Wall clock time and date at job start Mon Mar 30 2020 01:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47022 * 2 1 4 4 C 1.50695 * 109.47368 * 239.99859 * 2 1 3 5 5 H 1.08002 * 119.99915 * 240.00370 * 4 2 1 6 6 C 1.37879 * 120.00273 * 59.99631 * 4 2 1 7 7 N 1.31513 * 119.99922 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00269 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46724 * 60.00621 * 8 6 4 10 10 H 1.48501 * 109.47097 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46939 * 300.00791 * 8 6 4 12 12 C 1.53003 * 109.46595 * 119.99498 * 2 1 3 13 13 S 1.81398 * 109.47443 * 300.00124 * 12 2 1 14 14 O 1.42099 * 110.54128 * 68.37699 * 13 12 2 15 15 O 1.42095 * 110.54420 * 291.62690 * 13 12 2 16 16 N 1.65596 * 104.44809 * 180.02562 * 13 12 2 17 17 C 1.47019 * 125.64982 * 89.97741 * 16 13 12 18 18 C 1.54321 * 107.27531 * 178.97502 * 17 16 13 19 19 C 1.55157 * 103.10033 * 337.71659 * 18 17 16 20 20 H 1.09001 * 111.00741 * 277.51995 * 19 18 17 21 21 O 1.42905 * 111.00350 * 153.66229 * 19 18 17 22 22 C 1.47431 * 125.64875 * 270.01765 * 16 13 12 23 23 H 1.08990 * 109.47567 * 300.00449 * 1 2 3 24 24 H 1.09004 * 109.47066 * 60.00500 * 1 2 3 25 25 H 1.08997 * 109.46938 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46918 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.46792 * 299.99668 * 3 2 1 28 28 H 1.09006 * 109.47107 * 59.99611 * 3 2 1 29 29 H 0.97002 * 120.00236 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46815 * 180.02562 * 12 2 1 31 31 H 1.08997 * 109.46859 * 60.00708 * 12 2 1 32 32 H 1.09001 * 109.88251 * 59.55243 * 17 16 13 33 33 H 1.09004 * 109.88394 * 298.39156 * 17 16 13 34 34 H 1.09002 * 110.72109 * 96.17040 * 18 17 16 35 35 H 1.09003 * 110.72356 * 219.26865 * 18 17 16 36 36 H 0.96695 * 113.99758 * 61.45781 * 21 19 18 37 37 H 1.08999 * 110.36190 * 322.92959 * 22 16 13 38 38 H 1.08999 * 110.36356 * 85.25480 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3227 -1.1197 -4.0079 9 1 1.8282 -2.5200 -4.0080 10 1 1.8280 -0.4194 -5.2204 11 1 3.8077 -1.1191 -4.0075 12 6 2.0399 -0.7212 1.2494 13 16 1.4352 0.1340 2.7304 14 8 0.0278 -0.0182 2.8543 15 8 2.0478 1.4101 2.8544 16 7 2.0539 -0.7398 3.9937 17 6 3.3495 -0.5022 4.6467 18 6 3.4879 -1.5393 5.7811 19 6 2.0176 -1.9398 6.0728 20 1 1.5400 -1.2178 6.7352 21 8 1.9445 -3.2587 6.6181 22 6 1.3972 -1.8855 4.6492 23 1 -0.3634 0.5138 0.8898 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6766 1.9564 0.8900 29 1 0.7096 1.1616 -3.4845 30 1 3.1299 -0.7208 1.2496 31 1 1.6766 -1.7488 1.2493 32 1 3.3766 0.5058 5.0606 33 1 4.1571 -0.6311 3.9261 34 1 4.0636 -2.4024 5.4465 35 1 3.9469 -1.0892 6.6614 36 1 2.4069 -3.3620 7.4610 37 1 0.3213 -1.7216 4.7107 38 1 1.6112 -2.8065 4.1070 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569867516.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:02 Heat of formation + Delta-G solvation = -143.596090 kcal Electronic energy + Delta-G solvation = -20966.152987 eV Core-core repulsion = 17741.918708 eV Total energy + Delta-G solvation = -3224.234279 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.81122 -38.19197 -38.15417 -36.96967 -36.58255 -33.64987 -31.17459 -29.50606 -28.32237 -27.71817 -27.26541 -23.50137 -22.25226 -21.31837 -19.95623 -18.97509 -18.39849 -17.92517 -17.05153 -16.96924 -16.68966 -15.98724 -15.48957 -15.12337 -14.79579 -14.75874 -14.46298 -14.45055 -13.98449 -13.83358 -13.45906 -13.13734 -13.03801 -12.88878 -12.82261 -12.56852 -12.54673 -12.42523 -12.18246 -12.16517 -11.99726 -11.64096 -11.59219 -11.40233 -10.90779 -10.68461 -10.42525 -9.97055 -8.04230 -6.23288 -0.73363 1.45018 1.45193 1.52738 1.71346 2.43494 2.83732 2.95258 3.18107 3.41813 3.47748 3.72956 3.99124 4.10653 4.12293 4.28535 4.52587 4.57010 4.58303 4.78962 4.81909 4.83222 4.83807 4.93986 4.97584 5.02988 5.06267 5.23545 5.35732 5.39168 5.50192 5.62624 5.94957 6.08945 6.32114 6.80763 6.91993 7.45009 8.95546 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030702 B = 0.005064 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.775584 B = 5528.135499 C = 5798.004242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.068 3.932 3 C -0.159 4.159 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.019 3.981 7 N -0.907 5.907 8 Si 0.956 3.044 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.271 1.271 12 C -0.584 4.584 13 S 2.629 3.371 14 O -0.986 6.986 15 O -0.982 6.982 16 N -1.017 6.017 17 C 0.104 3.896 18 C -0.148 4.148 19 C 0.100 3.900 20 H 0.084 0.916 21 O -0.571 6.571 22 C 0.108 3.892 23 H 0.032 0.968 24 H 0.072 0.928 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.072 0.928 28 H 0.032 0.968 29 H 0.262 0.738 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.403 0.597 37 H 0.078 0.922 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.109 -6.346 17.385 19.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.066 3.934 3 C -0.216 4.216 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.181 4.181 7 N -0.546 5.546 8 Si 0.782 3.218 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.197 1.197 12 C -0.717 4.717 13 S 2.728 3.272 14 O -0.976 6.976 15 O -0.973 6.973 16 N -0.857 5.857 17 C -0.021 4.021 18 C -0.187 4.187 19 C 0.040 3.960 20 H 0.102 0.898 21 O -0.380 6.380 22 C -0.017 4.017 23 H 0.051 0.949 24 H 0.091 0.909 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.154 0.846 31 H 0.151 0.849 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.131 0.869 36 H 0.255 0.745 37 H 0.096 0.904 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.108 -5.506 16.776 18.380 hybrid contribution 0.717 -0.518 -1.034 1.361 sum 5.824 -6.024 15.742 17.833 Atomic orbital electron populations 1.22206 0.97703 1.00465 1.01369 1.17948 0.92399 0.92265 0.90808 1.22196 0.99852 0.98226 1.01364 1.21244 1.31859 1.12359 0.90405 0.92002 1.25681 0.95115 0.95643 1.01667 1.69932 1.37070 1.23620 1.23980 0.85651 0.78753 0.78685 0.78755 1.19772 1.21192 1.19659 1.30498 1.12452 1.13261 1.15482 1.04392 0.73600 0.74199 0.74978 1.93492 1.31109 1.86932 1.86115 1.93494 1.78531 1.39123 1.86104 1.58501 1.31023 1.47245 1.48922 1.21969 0.83662 1.00498 0.95934 1.23342 0.97230 0.99374 0.98762 1.22874 0.95249 0.84893 0.93031 0.89798 1.86419 1.79115 1.29009 1.43429 1.22061 0.97550 0.88523 0.93566 0.94928 0.90925 0.94199 0.94040 0.90953 0.94925 0.92849 0.84645 0.84921 0.90827 0.90372 0.88776 0.86945 0.74547 0.90392 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.07 7.78 71.98 0.56 -7.51 16 2 C 0.07 3.33 0.52 -52.93 -0.03 3.30 16 3 C -0.16 -7.94 7.78 71.98 0.56 -7.38 16 4 C -0.52 -27.34 8.01 25.60 0.21 -27.14 16 5 H 0.06 3.13 7.74 -2.91 -0.02 3.10 16 6 C 0.02 0.99 5.15 84.66 0.44 1.42 16 7 N -0.91 -50.53 9.35 21.45 0.20 -50.33 16 8 Si 0.96 42.29 29.54 68.60 2.03 44.31 16 9 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 10 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 C -0.58 -22.74 5.12 71.98 0.37 -22.37 16 13 S 2.63 98.51 4.68 -56.49 -0.26 98.24 16 14 O -0.99 -42.10 14.90 -127.65 -1.90 -44.01 16 15 O -0.98 -41.11 15.22 -127.65 -1.94 -43.06 16 16 N -1.02 -28.22 3.62 -505.51 -1.83 -30.05 16 17 C 0.10 2.17 6.90 86.73 0.60 2.77 16 18 C -0.15 -1.98 6.67 31.78 0.21 -1.77 16 19 C 0.10 1.69 4.45 32.16 0.14 1.83 16 20 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 21 O -0.57 -8.63 13.48 -148.98 -2.01 -10.64 16 22 C 0.11 2.62 6.83 87.02 0.59 3.22 16 23 H 0.03 1.57 5.46 -2.39 -0.01 1.56 16 24 H 0.07 3.99 6.07 -2.38 -0.01 3.97 16 25 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.07 3.95 6.07 -2.38 -0.01 3.93 16 28 H 0.03 1.55 5.46 -2.38 -0.01 1.54 16 29 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 30 H 0.14 4.70 8.14 -2.39 -0.02 4.68 16 31 H 0.13 4.70 8.14 -2.39 -0.02 4.68 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.40 2.01 9.11 -74.06 -0.68 1.33 16 37 H 0.08 2.06 7.67 -2.39 -0.02 2.04 16 38 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -69.44 308.64 -1.69 -71.13 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.39 Total: 18.02 kcal Atomic # 6 Polarization: -57.28 SS G_CDS: 3.65 Total: -53.63 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -1.63 Total: -80.37 kcal Atomic # 8 Polarization: -91.85 SS G_CDS: -5.85 Total: -97.70 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: 98.51 SS G_CDS: -0.26 Total: 98.24 kcal Total: -69.44 -1.69 -71.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569867516.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.465 kcal (2) G-P(sol) polarization free energy of solvation -69.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds