Wall clock time and date at job start Mon Mar 30 2020 02:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.52330 * 2 1 4 4 C 1.53046 * 109.49769 * 239.92528 * 2 1 3 5 5 C 1.53036 * 109.53927 * 178.68065 * 4 2 1 6 6 H 1.09002 * 109.49886 * 301.41083 * 5 4 2 7 7 O 1.42902 * 109.49428 * 181.34578 * 5 4 2 8 8 C 1.53187 * 109.33909 * 61.37961 * 5 4 2 9 9 N 1.46996 * 108.74195 * 305.37661 * 8 5 4 10 10 S 1.65603 * 120.61836 * 233.57055 * 9 8 5 11 11 O 1.42098 * 104.27324 * 26.09209 * 10 9 8 12 12 O 1.42095 * 104.27504 * 153.94803 * 10 9 8 13 13 C 1.81401 * 104.44806 * 270.01971 * 10 9 8 14 14 C 1.53001 * 109.46984 * 179.97438 * 13 10 9 15 15 C 1.50697 * 109.47046 * 179.97438 * 14 13 10 16 16 H 1.07999 * 120.00055 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99974 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99731 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00085 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46890 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47148 * 119.99864 * 19 17 15 22 22 H 1.48500 * 109.47349 * 240.00326 * 19 17 15 23 23 C 1.46935 * 118.75211 * 53.59038 * 9 8 5 24 24 H 1.09001 * 109.46955 * 180.08185 * 1 2 3 25 25 H 1.09004 * 109.46539 * 300.07449 * 1 2 3 26 26 H 1.08995 * 109.47403 * 60.07760 * 1 2 3 27 27 H 1.08997 * 109.45653 * 58.65592 * 4 2 1 28 28 H 1.09003 * 109.44279 * 298.69801 * 4 2 1 29 29 H 0.96703 * 113.99825 * 180.02562 * 7 5 4 30 30 H 1.09004 * 109.58908 * 65.13475 * 8 5 4 31 31 H 1.09007 * 109.58837 * 185.55836 * 8 5 4 32 32 H 1.08995 * 109.47082 * 300.00080 * 13 10 9 33 33 H 1.09006 * 109.47210 * 59.99832 * 13 10 9 34 34 H 1.09002 * 109.47028 * 299.99917 * 14 13 10 35 35 H 1.08998 * 109.47038 * 59.99602 * 14 13 10 36 36 H 0.96998 * 119.99503 * 180.02562 * 18 17 15 37 37 H 1.09001 * 109.58491 * 186.60872 * 23 9 8 38 38 H 1.08995 * 109.58704 * 66.18186 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7230 -1.2485 5 6 3.5708 -0.6949 -1.2662 6 1 3.9159 0.3390 -1.2542 7 8 4.0461 -1.3427 -2.4480 8 6 4.1060 -1.4268 -0.0315 9 7 3.5047 -0.8291 1.1694 10 16 4.4589 -0.2852 2.4088 11 8 5.6956 0.0327 1.7854 12 8 3.6762 0.7198 3.0384 13 6 4.6467 -1.7223 3.4997 14 6 5.5198 -1.3428 4.6974 15 6 5.6753 -2.5365 5.6039 16 1 5.1995 -3.4724 5.3509 17 6 6.4261 -2.4342 6.7559 18 7 7.0060 -1.2946 7.0637 19 14 6.6183 -3.9137 7.8800 20 1 5.8726 -5.0661 7.3132 21 1 8.0568 -4.2640 7.9955 22 1 6.0788 -3.5873 9.2244 23 6 2.0414 -0.7239 1.2495 24 1 -0.3633 -1.0277 0.0015 25 1 -0.3632 0.5150 0.8894 26 1 -0.3634 0.5126 -0.8906 27 1 1.6581 -0.2243 -2.1389 28 1 1.6967 -1.7572 -1.2352 29 1 5.0098 -1.3623 -2.5252 30 1 3.8382 -2.4820 -0.0875 31 1 5.1904 -1.3247 0.0124 32 1 3.6659 -2.0422 3.8514 33 1 5.1188 -2.5366 2.9498 34 1 6.5006 -1.0233 4.3453 35 1 5.0481 -0.5284 5.2473 36 1 7.5345 -1.2228 7.8739 37 1 1.7639 -0.1580 2.1388 38 1 1.6054 -1.7216 1.2979 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569502878.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:32 Heat of formation + Delta-G solvation = -168.497268 kcal Electronic energy + Delta-G solvation = -20462.372958 eV Core-core repulsion = 17237.058883 eV Total energy + Delta-G solvation = -3225.314075 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.13835 -38.29416 -37.11514 -36.96634 -35.91068 -34.49705 -33.14127 -31.20090 -27.77385 -27.60931 -25.61189 -23.50524 -22.96596 -21.20846 -19.83246 -19.10754 -18.41962 -18.05653 -17.38601 -17.07093 -16.55516 -16.10607 -16.02141 -15.63322 -15.13769 -14.81020 -14.44124 -14.28074 -13.87622 -13.74101 -13.43489 -13.29959 -13.22390 -12.96266 -12.80109 -12.79843 -12.74422 -12.68918 -12.27901 -12.12280 -11.82579 -11.77620 -11.63026 -11.40221 -11.22541 -11.10218 -10.66898 -9.89125 -8.27514 -6.41777 -0.76752 1.40706 1.41150 1.54545 1.66442 2.37217 2.80849 3.05876 3.08124 3.21813 3.66347 3.81310 3.91123 3.93591 4.04539 4.11564 4.26064 4.26524 4.44331 4.66870 4.70642 4.73263 4.79150 4.83340 4.96892 5.03374 5.14858 5.21365 5.24559 5.25598 5.37653 5.44133 5.58420 5.66988 6.04550 6.72116 6.81398 7.28786 8.85008 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028887 B = 0.004356 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.061098 B = 6426.084323 C = 6618.847841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.063 0.937 4 C -0.101 4.101 5 C 0.096 3.904 6 H 0.049 0.951 7 O -0.572 6.572 8 C 0.082 3.918 9 N -0.993 5.993 10 S 2.613 3.387 11 O -0.993 6.993 12 O -0.991 6.991 13 C -0.586 4.586 14 C 0.020 3.980 15 C -0.539 4.539 16 H 0.075 0.925 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.975 3.025 20 H -0.256 1.256 21 H -0.278 1.278 22 H -0.278 1.278 23 C 0.108 3.892 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.396 0.604 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.006 0.994 35 H 0.006 0.994 36 H 0.268 0.732 37 H 0.088 0.912 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.822 -2.155 -17.003 20.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.082 0.918 4 C -0.139 4.139 5 C 0.035 3.965 6 H 0.067 0.933 7 O -0.379 6.379 8 C -0.043 4.043 9 N -0.833 5.833 10 S 2.711 3.289 11 O -0.983 6.983 12 O -0.981 6.981 13 C -0.719 4.719 14 C -0.019 4.019 15 C -0.578 4.578 16 H 0.094 0.906 17 C -0.202 4.202 18 N -0.574 5.574 19 Si 0.798 3.202 20 H -0.179 1.179 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.016 4.016 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.246 0.754 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.024 0.976 35 H 0.025 0.975 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.005 -1.254 -16.947 20.806 hybrid contribution 1.115 -0.703 1.154 1.751 sum -10.890 -1.956 -15.793 19.283 Atomic orbital electron populations 1.21739 0.92094 1.03224 1.02770 1.21427 0.97618 0.99317 0.93717 0.91821 1.21499 0.92111 1.02298 0.97964 1.22041 0.96078 0.94814 0.83572 0.93267 1.86464 1.28787 1.81091 1.41598 1.22359 0.98927 0.99015 0.84047 1.57543 1.16750 1.78450 1.30549 1.04743 0.72814 0.76934 0.74376 1.93478 1.46077 1.83769 1.74985 1.93486 1.70450 1.56525 1.77630 1.30388 1.10234 1.19225 1.12004 1.18834 0.93487 0.97801 0.91802 1.21542 1.31937 0.97648 1.06665 0.90639 1.26120 0.94880 0.99444 0.99731 1.70109 1.33749 1.27193 1.26365 0.85253 0.78151 0.78725 0.78046 1.17930 1.20339 1.20319 1.21877 0.77374 1.02636 0.99746 0.91034 0.91998 0.91353 0.90508 0.90059 0.75438 0.88549 0.89129 0.84047 0.84146 0.97569 0.97539 0.92360 0.89345 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.20 71.98 0.66 -1.19 16 2 C -0.10 -1.81 2.87 -10.71 -0.03 -1.84 16 3 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.10 -1.74 4.82 30.62 0.15 -1.59 16 5 C 0.10 1.89 3.62 30.67 0.11 2.01 16 6 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 7 O -0.57 -10.35 13.32 -148.98 -1.98 -12.34 16 8 C 0.08 1.75 6.06 86.35 0.52 2.27 16 9 N -0.99 -25.26 3.22 -512.89 -1.65 -26.91 16 10 S 2.61 93.18 5.45 -56.49 -0.31 92.87 16 11 O -0.99 -40.80 16.59 -127.65 -2.12 -42.92 16 12 O -0.99 -40.94 16.59 -127.65 -2.12 -43.06 16 13 C -0.59 -22.02 6.12 71.98 0.44 -21.58 16 14 C 0.02 1.03 4.98 29.85 0.15 1.18 16 15 C -0.54 -29.80 9.11 25.60 0.23 -29.56 16 16 H 0.08 3.86 7.74 -2.91 -0.02 3.83 16 17 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 18 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 19 Si 0.97 43.04 29.54 68.60 2.03 45.07 16 20 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 21 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 23 C 0.11 2.26 5.72 86.36 0.49 2.75 16 24 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.40 4.36 9.08 -74.06 -0.67 3.69 16 30 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.09 2.04 6.86 -2.38 -0.02 2.02 16 32 H 0.14 4.63 8.14 -2.39 -0.02 4.61 16 33 H 0.14 4.61 8.14 -2.39 -0.02 4.59 16 34 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 37 H 0.09 2.05 6.86 -2.39 -0.02 2.03 16 38 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -75.03 321.97 -2.31 -77.33 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.37 Total: 13.72 kcal Atomic # 6 Polarization: -50.48 SS G_CDS: 3.19 Total: -47.29 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -1.37 Total: -83.39 kcal Atomic # 8 Polarization: -92.09 SS G_CDS: -6.22 Total: -98.31 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: 93.18 SS G_CDS: -0.31 Total: 92.87 kcal Total: -75.03 -2.31 -77.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569502878.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.162 kcal (2) G-P(sol) polarization free energy of solvation -75.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds