Wall clock time and date at job start Mon Mar 30 2020 01:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47022 * 2 1 4 4 C 1.50695 * 109.47368 * 239.99859 * 2 1 3 5 5 H 1.08002 * 119.99915 * 240.00370 * 4 2 1 6 6 C 1.37879 * 120.00273 * 59.99631 * 4 2 1 7 7 N 1.31513 * 119.99922 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00269 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46724 * 60.00621 * 8 6 4 10 10 H 1.48501 * 109.47097 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46939 * 300.00791 * 8 6 4 12 12 C 1.53003 * 109.46595 * 119.99498 * 2 1 3 13 13 S 1.81398 * 109.47443 * 300.00124 * 12 2 1 14 14 O 1.42099 * 110.54128 * 68.37699 * 13 12 2 15 15 O 1.42095 * 110.54420 * 291.62690 * 13 12 2 16 16 N 1.65596 * 104.44809 * 180.02562 * 13 12 2 17 17 C 1.47019 * 125.64982 * 89.97741 * 16 13 12 18 18 C 1.54321 * 107.27531 * 178.97502 * 17 16 13 19 19 C 1.55157 * 103.10033 * 337.71659 * 18 17 16 20 20 H 1.09001 * 111.00741 * 277.51995 * 19 18 17 21 21 O 1.42905 * 111.00350 * 153.66229 * 19 18 17 22 22 C 1.47431 * 125.64875 * 270.01765 * 16 13 12 23 23 H 1.08990 * 109.47567 * 300.00449 * 1 2 3 24 24 H 1.09004 * 109.47066 * 60.00500 * 1 2 3 25 25 H 1.08997 * 109.46938 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46918 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.46792 * 299.99668 * 3 2 1 28 28 H 1.09006 * 109.47107 * 59.99611 * 3 2 1 29 29 H 0.97002 * 120.00236 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46815 * 180.02562 * 12 2 1 31 31 H 1.08997 * 109.46859 * 60.00708 * 12 2 1 32 32 H 1.09001 * 109.88251 * 59.55243 * 17 16 13 33 33 H 1.09004 * 109.88394 * 298.39156 * 17 16 13 34 34 H 1.09002 * 110.72109 * 96.17040 * 18 17 16 35 35 H 1.09003 * 110.72356 * 219.26865 * 18 17 16 36 36 H 0.96695 * 113.99758 * 61.45781 * 21 19 18 37 37 H 1.08999 * 110.36190 * 322.92959 * 22 16 13 38 38 H 1.08999 * 110.36356 * 85.25480 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3227 -1.1197 -4.0079 9 1 1.8282 -2.5200 -4.0080 10 1 1.8280 -0.4194 -5.2204 11 1 3.8077 -1.1191 -4.0075 12 6 2.0399 -0.7212 1.2494 13 16 1.4352 0.1340 2.7304 14 8 0.0278 -0.0182 2.8543 15 8 2.0478 1.4101 2.8544 16 7 2.0539 -0.7398 3.9937 17 6 3.3495 -0.5022 4.6467 18 6 3.4879 -1.5393 5.7811 19 6 2.0176 -1.9398 6.0728 20 1 1.5400 -1.2178 6.7352 21 8 1.9445 -3.2587 6.6181 22 6 1.3972 -1.8855 4.6492 23 1 -0.3634 0.5138 0.8898 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6766 1.9564 0.8900 29 1 0.7096 1.1616 -3.4845 30 1 3.1299 -0.7208 1.2496 31 1 1.6766 -1.7488 1.2493 32 1 3.3766 0.5058 5.0606 33 1 4.1571 -0.6311 3.9261 34 1 4.0636 -2.4024 5.4465 35 1 3.9469 -1.0892 6.6614 36 1 2.4069 -3.3620 7.4610 37 1 0.3213 -1.7216 4.7107 38 1 1.6112 -2.8065 4.1070 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569867516.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:02 Heat of formation + Delta-G solvation = -118.459713 kcal Electronic energy + Delta-G solvation = -20965.062992 eV Core-core repulsion = 17741.918708 eV Total energy + Delta-G solvation = -3223.144283 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.95683 -36.59119 -36.28779 -35.81077 -35.30453 -31.66695 -30.26816 -28.58562 -26.62364 -25.72343 -25.23051 -22.50094 -21.47281 -19.47097 -18.65045 -17.76818 -17.37696 -16.01823 -15.70625 -15.46894 -14.94873 -14.79987 -14.40589 -14.07136 -13.60934 -13.25058 -12.97144 -12.90911 -12.51100 -12.27725 -12.13446 -11.70434 -11.59065 -11.40194 -11.09064 -11.05393 -10.95546 -10.91635 -10.70563 -10.41047 -10.28566 -10.23000 -10.10684 -9.65847 -9.58865 -8.95842 -8.63170 -8.40258 -6.03587 -4.15739 0.76137 3.03056 3.27116 3.32516 3.34231 3.82341 4.30257 4.34204 4.38315 4.45433 4.74152 4.81046 5.10655 5.21490 5.31664 5.43259 5.52351 5.65180 5.66383 5.71681 5.80173 5.89750 6.12894 6.37323 6.43986 6.69956 6.78861 6.89641 7.03344 7.30788 7.34226 7.49676 7.67334 7.97391 8.08830 8.32424 8.82410 9.49603 10.97727 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030702 B = 0.005064 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.775584 B = 5528.135499 C = 5798.004242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.081 3.919 3 C -0.163 4.163 4 C -0.503 4.503 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.580 4.580 13 S 2.608 3.392 14 O -0.958 6.958 15 O -0.958 6.958 16 N -1.021 6.021 17 C 0.121 3.879 18 C -0.163 4.163 19 C 0.092 3.908 20 H 0.075 0.925 21 O -0.559 6.559 22 C 0.124 3.876 23 H 0.027 0.973 24 H 0.095 0.905 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.095 0.905 28 H 0.027 0.973 29 H 0.263 0.737 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.381 0.619 37 H 0.090 0.910 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.619 -4.950 15.890 17.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 C -0.221 4.221 4 C -0.542 4.542 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.714 4.714 13 S 2.708 3.292 14 O -0.949 6.949 15 O -0.948 6.948 16 N -0.858 5.858 17 C -0.005 4.005 18 C -0.202 4.202 19 C 0.032 3.968 20 H 0.093 0.907 21 O -0.364 6.364 22 C -0.002 4.002 23 H 0.046 0.954 24 H 0.114 0.886 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.114 0.886 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.229 0.771 37 H 0.108 0.892 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.604 -4.103 15.273 16.220 hybrid contribution 1.175 -0.920 -0.660 1.631 sum 4.779 -5.022 14.614 16.175 Atomic orbital electron populations 1.22276 0.96857 1.00685 1.02323 1.17947 0.92883 0.92227 0.89036 1.22275 0.99710 0.97789 1.02322 1.20897 1.31814 1.12112 0.89373 0.92367 1.24936 0.94868 0.94980 0.98917 1.69790 1.36250 1.22539 1.23603 0.86584 0.79133 0.79718 0.82109 1.20261 1.21159 1.20286 1.30561 1.11272 1.12892 1.16631 1.05380 0.74419 0.74580 0.74800 1.93536 1.29175 1.86517 1.85624 1.93534 1.78254 1.37414 1.85637 1.58954 1.29572 1.47051 1.50234 1.21577 0.85078 0.99163 0.94662 1.23362 0.97899 0.99982 0.98965 1.23035 0.94710 0.84227 0.94849 0.90708 1.86468 1.78447 1.29630 1.41816 1.21823 0.97937 0.89227 0.91229 0.95389 0.88612 0.94420 0.94474 0.88602 0.95410 0.92669 0.86430 0.86346 0.90840 0.91302 0.89662 0.90041 0.77141 0.89151 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 7.78 37.16 0.29 -3.78 16 2 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 3 C -0.16 -4.04 7.78 37.16 0.29 -3.75 16 4 C -0.50 -13.29 8.01 -34.44 -0.28 -13.57 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.06 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -24.20 9.35 55.43 0.52 -23.69 16 8 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 C -0.58 -11.54 5.12 37.16 0.19 -11.35 16 13 S 2.61 49.62 4.68 -107.50 -0.50 49.12 16 14 O -0.96 -20.43 14.90 -57.54 -0.86 -21.28 16 15 O -0.96 -20.26 15.22 -57.54 -0.88 -21.13 16 16 N -1.02 -14.97 3.62 -111.13 -0.40 -15.37 16 17 C 0.12 1.42 6.90 -3.07 -0.02 1.40 16 18 C -0.16 -1.40 6.67 -24.90 -0.17 -1.57 16 19 C 0.09 0.91 4.45 -24.32 -0.11 0.80 16 20 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 21 O -0.56 -5.11 13.48 -35.23 -0.48 -5.58 16 22 C 0.12 1.60 6.83 -2.26 -0.02 1.58 16 23 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 24 H 0.10 2.56 6.07 -51.93 -0.32 2.24 16 25 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.10 2.55 6.07 -51.93 -0.32 2.24 16 28 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 29 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.12 2.13 8.14 -51.92 -0.42 1.70 16 31 H 0.12 2.17 8.14 -51.93 -0.42 1.74 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.38 1.66 9.11 45.56 0.42 2.07 16 37 H 0.09 1.22 7.67 -51.93 -0.40 0.82 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 308.64 15.07 4.65 4.65 Total: -1.00 -32.45 308.64 -7.91 -40.35 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -4.95 Total: 3.93 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 0.01 Total: -26.68 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.12 Total: -39.06 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -2.21 Total: -48.00 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 49.62 SS G_CDS: -0.50 Total: 49.12 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.45 -7.91 -40.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569867516.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.107 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds