Wall clock time and date at job start Mon Mar 30 2020 01:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47350 * 2 1 4 4 H 1.09001 * 109.47448 * 54.66680 * 3 2 1 5 5 C 1.50697 * 109.47481 * 174.67356 * 3 2 1 6 6 H 1.07995 * 120.00216 * 119.99424 * 5 3 2 7 7 C 1.37880 * 120.00003 * 300.00241 * 5 3 2 8 8 N 1.31506 * 120.00004 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 119.99611 * 359.97438 * 7 5 3 10 10 H 1.48493 * 109.47147 * 90.00722 * 9 7 5 11 11 H 1.48505 * 109.46736 * 210.00575 * 9 7 5 12 12 H 1.48499 * 109.47339 * 330.00150 * 9 7 5 13 13 N 1.46509 * 109.46771 * 294.67185 * 3 2 1 14 14 S 1.65595 * 119.99718 * 143.79918 * 13 3 2 15 15 O 1.42109 * 104.27542 * 179.37135 * 14 13 3 16 16 O 1.42097 * 104.28012 * 307.23049 * 14 13 3 17 17 C 1.81396 * 104.44944 * 63.30283 * 14 13 3 18 18 C 1.53002 * 109.47270 * 179.97438 * 17 14 13 19 19 C 1.53006 * 112.99759 * 50.33383 * 18 17 14 20 20 C 1.54038 * 113.81765 * 278.50977 * 18 17 14 21 21 O 1.44449 * 85.42404 * 223.23267 * 20 18 17 22 22 C 1.44180 * 93.37819 * 24.09031 * 21 20 18 23 23 H 1.09001 * 109.46944 * 175.45351 * 1 2 3 24 24 H 1.08995 * 109.46979 * 295.45550 * 1 2 3 25 25 H 1.09000 * 109.46799 * 55.45041 * 1 2 3 26 26 H 1.08999 * 109.47651 * 239.99783 * 2 1 3 27 27 H 1.09006 * 109.47403 * 119.99508 * 2 1 3 28 28 H 0.97006 * 119.99676 * 179.97438 * 8 7 5 29 29 H 0.96996 * 119.99835 * 323.80009 * 13 3 2 30 30 H 1.08998 * 109.47464 * 299.99510 * 17 14 13 31 31 H 1.09007 * 109.47395 * 60.00262 * 17 14 13 32 32 H 1.09004 * 109.46586 * 60.00072 * 19 18 17 33 33 H 1.08999 * 109.47312 * 179.97438 * 19 18 17 34 34 H 1.08999 * 109.47054 * 300.00155 * 19 18 17 35 35 H 1.08997 * 113.86632 * 337.33522 * 20 18 17 36 36 H 1.08998 * 113.86075 * 109.05054 * 20 18 17 37 37 H 1.09006 * 113.86172 * 221.76333 * 22 21 20 38 38 H 1.08995 * 113.98561 * 90.07792 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6009 1.9832 0.8384 5 6 3.5413 1.4446 0.1319 6 1 4.1507 1.8876 -0.6418 7 6 4.1367 0.8807 1.2403 8 7 5.4467 0.8830 1.3556 9 14 3.0825 0.1149 2.5788 10 1 2.8624 -1.3217 2.2743 11 1 3.7732 0.2434 3.8871 12 1 1.7739 0.8144 2.6392 13 7 1.6592 2.0951 -1.2552 14 16 1.2339 3.6954 -1.2605 15 8 0.9492 3.9779 -2.6238 16 8 0.2239 3.7930 -0.2657 17 6 2.7353 4.5646 -0.7306 18 6 2.4674 6.0706 -0.6955 19 6 1.1997 6.4343 0.0803 20 6 2.5713 6.7531 -2.0725 21 8 3.2910 7.7926 -1.3740 22 6 3.6975 6.9123 -0.3069 23 1 -0.3633 -1.0245 -0.0815 24 1 -0.3633 0.4417 0.9279 25 1 -0.3633 0.5828 -0.8464 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 5.8656 0.4866 2.1357 29 1 1.6563 1.5897 -2.0831 30 1 3.0210 4.2229 0.2642 31 1 3.5429 4.3559 -1.4324 32 1 1.2931 6.0905 1.1104 33 1 1.0648 7.5158 0.0693 34 1 0.3386 5.9556 -0.3859 35 1 3.1782 6.2038 -2.7923 36 1 1.6124 7.0752 -2.4784 37 1 3.6299 7.3605 0.6844 38 1 4.6489 6.4109 -0.4843 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583416139.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:14 Heat of formation + Delta-G solvation = -112.526346 kcal Electronic energy + Delta-G solvation = -21239.717795 eV Core-core repulsion = 18016.830801 eV Total energy + Delta-G solvation = -3222.886993 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.69268 -38.29420 -37.82218 -36.98140 -34.53456 -34.24296 -32.59670 -29.08341 -28.83867 -27.62034 -26.74198 -24.49479 -22.32109 -20.61399 -19.94077 -19.07158 -18.56712 -17.67585 -17.41715 -17.04462 -16.75691 -16.58488 -16.18182 -15.71730 -15.23167 -14.72751 -14.51649 -14.31279 -13.98728 -13.73807 -13.62173 -13.27271 -13.15571 -13.05908 -12.99394 -12.84006 -12.73525 -12.56578 -12.44493 -12.23480 -11.76135 -11.63520 -11.63245 -11.28029 -11.16799 -10.71578 -10.69989 -10.01291 -8.29774 -6.34965 -0.59136 1.32700 1.41472 1.47805 1.88843 2.31608 2.58473 2.76829 2.98733 3.05264 3.34184 3.48902 3.69012 4.04816 4.22093 4.27804 4.28738 4.36112 4.48643 4.50619 4.61049 4.66355 4.68440 4.77664 4.89260 4.94566 5.02441 5.07021 5.08503 5.14884 5.17184 5.35828 5.53726 5.57152 6.24445 6.38872 6.72780 7.32097 8.84689 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020056 B = 0.007295 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.746020 B = 3837.080106 C = 4609.079929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.137 4.137 3 C 0.246 3.754 4 H 0.043 0.957 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.031 3.969 8 N -0.933 5.933 9 Si 0.919 3.081 10 H -0.264 1.264 11 H -0.299 1.299 12 H -0.246 1.246 13 N -1.099 6.099 14 S 2.622 3.378 15 O -0.989 6.989 16 O -0.985 6.985 17 C -0.605 4.605 18 C -0.127 4.127 19 C -0.160 4.160 20 C 0.031 3.969 21 O -0.393 6.393 22 C 0.055 3.945 23 H 0.069 0.931 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.267 0.733 29 H 0.417 0.583 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.886 6.551 -2.828 9.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.176 4.176 3 C 0.139 3.861 4 H 0.061 0.939 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.169 4.169 8 N -0.572 5.572 9 Si 0.746 3.254 10 H -0.190 1.190 11 H -0.227 1.227 12 H -0.169 1.169 13 N -0.858 5.858 14 S 2.717 3.283 15 O -0.980 6.980 16 O -0.975 6.975 17 C -0.737 4.737 18 C -0.129 4.129 19 C -0.217 4.217 20 C -0.045 4.045 21 O -0.312 6.312 22 C -0.022 4.022 23 H 0.088 0.912 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.251 0.749 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.579 7.203 -2.844 10.836 hybrid contribution 0.867 -1.138 0.658 1.575 sum -6.712 6.065 -2.186 9.307 Atomic orbital electron populations 1.21836 0.95158 1.02104 1.01876 1.22106 0.96043 0.97688 1.01753 1.18841 0.93351 0.91724 0.82227 0.93880 1.21675 0.91087 1.38486 1.06027 0.92046 1.25557 0.95512 0.95974 0.99896 1.69987 1.10514 1.46273 1.30438 0.86301 0.80219 0.80257 0.78585 1.19034 1.22715 1.16941 1.55158 1.86180 1.27948 1.16497 1.04328 0.76867 0.73652 0.73436 1.93521 1.84942 1.84677 1.34821 1.93536 1.55415 1.86093 1.62427 1.30520 1.22030 1.06152 1.14959 1.23575 0.99629 0.91173 0.98513 1.22049 0.93835 1.04411 1.01445 1.24503 0.98492 0.87671 0.93873 1.89670 1.72493 1.30177 1.38830 1.24187 0.96045 0.88680 0.93291 0.91228 0.93513 0.92208 0.90713 0.93353 0.92417 0.74882 0.83729 0.83694 0.89917 0.88675 0.92217 0.88423 0.87398 0.86954 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.84 9.85 71.98 0.71 -4.13 16 2 C -0.14 -5.12 5.04 30.60 0.15 -4.96 16 3 C 0.25 10.01 1.74 44.24 0.08 10.09 16 4 H 0.04 1.83 6.59 -2.39 -0.02 1.82 16 5 C -0.53 -25.71 8.79 25.60 0.23 -25.49 16 6 H 0.06 3.17 8.06 -2.91 -0.02 3.15 16 7 C 0.03 1.57 5.45 84.66 0.46 2.03 16 8 N -0.93 -52.29 13.96 21.45 0.30 -51.99 16 9 Si 0.92 40.26 24.41 68.60 1.67 41.93 16 10 H -0.26 -11.09 6.83 99.48 0.68 -10.41 16 11 H -0.30 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.25 -10.11 6.53 99.48 0.65 -9.46 16 13 N -1.10 -38.65 4.73 -172.51 -0.82 -39.47 16 14 S 2.62 88.14 4.68 -56.49 -0.26 87.88 16 15 O -0.99 -35.09 18.08 -127.65 -2.31 -37.40 16 16 O -0.98 -37.17 15.33 -127.65 -1.96 -39.13 16 17 C -0.61 -18.08 5.22 71.98 0.38 -17.70 16 18 C -0.13 -3.34 1.06 -51.48 -0.05 -3.40 16 19 C -0.16 -4.05 8.25 71.98 0.59 -3.45 16 20 C 0.03 0.78 8.37 72.30 0.61 1.39 16 21 O -0.39 -10.60 12.38 -148.98 -1.84 -12.44 16 22 C 0.06 1.34 8.37 72.30 0.60 1.94 16 23 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.06 1.81 7.64 -2.39 -0.02 1.80 16 26 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.05 1.92 3.22 -2.38 -0.01 1.91 16 28 H 0.27 14.22 8.31 -92.70 -0.77 13.45 16 29 H 0.42 13.01 8.81 -96.75 -0.85 12.16 16 30 H 0.14 4.64 7.84 -2.39 -0.02 4.62 16 31 H 0.14 4.04 7.98 -2.39 -0.02 4.02 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.09 2.02 8.09 -2.39 -0.02 2.00 16 34 H 0.06 1.63 5.87 -2.39 -0.01 1.61 16 35 H 0.10 2.28 7.99 -2.39 -0.02 2.26 16 36 H 0.11 2.44 8.10 -2.39 -0.02 2.42 16 37 H 0.11 2.28 8.10 -2.38 -0.02 2.26 16 38 H 0.09 2.16 8.10 -2.39 -0.02 2.14 16 Total: -1.00 -61.89 313.42 -1.34 -63.24 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: 0.12 Total: 31.07 kcal Atomic # 6 Polarization: -47.43 SS G_CDS: 3.75 Total: -43.68 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -0.52 Total: -91.46 kcal Atomic # 8 Polarization: -82.86 SS G_CDS: -6.11 Total: -88.97 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 1.67 Total: 41.93 kcal Atomic # 16 Polarization: 88.14 SS G_CDS: -0.26 Total: 87.88 kcal Total: -61.89 -1.34 -63.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583416139.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.291 kcal (2) G-P(sol) polarization free energy of solvation -61.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds