Wall clock time and date at job start Mon Mar 30 2020 02:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.55192 * 2 1 4 4 C 1.55349 * 110.71845 * 122.97857 * 2 1 3 5 5 C 1.54809 * 101.92861 * 155.61146 * 4 2 1 6 6 H 1.09006 * 110.48019 * 220.33568 * 5 4 2 7 7 N 1.46502 * 110.49168 * 97.82485 * 5 4 2 8 8 S 1.65595 * 120.00123 * 146.84008 * 7 5 4 9 9 O 1.42093 * 104.27935 * 308.92604 * 8 7 5 10 10 O 1.42105 * 104.27413 * 181.06655 * 8 7 5 11 11 C 1.81401 * 104.44822 * 65.00073 * 8 7 5 12 12 C 1.52997 * 109.47149 * 179.97438 * 11 8 7 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 8 14 14 C 1.50698 * 109.47592 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00057 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00356 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00113 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99923 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47375 * 89.99678 * 18 16 14 20 20 H 1.48508 * 109.47196 * 209.99673 * 18 16 14 21 21 H 1.48504 * 109.47051 * 329.99297 * 18 16 14 22 22 C 1.54093 * 104.30576 * 339.07529 * 5 4 2 23 23 O 1.43742 * 107.29727 * 358.03999 * 22 5 4 24 24 H 1.09001 * 109.47414 * 181.42631 * 1 2 3 25 25 H 1.09003 * 109.47124 * 301.42344 * 1 2 3 26 26 H 1.08996 * 109.47335 * 61.42633 * 1 2 3 27 27 H 1.08998 * 110.96200 * 37.47246 * 4 2 1 28 28 H 1.09001 * 111.00582 * 273.76174 * 4 2 1 29 29 H 0.96997 * 119.99542 * 326.83993 * 7 5 4 30 30 H 1.09002 * 109.47085 * 299.99812 * 11 8 7 31 31 H 1.09001 * 109.47417 * 59.99938 * 11 8 7 32 32 H 1.09002 * 109.47153 * 299.99990 * 12 11 8 33 33 H 1.08998 * 109.47533 * 59.99620 * 12 11 8 34 34 H 1.09002 * 109.47103 * 300.00247 * 13 12 11 35 35 H 1.09001 * 109.47066 * 60.00169 * 13 12 11 36 36 H 0.97008 * 120.00167 * 179.97438 * 17 16 14 37 37 H 1.09002 * 109.87791 * 117.46353 * 22 5 4 38 38 H 1.09000 * 109.88454 * 238.61642 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0796 -0.7909 1.2189 5 6 3.4831 -1.2128 0.7201 6 1 3.7060 -2.2346 1.0278 7 7 4.5049 -0.2923 1.2248 8 16 6.0223 -0.8529 1.5788 9 8 5.7940 -1.9746 2.4207 10 8 6.7164 0.2918 2.0556 11 6 6.6933 -1.3837 -0.0208 12 6 8.1097 -1.9279 0.1756 13 6 8.6754 -2.3761 -1.1734 14 6 10.0707 -2.9116 -0.9801 15 1 10.5100 -2.9307 0.0064 16 6 10.7862 -3.3781 -2.0624 17 7 12.0041 -3.8449 -1.8938 18 14 10.0263 -3.3457 -3.7686 19 1 10.3464 -2.0546 -4.4287 20 1 10.5756 -4.4643 -4.5764 21 1 8.5528 -3.4928 -3.6570 22 6 3.3851 -1.1210 -0.8149 23 8 2.0384 -0.7336 -1.1349 24 1 -0.3634 -1.0273 0.0256 25 1 -0.3633 0.5358 0.8770 26 1 -0.3634 0.4915 -0.9024 27 1 1.4620 -1.6645 1.4275 28 1 2.1554 -0.1509 2.0980 29 1 4.2925 0.6456 1.3516 30 1 6.0586 -2.1644 -0.4400 31 1 6.7223 -0.5338 -0.7027 32 1 8.7441 -1.1469 0.5946 33 1 8.0812 -2.7776 0.8576 34 1 8.0408 -3.1573 -1.5920 35 1 8.7040 -1.5266 -1.8558 36 1 12.5074 -4.1735 -2.6552 37 1 4.0844 -0.3721 -1.1868 38 1 3.6071 -2.0913 -1.2593 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580321277.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:10 Heat of formation + Delta-G solvation = -134.483130 kcal Electronic energy + Delta-G solvation = -19980.318881 eV Core-core repulsion = 16756.479770 eV Total energy + Delta-G solvation = -3223.839111 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.01222 -37.04000 -35.91119 -35.15269 -34.86423 -32.43729 -32.23493 -29.62957 -28.44534 -26.42734 -23.64239 -22.11881 -21.53257 -20.58009 -19.50874 -17.76782 -17.27075 -16.92510 -16.12103 -15.96792 -15.81810 -15.46533 -15.10782 -14.37671 -14.21445 -13.50534 -13.26149 -12.93792 -12.87289 -12.63045 -12.39036 -12.23857 -12.16591 -12.00801 -11.95939 -11.83430 -11.62480 -11.49450 -11.14135 -11.01384 -10.97134 -10.14272 -10.05396 -9.98544 -9.87209 -9.48636 -9.28248 -8.60684 -6.10291 -4.09856 0.29038 2.63948 3.25461 3.33286 3.34816 3.47645 3.78668 4.02312 4.24639 4.31003 4.38655 4.53480 4.73047 4.76069 4.79793 4.96420 4.99178 5.12354 5.23404 5.23933 5.28773 5.40081 5.52947 5.61798 5.68705 5.76198 5.79014 6.09342 6.21440 6.48574 6.62939 6.73445 7.09474 7.23455 7.68801 8.45373 8.93982 9.50716 11.02981 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022935 B = 0.004299 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.557862 B = 6511.080393 C = 7455.321498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 H 0.071 0.929 4 C -0.153 4.153 5 C 0.111 3.889 6 H 0.113 0.887 7 N -1.116 6.116 8 S 2.600 3.400 9 O -0.958 6.958 10 O -0.958 6.958 11 C -0.616 4.616 12 C -0.097 4.097 13 C -0.004 4.004 14 C -0.528 4.528 15 H 0.075 0.925 16 C 0.068 3.932 17 N -0.900 5.900 18 Si 0.880 3.120 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.266 1.266 22 C 0.024 3.976 23 O -0.370 6.370 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.416 0.584 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.020 0.980 35 H 0.016 0.984 36 H 0.264 0.736 37 H 0.071 0.929 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.362 8.171 3.796 25.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.089 0.911 4 C -0.192 4.192 5 C 0.003 3.997 6 H 0.131 0.869 7 N -0.873 5.873 8 S 2.696 3.304 9 O -0.948 6.948 10 O -0.949 6.949 11 C -0.748 4.748 12 C -0.137 4.137 13 C -0.043 4.043 14 C -0.566 4.566 15 H 0.093 0.907 16 C -0.134 4.134 17 N -0.539 5.539 18 Si 0.708 3.292 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.190 1.190 22 C -0.055 4.055 23 O -0.289 6.289 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.250 0.750 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.039 0.961 35 H 0.034 0.966 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -22.912 7.836 4.374 24.607 hybrid contribution -0.239 0.357 -1.510 1.570 sum -23.151 8.194 2.864 24.724 Atomic orbital electron populations 1.21773 0.92945 1.03092 1.02572 1.23250 0.95394 0.95435 0.84865 0.91087 1.23523 0.94820 1.01821 0.99013 1.22193 0.89321 0.94720 0.93511 0.86921 1.55873 1.28590 1.19344 1.83512 1.05345 0.72895 0.74548 0.77629 1.93583 1.83786 1.54139 1.63256 1.93597 1.72368 1.49803 1.79103 1.30657 1.10400 1.11936 1.21785 1.21315 0.88797 1.00781 1.02767 1.19528 0.96989 0.96208 0.91561 1.21128 0.97606 1.41369 0.96494 0.90730 1.25025 0.94661 0.94584 0.99127 1.69910 1.10552 1.42122 1.31271 0.86775 0.80052 0.77914 0.84504 1.20212 1.21245 1.19043 1.23930 0.85229 1.01887 0.94477 1.88919 1.27332 1.73721 1.38924 0.91623 0.91043 0.91737 0.88958 0.89063 0.75042 0.85515 0.85139 0.90933 0.90908 0.96150 0.96592 0.92596 0.91045 0.88562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.67 37.16 0.36 -0.52 16 2 C 0.07 0.51 3.98 -25.48 -0.10 0.41 16 3 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.15 -1.07 6.28 -24.53 -0.15 -1.23 16 5 C 0.11 0.95 3.60 -66.41 -0.24 0.71 16 6 H 0.11 0.97 7.55 -51.93 -0.39 0.57 16 7 N -1.12 -10.34 5.28 -3.59 -0.02 -10.35 16 8 S 2.60 34.51 5.44 -107.50 -0.58 33.92 16 9 O -0.96 -15.61 17.43 -57.54 -1.00 -16.61 16 10 O -0.96 -15.72 18.08 -57.54 -1.04 -16.76 16 11 C -0.62 -8.35 6.07 37.16 0.23 -8.12 16 12 C -0.10 -1.83 5.16 -26.74 -0.14 -1.97 16 13 C 0.00 -0.10 4.04 -27.89 -0.11 -0.21 16 14 C -0.53 -14.89 9.66 -34.44 -0.33 -15.22 16 15 H 0.07 2.26 7.99 -52.48 -0.42 1.84 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 18 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 22 C 0.02 0.21 7.48 37.73 0.28 0.49 16 23 O -0.37 -3.74 11.22 -35.23 -0.40 -4.13 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.09 0.58 8.07 -51.93 -0.42 0.16 16 28 H 0.09 0.55 8.06 -51.93 -0.42 0.14 16 29 H 0.42 3.06 8.82 -34.47 -0.30 2.76 16 30 H 0.13 1.44 8.12 -51.92 -0.42 1.02 16 31 H 0.13 1.51 8.14 -51.92 -0.42 1.09 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 35 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.07 0.60 7.93 -51.93 -0.41 0.19 16 38 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 325.79 15.07 4.91 4.91 Total: -1.00 -35.76 325.79 -8.44 -44.20 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -6.10 Total: -1.16 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -0.31 Total: -23.80 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.75 Total: -37.18 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -2.44 Total: -37.50 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Atomic # 16 Polarization: 34.51 SS G_CDS: -0.58 Total: 33.92 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.76 -8.44 -44.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580321277.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.284 kcal (2) G-P(sol) polarization free energy of solvation -35.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds