Wall clock time and date at job start Mon Mar 30 2020 01:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46970 * 2 1 4 4 O 1.42898 * 109.47154 * 240.00169 * 2 1 3 5 5 C 1.52994 * 109.47253 * 120.00086 * 2 1 3 6 6 N 1.46499 * 109.47081 * 60.00004 * 5 2 1 7 7 S 1.65598 * 119.99908 * 165.27567 * 6 5 2 8 8 O 1.42104 * 104.27853 * 180.79648 * 7 6 5 9 9 O 1.42097 * 104.27977 * 308.65351 * 7 6 5 10 10 C 1.81401 * 104.44942 * 64.72687 * 7 6 5 11 11 C 1.53004 * 109.47124 * 173.80914 * 10 7 6 12 12 C 1.50693 * 115.55085 * 65.19431 * 11 10 7 13 13 H 1.08004 * 119.99827 * 264.78193 * 12 11 10 14 14 C 1.37874 * 120.00327 * 84.78416 * 12 11 10 15 15 N 1.31516 * 119.99825 * 352.23443 * 14 12 11 16 16 Si 1.86803 * 120.00251 * 172.23174 * 14 12 11 17 17 H 1.48498 * 109.46898 * 90.00085 * 16 14 12 18 18 H 1.48499 * 109.46936 * 210.00057 * 16 14 12 19 19 H 1.48498 * 109.46925 * 330.00298 * 16 14 12 20 20 C 1.53000 * 117.49599 * 279.52028 * 11 10 7 21 21 C 1.53005 * 117.49779 * 210.86752 * 11 10 7 22 22 H 1.08992 * 109.46978 * 300.00226 * 1 2 3 23 23 H 1.09003 * 109.46813 * 60.00099 * 1 2 3 24 24 H 1.09003 * 109.46927 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47502 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47155 * 300.00163 * 3 2 1 27 27 H 1.08999 * 109.47195 * 59.99785 * 3 2 1 28 28 H 0.96702 * 114.00355 * 179.97438 * 4 2 1 29 29 H 1.08998 * 109.47263 * 300.00328 * 5 2 1 30 30 H 1.09001 * 109.47212 * 179.97438 * 5 2 1 31 31 H 0.97001 * 120.00334 * 344.99946 * 6 5 2 32 32 H 1.08992 * 109.47101 * 293.80720 * 10 7 6 33 33 H 1.09002 * 109.47316 * 53.80841 * 10 7 6 34 34 H 0.97003 * 120.00122 * 185.03242 * 15 14 12 35 35 H 1.08999 * 117.50399 * 0.02562 * 20 11 10 36 36 H 1.09006 * 117.49780 * 145.01817 * 20 11 10 37 37 H 1.09000 * 117.49458 * 214.97918 * 21 11 10 38 38 H 1.09000 * 117.49939 * 359.97079 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 7 1.5517 -2.1024 1.2492 7 16 2.2272 -3.2195 2.2681 8 8 1.5287 -4.4233 1.9811 9 8 3.6242 -3.1091 2.0325 10 6 1.8131 -2.6242 3.9308 11 6 2.2534 -3.6598 4.9676 12 6 3.7397 -3.8869 5.0688 13 1 4.2008 -4.6960 4.5218 14 6 4.5109 -3.0618 5.8596 15 7 3.9805 -1.9882 6.4032 16 14 6.3093 -3.4690 6.1591 17 1 7.1430 -2.8292 5.1099 18 1 6.7164 -2.9604 7.4935 19 1 6.4979 -4.9412 6.1117 20 6 1.3375 -4.8638 5.1965 21 6 1.4337 -3.7627 6.2554 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4426 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 2.9704 -0.7115 -1.2331 29 1 1.6767 -0.2075 2.1392 30 1 3.1301 -0.7216 1.2489 31 1 0.8300 -2.3618 0.6552 32 1 2.3273 -1.6816 4.1178 33 1 0.7363 -2.4715 4.0044 34 1 4.5390 -1.3690 6.8988 35 1 0.4215 -4.9184 4.6082 36 1 1.8100 -5.8202 5.4206 37 1 1.9695 -3.9951 7.1758 38 1 0.5810 -3.0924 6.3643 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574466297.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:48 Heat of formation + Delta-G solvation = -110.061511 kcal Electronic energy + Delta-G solvation = -20812.023312 eV Core-core repulsion = 17589.243202 eV Total energy + Delta-G solvation = -3222.780110 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.69237 -36.75538 -36.20670 -35.06086 -34.25663 -32.05336 -31.86239 -28.16713 -27.55933 -25.65853 -25.43716 -21.21692 -20.58234 -19.69614 -18.62616 -17.40526 -16.76933 -16.34688 -15.46571 -15.32428 -14.98087 -14.73542 -14.42402 -14.07795 -13.75917 -13.23827 -13.05113 -12.77546 -12.33914 -12.17314 -11.94063 -11.84973 -11.82245 -11.43638 -11.26152 -11.11882 -11.01099 -10.95028 -10.81383 -10.57988 -10.45581 -10.12175 -10.05707 -9.73874 -9.16764 -8.96048 -8.57241 -8.09301 -6.15247 -4.25407 1.10211 3.29702 3.35140 3.40697 3.48182 4.13634 4.36248 4.49746 4.63873 4.75647 4.80067 5.05035 5.14204 5.21724 5.37967 5.40804 5.50492 5.58952 5.68323 5.77173 5.81684 5.90594 5.97838 6.06726 6.18737 6.27063 6.36915 6.60543 6.72147 6.97812 7.22606 7.32487 7.38606 7.60398 7.79368 8.19852 8.80059 9.45586 10.92420 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020630 B = 0.006107 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.925680 B = 4583.832265 C = 5060.628020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.122 3.878 3 C -0.179 4.179 4 O -0.557 6.557 5 C 0.090 3.910 6 N -1.126 6.126 7 S 2.609 3.391 8 O -0.975 6.975 9 O -0.952 6.952 10 C -0.555 4.555 11 C 0.043 3.957 12 C -0.515 4.515 13 H 0.068 0.932 14 C 0.082 3.918 15 N -0.875 5.875 16 Si 0.892 3.108 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.270 1.270 20 C -0.208 4.208 21 C -0.141 4.141 22 H 0.073 0.927 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.379 0.621 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.411 0.589 32 H 0.132 0.868 33 H 0.099 0.901 34 H 0.263 0.737 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.296 7.303 -9.178 13.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.080 3.920 3 C -0.237 4.237 4 O -0.363 6.363 5 C -0.037 4.037 6 N -0.884 5.884 7 S 2.706 3.294 8 O -0.965 6.965 9 O -0.942 6.942 10 C -0.688 4.688 11 C 0.040 3.960 12 C -0.552 4.552 13 H 0.086 0.914 14 C -0.123 4.123 15 N -0.511 5.511 16 Si 0.718 3.282 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.194 1.194 20 C -0.245 4.245 21 C -0.181 4.181 22 H 0.092 0.908 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.227 0.773 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.245 0.755 32 H 0.150 0.850 33 H 0.117 0.883 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.251 6.670 -9.304 13.043 hybrid contribution 0.917 0.527 0.610 1.221 sum -5.334 7.197 -8.694 12.484 Atomic orbital electron populations 1.21762 0.92482 1.03006 1.02552 1.21365 0.95282 0.90739 0.84654 1.22470 1.02001 0.96126 1.03108 1.86518 1.27111 1.79524 1.43139 1.21949 1.00232 0.82703 0.98842 1.55873 1.53265 1.22247 1.57043 1.05079 0.74379 0.73340 0.76637 1.93504 1.75173 1.43602 1.84230 1.93522 1.30989 1.85651 1.84042 1.29984 1.07578 1.11765 1.19447 1.18283 0.93035 0.91049 0.93608 1.20525 0.89354 1.16124 1.29201 0.91368 1.24952 0.98625 0.94608 0.94131 1.69980 1.35690 1.11013 1.34405 0.86577 0.84721 0.79324 0.77540 1.20076 1.21079 1.19416 1.23197 1.01398 0.94863 1.05084 1.22551 1.00897 1.00089 0.94527 0.90814 0.91792 0.91644 0.91808 0.91495 0.91126 0.77295 0.91025 0.89924 0.75519 0.84973 0.88284 0.92768 0.90661 0.89526 0.89598 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.67 37.16 0.32 -1.03 16 2 C 0.12 1.29 1.10 -90.62 -0.10 1.19 16 3 C -0.18 -1.53 8.81 37.16 0.33 -1.21 16 4 O -0.56 -6.50 12.84 -35.23 -0.45 -6.95 16 5 C 0.09 1.16 5.23 -4.04 -0.02 1.14 16 6 N -1.13 -16.91 5.61 -10.62 -0.06 -16.97 16 7 S 2.61 52.57 5.19 -107.50 -0.56 52.01 16 8 O -0.97 -21.68 18.08 -57.54 -1.04 -22.72 16 9 O -0.95 -22.54 17.18 -57.54 -0.99 -23.53 16 10 C -0.55 -11.49 5.92 37.16 0.22 -11.27 16 11 C 0.04 1.03 1.32 -155.66 -0.21 0.83 16 12 C -0.51 -14.06 8.18 -34.44 -0.28 -14.34 16 13 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 14 C 0.08 2.21 5.38 -17.82 -0.10 2.12 16 15 N -0.88 -23.82 12.98 55.43 0.72 -23.10 16 16 Si 0.89 21.27 29.55 -169.99 -5.02 16.25 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 C -0.21 -4.59 9.96 -26.70 -0.27 -4.86 16 21 C -0.14 -3.22 9.49 -26.69 -0.25 -3.47 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.66 6.60 -51.93 -0.34 0.32 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.38 3.49 9.05 45.56 0.41 3.90 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.13 7.71 -51.93 -0.40 0.72 16 31 H 0.41 5.57 7.04 -34.47 -0.24 5.33 16 32 H 0.13 2.81 8.14 -51.93 -0.42 2.39 16 33 H 0.10 1.73 8.09 -51.92 -0.42 1.31 16 34 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 35 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 37 H 0.09 2.06 8.14 -51.93 -0.42 1.63 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 331.02 15.07 4.99 4.99 Total: -1.00 -33.22 331.02 -7.96 -41.18 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -5.19 Total: 9.74 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: -0.35 Total: -30.89 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.66 Total: -40.08 kcal Atomic # 8 Polarization: -50.72 SS G_CDS: -2.48 Total: -53.21 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 52.57 SS G_CDS: -0.56 Total: 52.01 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.22 -7.96 -41.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574466297.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.881 kcal (2) G-P(sol) polarization free energy of solvation -33.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds