Wall clock time and date at job start Mon Mar 30 2020 01:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47407 * 2 1 4 4 C 1.50703 * 109.47168 * 240.00000 * 2 1 3 5 5 H 1.08011 * 119.99714 * 240.00028 * 4 2 1 6 6 C 1.37877 * 120.00099 * 60.00176 * 4 2 1 7 7 N 1.31516 * 119.99970 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99779 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47442 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47062 * 120.00244 * 8 6 4 11 11 H 1.48501 * 109.46560 * 239.99621 * 8 6 4 12 12 C 1.53000 * 109.47068 * 119.99995 * 2 1 3 13 13 S 1.81398 * 109.47081 * 299.99937 * 12 2 1 14 14 O 1.42094 * 110.54160 * 68.37546 * 13 12 2 15 15 O 1.42102 * 110.54143 * 291.62245 * 13 12 2 16 16 N 1.65607 * 104.44820 * 179.97438 * 13 12 2 17 17 C 1.46503 * 119.99857 * 65.00387 * 16 13 12 18 18 H 1.09007 * 110.98591 * 339.19257 * 17 16 13 19 19 C 1.55300 * 111.12279 * 214.99904 * 17 16 13 20 20 C 1.54377 * 102.25502 * 207.90513 * 19 17 16 21 21 O 1.43245 * 107.58529 * 21.35358 * 20 19 17 22 22 C 1.43641 * 109.97106 * 1.71442 * 21 20 19 23 23 H 1.08995 * 109.47192 * 299.99874 * 1 2 3 24 24 H 1.09005 * 109.46981 * 60.00540 * 1 2 3 25 25 H 1.09002 * 109.46659 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47421 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.47056 * 299.99930 * 3 2 1 28 28 H 1.09002 * 109.47221 * 59.99793 * 3 2 1 29 29 H 0.96993 * 119.99858 * 179.97438 * 7 6 4 30 30 H 1.09010 * 109.47138 * 180.02562 * 12 2 1 31 31 H 1.09006 * 109.47399 * 60.00199 * 12 2 1 32 32 H 0.96997 * 120.00078 * 244.99791 * 16 13 12 33 33 H 1.09006 * 110.85287 * 89.71138 * 19 17 16 34 34 H 1.09007 * 110.84948 * 326.09707 * 19 17 16 35 35 H 1.09000 * 109.83189 * 261.84669 * 20 19 17 36 36 H 1.09004 * 109.91014 * 140.91129 * 20 19 17 37 37 H 1.08997 * 110.30942 * 94.48681 * 22 21 20 38 38 H 1.08999 * 110.30828 * 216.65652 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 3.1465 -2.2871 -3.6038 10 1 1.1662 -1.5867 -4.8161 11 1 3.1467 -0.1874 -4.8164 12 6 2.0400 -0.7212 1.2492 13 16 1.4353 0.1339 2.7303 14 8 0.0280 -0.0183 2.8543 15 8 2.0480 1.4100 2.8544 16 7 2.0529 -0.7409 3.9936 17 6 3.5014 -0.7982 4.2060 18 1 4.0402 -0.5469 3.2923 19 6 3.9332 -2.1887 4.7460 20 6 5.2062 -1.8472 5.5499 21 8 5.1525 -0.4528 5.8735 22 6 3.9316 0.1192 5.3782 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6767 1.9563 0.8900 29 1 0.7088 1.1612 -3.4844 30 1 3.1301 -0.7209 1.2495 31 1 1.6767 -1.7490 1.2493 32 1 1.4557 -1.2152 4.5930 33 1 4.1631 -2.8691 3.9260 34 1 3.1651 -2.6083 5.3957 35 1 6.0906 -2.0530 4.9470 36 1 5.2370 -2.4383 6.4652 37 1 3.1700 0.1189 6.1580 38 1 4.1070 1.1336 5.0200 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591820862.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:11 Heat of formation + Delta-G solvation = -145.613385 kcal Electronic energy + Delta-G solvation = -20944.422171 eV Core-core repulsion = 17720.100416 eV Total energy + Delta-G solvation = -3224.321755 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.42941 -38.12802 -38.10926 -36.91431 -35.93998 -33.63122 -31.53206 -29.31474 -28.31295 -27.68393 -27.24495 -23.43739 -22.62956 -21.43194 -20.36016 -18.95221 -17.97480 -17.85768 -17.25829 -16.88910 -16.61020 -16.49045 -15.86819 -15.12080 -14.97865 -14.60245 -14.51121 -14.41781 -14.01972 -13.82765 -13.30616 -13.08561 -13.03338 -12.90646 -12.76040 -12.63308 -12.50160 -12.42111 -12.18602 -12.11123 -11.95369 -11.85444 -11.55585 -11.38344 -10.71545 -10.54075 -10.41734 -10.31448 -8.02780 -6.21251 -0.64452 1.43444 1.46850 1.55867 1.80261 2.44479 2.80158 2.99176 3.19836 3.29797 3.42861 3.81883 3.92435 3.98096 4.09685 4.23289 4.29082 4.37709 4.60809 4.78922 4.82587 4.87162 4.87885 4.92949 4.99509 5.03844 5.09389 5.21407 5.39829 5.51384 5.65655 5.96374 5.98463 6.09462 6.12503 6.34560 6.84125 7.47379 8.97244 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.025455 B = 0.005347 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.705243 B = 5235.010811 C = 5790.133387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.068 3.932 3 C -0.160 4.160 4 C -0.515 4.515 5 H 0.065 0.935 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.954 3.046 9 H -0.264 1.264 10 H -0.285 1.285 11 H -0.285 1.285 12 C -0.585 4.585 13 S 2.612 3.388 14 O -0.990 6.990 15 O -0.988 6.988 16 N -1.098 6.098 17 C 0.108 3.892 18 H 0.108 0.892 19 C -0.155 4.155 20 C 0.043 3.957 21 O -0.403 6.403 22 C 0.034 3.966 23 H 0.032 0.968 24 H 0.069 0.931 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.261 0.739 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.427 0.573 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.140 -7.753 13.943 17.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.066 3.934 3 C -0.218 4.218 4 C -0.554 4.554 5 H 0.083 0.917 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.780 3.220 9 H -0.188 1.188 10 H -0.211 1.211 11 H -0.211 1.211 12 C -0.717 4.717 13 S 2.709 3.291 14 O -0.980 6.980 15 O -0.977 6.977 16 N -0.858 5.858 17 C 0.000 4.000 18 H 0.125 0.875 19 C -0.194 4.194 20 C -0.034 4.034 21 O -0.322 6.322 22 C -0.045 4.045 23 H 0.051 0.949 24 H 0.088 0.912 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.156 0.844 31 H 0.159 0.841 32 H 0.263 0.737 33 H 0.127 0.873 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.790 -6.656 13.930 16.488 hybrid contribution -0.014 -0.832 -1.223 1.479 sum 5.776 -7.487 12.707 15.840 Atomic orbital electron populations 1.22211 0.97788 1.00537 1.01306 1.17934 0.92330 0.92167 0.90987 1.22212 0.99874 0.98389 1.01359 1.21331 1.31502 1.12244 0.90313 0.91708 1.25676 0.95210 0.95648 1.01699 1.69953 1.37261 1.23771 1.23746 0.85570 0.78000 0.78745 0.79678 1.18845 1.21080 1.21097 1.30454 1.12602 1.13524 1.15158 1.04827 0.73515 0.74911 0.75828 1.93517 1.31306 1.87003 1.86199 1.93523 1.78368 1.39934 1.85898 1.55309 1.13762 1.70419 1.46308 1.22602 0.79997 0.97332 1.00064 0.87457 1.23468 0.98399 0.95854 1.01709 1.23332 0.98342 0.81569 1.00126 1.88414 1.39971 1.24085 1.79718 1.23866 0.86989 0.97978 0.95628 0.94892 0.91182 0.94015 0.94017 0.91237 0.94768 0.92990 0.84424 0.84115 0.73655 0.87252 0.88121 0.89849 0.89522 0.90763 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.79 7.78 71.98 0.56 -7.23 16 2 C 0.07 3.17 0.52 -52.93 -0.03 3.14 16 3 C -0.16 -7.78 7.77 71.98 0.56 -7.22 16 4 C -0.51 -26.03 8.01 25.60 0.21 -25.82 16 5 H 0.06 3.13 7.74 -2.90 -0.02 3.10 16 6 C 0.02 0.88 5.15 84.65 0.44 1.32 16 7 N -0.91 -49.74 9.35 21.45 0.20 -49.54 16 8 Si 0.95 41.40 29.54 68.60 2.03 43.42 16 9 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 C -0.58 -20.56 4.94 71.98 0.36 -20.20 16 13 S 2.61 87.94 4.42 -56.49 -0.25 87.69 16 14 O -0.99 -38.89 15.70 -127.65 -2.00 -40.89 16 15 O -0.99 -38.84 15.44 -127.65 -1.97 -40.81 16 16 N -1.10 -24.80 5.51 -163.36 -0.90 -25.70 16 17 C 0.11 2.20 3.54 46.44 0.16 2.36 16 18 H 0.11 2.18 7.36 -2.38 -0.02 2.16 16 19 C -0.16 -2.09 6.70 31.85 0.21 -1.88 16 20 C 0.04 0.64 7.79 72.45 0.56 1.20 16 21 O -0.40 -9.07 11.36 -148.98 -1.69 -10.76 16 22 C 0.03 0.75 7.48 72.65 0.54 1.30 16 23 H 0.03 1.52 5.46 -2.39 -0.01 1.51 16 24 H 0.07 3.75 6.07 -2.38 -0.01 3.73 16 25 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.07 3.72 6.07 -2.38 -0.01 3.70 16 28 H 0.03 1.57 5.46 -2.39 -0.01 1.56 16 29 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 30 H 0.14 4.20 7.57 -2.38 -0.02 4.18 16 31 H 0.14 4.33 8.14 -2.39 -0.02 4.31 16 32 H 0.43 7.53 8.79 -96.74 -0.85 6.68 16 33 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.10 1.06 8.05 -2.38 -0.02 1.04 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 38 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -66.93 308.34 -0.80 -67.74 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.21 Total: 21.88 kcal Atomic # 6 Polarization: -56.61 SS G_CDS: 3.57 Total: -53.03 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -0.70 Total: -75.23 kcal Atomic # 8 Polarization: -86.79 SS G_CDS: -5.67 Total: -92.46 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: 87.94 SS G_CDS: -0.25 Total: 87.69 kcal Total: -66.93 -0.80 -67.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591820862.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.878 kcal (2) G-P(sol) polarization free energy of solvation -66.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds