Wall clock time and date at job start Mon Mar 30 2020 02:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.41725 * 2 1 4 4 C 1.54482 * 110.37203 * 237.69255 * 2 1 3 5 5 C 1.54508 * 104.05886 * 217.18818 * 4 2 1 6 6 H 1.09005 * 110.62845 * 118.70034 * 5 4 2 7 7 N 1.46503 * 110.51009 * 241.35299 * 5 4 2 8 8 S 1.65600 * 120.00062 * 211.09950 * 7 5 4 9 9 O 1.42098 * 104.27576 * 308.92781 * 8 7 5 10 10 O 1.42102 * 104.27841 * 181.06908 * 8 7 5 11 11 C 1.81404 * 104.45074 * 64.99734 * 8 7 5 12 12 C 1.53000 * 109.46946 * 180.02562 * 11 8 7 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 8 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47282 * 89.99593 * 18 16 14 20 20 H 1.48498 * 109.47211 * 210.00040 * 18 16 14 21 21 H 1.48506 * 109.46856 * 330.00220 * 18 16 14 22 22 C 1.54478 * 104.06482 * 359.97438 * 5 4 2 23 23 O 1.44426 * 104.80464 * 23.98220 * 22 5 4 24 24 H 1.08997 * 109.47137 * 299.14140 * 1 2 3 25 25 H 1.08991 * 109.47365 * 59.14531 * 1 2 3 26 26 H 1.09001 * 109.46640 * 179.14521 * 1 2 3 27 27 H 1.08995 * 110.51545 * 98.54017 * 4 2 1 28 28 H 1.08998 * 110.50958 * 335.82952 * 4 2 1 29 29 H 0.96993 * 119.99757 * 31.09205 * 7 5 4 30 30 H 1.09002 * 109.47124 * 60.00022 * 11 8 7 31 31 H 1.09001 * 109.46975 * 300.00144 * 11 8 7 32 32 H 1.09001 * 109.47194 * 299.99756 * 12 11 8 33 33 H 1.08992 * 109.47399 * 59.99928 * 12 11 8 34 34 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 35 35 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 36 36 H 0.97000 * 119.99425 * 180.02562 * 17 16 14 37 37 H 1.09009 * 110.36967 * 142.81053 * 22 5 4 38 38 H 1.09003 * 110.37284 * 265.03277 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0678 -0.7740 -1.2240 5 6 3.3178 -1.5056 -0.6859 6 1 3.1980 -2.5855 -0.7732 7 7 4.5182 -1.0642 -1.4004 8 16 5.7813 -2.1116 -1.6232 9 8 6.0427 -2.6265 -0.3248 10 8 6.7554 -1.3437 -2.3165 11 6 5.1095 -3.4087 -2.6989 12 6 6.1944 -4.4501 -2.9807 13 6 5.6279 -5.5437 -3.8885 14 6 6.6966 -6.5691 -4.1667 15 1 7.6815 -6.4523 -3.7391 16 6 6.4171 -7.6565 -4.9670 17 7 5.2176 -7.7990 -5.4873 18 14 7.7416 -8.9280 -5.3113 19 1 7.6888 -9.9907 -4.2753 20 1 7.5142 -9.5296 -6.6497 21 1 9.0747 -8.2743 -5.2823 22 6 3.3877 -1.0865 0.7993 23 8 2.0333 -0.7228 1.1443 24 1 -0.3633 0.5004 0.8976 25 1 -0.3633 0.5270 -0.8821 26 1 -0.3633 -1.0276 -0.0153 27 1 2.3429 -0.0840 -2.0216 28 1 1.3276 -1.4919 -1.5772 29 1 4.5730 -0.1584 -1.7430 30 1 4.7775 -2.9660 -3.6380 31 1 4.2648 -3.8889 -2.2049 32 1 7.0393 -3.9701 -3.4745 33 1 6.5260 -4.8926 -2.0415 34 1 4.7829 -6.0238 -3.3952 35 1 5.2966 -5.1008 -4.8278 36 1 5.0209 -8.5642 -6.0500 37 1 3.7246 -1.9216 1.4137 38 1 4.0546 -0.2330 0.9218 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580321276.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:08 Heat of formation + Delta-G solvation = -164.884578 kcal Electronic energy + Delta-G solvation = -19803.105529 eV Core-core repulsion = 16577.948112 eV Total energy + Delta-G solvation = -3225.157417 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.63149 -38.19678 -37.07686 -36.47085 -35.98852 -34.16844 -32.99010 -30.24128 -29.66575 -26.88405 -25.63845 -23.01461 -22.45700 -21.95224 -20.49219 -18.83743 -18.56566 -17.93615 -17.16324 -16.81811 -16.53234 -16.45207 -16.30473 -15.98679 -15.39691 -14.55819 -14.49051 -14.10195 -13.69993 -13.53279 -13.46452 -13.21721 -13.17266 -13.09774 -12.98635 -12.76869 -12.73654 -12.63227 -12.58274 -12.16421 -12.03504 -11.77898 -11.68003 -11.37829 -11.13247 -10.81973 -10.57609 -10.39245 -8.23132 -6.33920 -0.77289 1.40377 1.40799 1.52197 1.70743 2.39574 2.70761 2.97494 3.10614 3.20847 3.46688 3.70057 3.74291 3.87903 3.97181 4.12365 4.21215 4.28708 4.39630 4.49742 4.65630 4.67801 4.78757 4.87913 4.94724 5.02709 5.05469 5.10830 5.16283 5.32715 5.45361 5.62961 5.79331 5.85522 6.08447 6.19553 6.81835 7.35501 8.88280 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027408 B = 0.003650 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.338768 B = 7669.307085 C = 8246.613042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.060 3.940 3 H 0.079 0.921 4 C -0.153 4.153 5 C 0.111 3.889 6 H 0.108 0.892 7 N -1.097 6.097 8 S 2.629 3.371 9 O -0.986 6.986 10 O -0.990 6.990 11 C -0.609 4.609 12 C -0.107 4.107 13 C 0.031 3.969 14 C -0.553 4.553 15 H 0.060 0.940 16 C 0.003 3.997 17 N -0.929 5.929 18 Si 0.962 3.038 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.265 1.265 22 C 0.027 3.973 23 O -0.391 6.391 24 H 0.060 0.940 25 H 0.090 0.910 26 H 0.060 0.940 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.428 0.572 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.004 0.996 35 H 0.003 0.997 36 H 0.265 0.735 37 H 0.095 0.905 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.267 17.297 8.710 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.003 3.997 3 H 0.097 0.903 4 C -0.192 4.192 5 C 0.003 3.997 6 H 0.126 0.874 7 N -0.858 5.858 8 S 2.724 3.276 9 O -0.976 6.976 10 O -0.981 6.981 11 C -0.740 4.740 12 C -0.147 4.147 13 C -0.008 4.008 14 C -0.591 4.591 15 H 0.078 0.922 16 C -0.195 4.195 17 N -0.569 5.569 18 Si 0.787 3.213 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.189 1.189 22 C -0.051 4.051 23 O -0.310 6.310 24 H 0.079 0.921 25 H 0.109 0.891 26 H 0.080 0.920 27 H 0.126 0.874 28 H 0.117 0.883 29 H 0.266 0.734 30 H 0.167 0.833 31 H 0.163 0.837 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.632 17.090 9.265 21.270 hybrid contribution 0.206 -0.762 -0.944 1.231 sum -8.426 16.327 8.321 20.170 Atomic orbital electron populations 1.21838 0.92063 1.03126 1.03320 1.23234 0.96335 0.95810 0.84365 0.90292 1.23382 0.96084 1.00814 0.98944 1.22323 0.85063 1.00789 0.91517 0.87395 1.55425 1.32453 1.26943 1.71012 1.04291 0.73497 0.75095 0.74739 1.93550 1.83864 1.81615 1.38523 1.93545 1.58790 1.69095 1.76625 1.30506 1.10925 1.15343 1.17241 1.21315 0.96194 0.95939 1.01205 1.18965 0.95454 0.92447 0.93898 1.21751 0.98767 1.08189 1.30408 0.92205 1.25923 0.97859 1.00277 0.95461 1.70068 1.22046 1.30775 1.34027 0.85490 0.79349 0.78846 0.77656 1.19738 1.20554 1.18925 1.23977 0.84523 1.01182 0.95459 1.89157 1.27193 1.75054 1.39566 0.92116 0.89127 0.92042 0.87350 0.88256 0.73415 0.83346 0.83673 0.91586 0.91482 0.97794 0.97814 0.92636 0.88642 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.53 71.98 0.69 -0.96 16 2 C 0.06 0.84 3.92 31.10 0.12 0.96 16 3 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.15 -1.84 6.39 31.61 0.20 -1.64 16 5 C 0.11 1.86 3.55 46.01 0.16 2.02 16 6 H 0.11 1.71 7.24 -2.38 -0.02 1.69 16 7 N -1.10 -19.07 5.39 -165.16 -0.89 -19.96 16 8 S 2.63 69.04 5.40 -56.49 -0.31 68.74 16 9 O -0.99 -31.84 17.82 -127.65 -2.27 -34.12 16 10 O -0.99 -32.17 18.08 -127.65 -2.31 -34.48 16 11 C -0.61 -17.01 5.97 71.98 0.43 -16.58 16 12 C -0.11 -4.23 5.16 30.59 0.16 -4.07 16 13 C 0.03 1.55 4.97 29.85 0.15 1.70 16 14 C -0.55 -31.19 9.11 25.60 0.23 -30.96 16 15 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 16 C 0.00 0.17 5.46 84.65 0.46 0.64 16 17 N -0.93 -55.23 13.29 21.45 0.28 -54.94 16 18 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 22 C 0.03 0.54 7.35 72.48 0.53 1.07 16 23 O -0.39 -8.07 11.34 -148.98 -1.69 -9.76 16 24 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.75 8.12 -2.39 -0.02 0.73 16 27 H 0.11 0.89 7.78 -2.39 -0.02 0.87 16 28 H 0.10 1.06 7.86 -2.39 -0.02 1.04 16 29 H 0.43 5.46 8.60 -96.75 -0.83 4.63 16 30 H 0.15 3.58 8.14 -2.39 -0.02 3.56 16 31 H 0.15 3.48 7.47 -2.39 -0.02 3.46 16 32 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.00 0.18 8.14 -2.39 -0.02 0.17 16 36 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 37 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.07 1.32 8.06 -2.39 -0.02 1.30 16 Total: -1.00 -74.36 328.03 -1.81 -76.17 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.21 Total: 10.25 kcal Atomic # 6 Polarization: -50.96 SS G_CDS: 3.14 Total: -47.82 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -0.60 Total: -74.90 kcal Atomic # 8 Polarization: -72.08 SS G_CDS: -6.27 Total: -78.36 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 69.04 SS G_CDS: -0.31 Total: 68.74 kcal Total: -74.36 -1.81 -76.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580321276.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.716 kcal (2) G-P(sol) polarization free energy of solvation -74.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds