Wall clock time and date at job start Mon Mar 30 2020 01:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46970 * 2 1 4 4 O 1.42898 * 109.47154 * 240.00169 * 2 1 3 5 5 C 1.52994 * 109.47253 * 120.00086 * 2 1 3 6 6 N 1.46499 * 109.47081 * 60.00004 * 5 2 1 7 7 S 1.65598 * 119.99908 * 165.27567 * 6 5 2 8 8 O 1.42104 * 104.27853 * 180.79648 * 7 6 5 9 9 O 1.42097 * 104.27977 * 308.65351 * 7 6 5 10 10 C 1.81401 * 104.44942 * 64.72687 * 7 6 5 11 11 C 1.53004 * 109.47124 * 173.80914 * 10 7 6 12 12 C 1.50693 * 115.55085 * 65.19431 * 11 10 7 13 13 H 1.08004 * 119.99827 * 264.78193 * 12 11 10 14 14 C 1.37874 * 120.00327 * 84.78416 * 12 11 10 15 15 N 1.31516 * 119.99825 * 352.23443 * 14 12 11 16 16 Si 1.86803 * 120.00251 * 172.23174 * 14 12 11 17 17 H 1.48498 * 109.46898 * 90.00085 * 16 14 12 18 18 H 1.48499 * 109.46936 * 210.00057 * 16 14 12 19 19 H 1.48498 * 109.46925 * 330.00298 * 16 14 12 20 20 C 1.53000 * 117.49599 * 279.52028 * 11 10 7 21 21 C 1.53005 * 117.49779 * 210.86752 * 11 10 7 22 22 H 1.08992 * 109.46978 * 300.00226 * 1 2 3 23 23 H 1.09003 * 109.46813 * 60.00099 * 1 2 3 24 24 H 1.09003 * 109.46927 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47502 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47155 * 300.00163 * 3 2 1 27 27 H 1.08999 * 109.47195 * 59.99785 * 3 2 1 28 28 H 0.96702 * 114.00355 * 179.97438 * 4 2 1 29 29 H 1.08998 * 109.47263 * 300.00328 * 5 2 1 30 30 H 1.09001 * 109.47212 * 179.97438 * 5 2 1 31 31 H 0.97001 * 120.00334 * 344.99946 * 6 5 2 32 32 H 1.08992 * 109.47101 * 293.80720 * 10 7 6 33 33 H 1.09002 * 109.47316 * 53.80841 * 10 7 6 34 34 H 0.97003 * 120.00122 * 185.03242 * 15 14 12 35 35 H 1.08999 * 117.50399 * 0.02562 * 20 11 10 36 36 H 1.09006 * 117.49780 * 145.01817 * 20 11 10 37 37 H 1.09000 * 117.49458 * 214.97918 * 21 11 10 38 38 H 1.09000 * 117.49939 * 359.97079 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 7 1.5517 -2.1024 1.2492 7 16 2.2272 -3.2195 2.2681 8 8 1.5287 -4.4233 1.9811 9 8 3.6242 -3.1091 2.0325 10 6 1.8131 -2.6242 3.9308 11 6 2.2534 -3.6598 4.9676 12 6 3.7397 -3.8869 5.0688 13 1 4.2008 -4.6960 4.5218 14 6 4.5109 -3.0618 5.8596 15 7 3.9805 -1.9882 6.4032 16 14 6.3093 -3.4690 6.1591 17 1 7.1430 -2.8292 5.1099 18 1 6.7164 -2.9604 7.4935 19 1 6.4979 -4.9412 6.1117 20 6 1.3375 -4.8638 5.1965 21 6 1.4337 -3.7627 6.2554 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4426 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 2.9704 -0.7115 -1.2331 29 1 1.6767 -0.2075 2.1392 30 1 3.1301 -0.7216 1.2489 31 1 0.8300 -2.3618 0.6552 32 1 2.3273 -1.6816 4.1178 33 1 0.7363 -2.4715 4.0044 34 1 4.5390 -1.3690 6.8988 35 1 0.4215 -4.9184 4.6082 36 1 1.8100 -5.8202 5.4206 37 1 1.9695 -3.9951 7.1758 38 1 0.5810 -3.0924 6.3643 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574466297.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:47 Heat of formation + Delta-G solvation = -136.464784 kcal Electronic energy + Delta-G solvation = -20813.168244 eV Core-core repulsion = 17589.243202 eV Total energy + Delta-G solvation = -3223.925042 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.58042 -38.56223 -37.91358 -36.77302 -35.36851 -34.08386 -32.75567 -29.84595 -28.27234 -27.49290 -26.64394 -22.99174 -21.59690 -21.32854 -20.20321 -18.65890 -18.37163 -17.93250 -16.83106 -16.75829 -16.52432 -16.16816 -15.85340 -15.42322 -15.16880 -14.86805 -14.15090 -13.74537 -13.65965 -13.56367 -13.13621 -13.05064 -12.95640 -12.94135 -12.89323 -12.85972 -12.72791 -12.54582 -12.43012 -12.21329 -11.91207 -11.62424 -11.54644 -10.98627 -10.87188 -10.55143 -10.44318 -9.85350 -8.19441 -6.33696 -0.49070 1.38539 1.40821 1.49529 2.06398 2.39639 2.95985 3.07928 3.32796 3.39061 3.50141 3.69920 3.92727 3.98258 4.08579 4.32276 4.44981 4.52879 4.58470 4.60132 4.75511 4.84073 4.88421 4.95687 4.98024 5.03983 5.08242 5.21451 5.31161 5.37923 5.47147 5.58916 5.71815 6.16379 6.23050 6.71958 6.83462 7.38316 8.87541 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020630 B = 0.006107 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.925680 B = 4583.832265 C = 5060.628020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.123 3.877 3 C -0.175 4.175 4 O -0.572 6.572 5 C 0.078 3.922 6 N -1.109 6.109 7 S 2.625 3.375 8 O -0.999 6.999 9 O -0.994 6.994 10 C -0.550 4.550 11 C 0.009 3.991 12 C -0.535 4.535 13 H 0.047 0.953 14 C 0.044 3.956 15 N -0.891 5.891 16 Si 0.935 3.065 17 H -0.276 1.276 18 H -0.273 1.273 19 H -0.271 1.271 20 C -0.198 4.198 21 C -0.137 4.137 22 H 0.089 0.911 23 H 0.071 0.929 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.387 0.613 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.420 0.580 32 H 0.125 0.875 33 H 0.135 0.865 34 H 0.266 0.734 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.379 8.510 -9.500 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.081 3.919 3 C -0.234 4.234 4 O -0.380 6.380 5 C -0.048 4.048 6 N -0.871 5.871 7 S 2.722 3.278 8 O -0.989 6.989 9 O -0.984 6.984 10 C -0.683 4.683 11 C 0.007 3.993 12 C -0.572 4.572 13 H 0.065 0.935 14 C -0.159 4.159 15 N -0.527 5.527 16 Si 0.760 3.240 17 H -0.202 1.202 18 H -0.198 1.198 19 H -0.196 1.196 20 C -0.236 4.236 21 C -0.176 4.176 22 H 0.108 0.892 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.236 0.764 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.257 0.743 32 H 0.144 0.856 33 H 0.153 0.847 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.335 7.867 -9.625 14.434 hybrid contribution 1.228 0.161 0.674 1.410 sum -6.107 8.028 -8.950 13.485 Atomic orbital electron populations 1.21842 0.91588 1.02946 1.03806 1.21459 0.95979 0.91380 0.83043 1.22444 1.02160 0.94661 1.04089 1.86498 1.28049 1.79889 1.43579 1.22281 0.99846 0.81545 1.01161 1.55358 1.53213 1.22574 1.55914 1.04297 0.73423 0.73326 0.76745 1.93460 1.75286 1.45569 1.84609 1.93469 1.33828 1.86394 1.84724 1.29856 1.09726 1.10162 1.18588 1.18431 0.91991 0.93300 0.95563 1.20687 0.91526 1.15722 1.29294 0.93503 1.25495 1.01576 0.94704 0.94138 1.70013 1.36616 1.11305 1.34721 0.85909 0.81313 0.78966 0.77821 1.20205 1.19772 1.19582 1.23246 1.01613 0.94090 1.04621 1.22513 1.01049 1.00758 0.93314 0.89175 0.91026 0.92337 0.91661 0.90643 0.89994 0.76376 0.89229 0.91056 0.74324 0.85650 0.84730 0.92495 0.88303 0.90078 0.91571 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.67 71.98 0.62 -1.78 16 2 C 0.12 2.36 1.10 -10.80 -0.01 2.35 16 3 C -0.18 -2.58 8.81 71.98 0.63 -1.94 16 4 O -0.57 -12.52 12.84 -148.98 -1.91 -14.43 16 5 C 0.08 1.88 5.23 86.38 0.45 2.34 16 6 N -1.11 -31.69 5.61 -187.50 -1.05 -32.74 16 7 S 2.62 104.20 5.19 -56.49 -0.29 103.90 16 8 O -1.00 -43.73 18.08 -127.65 -2.31 -46.03 16 9 O -0.99 -47.65 17.18 -127.65 -2.19 -49.85 16 10 C -0.55 -22.01 5.92 71.98 0.43 -21.59 16 11 C 0.01 0.45 1.32 -52.93 -0.07 0.38 16 12 C -0.53 -29.51 8.18 25.60 0.21 -29.30 16 13 H 0.05 2.70 7.83 -2.91 -0.02 2.68 16 14 C 0.04 2.38 5.38 84.65 0.46 2.84 16 15 N -0.89 -48.15 12.98 21.45 0.28 -47.88 16 16 Si 0.93 43.65 29.55 68.60 2.03 45.67 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 20 C -0.20 -8.51 9.96 30.62 0.30 -8.21 16 21 C -0.14 -6.07 9.49 30.62 0.29 -5.78 16 22 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.06 1.04 6.60 -2.39 -0.02 1.03 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.39 6.77 9.05 -74.06 -0.67 6.10 16 29 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 1.89 7.71 -2.39 -0.02 1.87 16 31 H 0.42 10.67 7.04 -96.75 -0.68 9.99 16 32 H 0.13 5.20 8.14 -2.39 -0.02 5.18 16 33 H 0.13 4.30 8.09 -2.39 -0.02 4.28 16 34 H 0.27 13.63 8.32 -92.71 -0.77 12.86 16 35 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 36 H 0.08 3.51 8.14 -2.38 -0.02 3.49 16 37 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -70.29 331.02 -2.43 -72.72 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -0.29 Total: 29.32 kcal Atomic # 6 Polarization: -64.01 SS G_CDS: 3.32 Total: -60.69 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -0.77 Total: -80.61 kcal Atomic # 8 Polarization: -103.90 SS G_CDS: -6.41 Total: -110.31 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 104.20 SS G_CDS: -0.29 Total: 103.90 kcal Total: -70.29 -2.43 -72.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574466297.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.741 kcal (2) G-P(sol) polarization free energy of solvation -70.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds