 C 0.09 1.02 3.62 -26.62 -0.10 0.92 16 6 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 7 O -0.57 -5.77 13.32 -35.23 -0.47 -6.23 16 8 C 0.09 1.02 6.06 -3.67 -0.02 1.00 16 9 N -1.00 -13.48 3.22 -113.46 -0.37 -13.85 16 10 S 2.59 46.02 5.45 -107.50 -0.59 45.43 16 11 O -0.96 -19.50 16.59 -57.54 -0.95 -20.45 16 12 O -0.96 -19.52 16.59 -57.54 -0.95 -20.47 16 13 C -0.59 -11.17 6.12 37.16 0.23 -10.94 16 14 C 0.03 0.69 4.98 -27.88 -0.14 0.56 16 15 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 19 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 C 0.12 1.36 5.72 -3.71 -0.02 1.34 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.38 2.47 9.08 45.56 0.41 2.88 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 1.14 6.86 -51.92 -0.36 0.78 16 32 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 33 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 34 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.10 1.19 6.86 -51.93 -0.36 0.84 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 321.97 15.07 4.85 4.85 Total: -1.00 -34.49 321.97 -8.61 -43.10 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.34 Total: 0.67 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: -0.51 Total: -23.47 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.37 Total: -39.49 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -2.38 Total: -47.16 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 46.02 SS G_CDS: -0.59 Total: 45.43 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.49 -8.61 -43.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569502878.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.166 kcal (2) G-P(sol) polarization free energy of solvation -34.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds