Wall clock time and date at job start Mon Mar 30 2020 01:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46555 * 2 1 4 4 C 1.53004 * 109.46881 * 179.97438 * 3 2 1 5 5 S 1.81400 * 109.47133 * 179.97438 * 4 3 2 6 6 O 1.42096 * 110.54348 * 68.37639 * 5 4 3 7 7 O 1.42093 * 110.54020 * 291.62113 * 5 4 3 8 8 N 1.65606 * 104.44901 * 179.97438 * 5 4 3 9 9 C 1.47466 * 125.62891 * 270.00224 * 8 5 4 10 10 C 1.54910 * 104.80919 * 204.07016 * 9 8 5 11 11 C 1.55157 * 101.61758 * 323.03944 * 10 9 8 12 12 O 1.42903 * 110.72085 * 276.94625 * 11 10 9 13 13 C 1.50695 * 110.72021 * 153.84513 * 11 10 9 14 14 H 1.07997 * 120.00293 * 5.09451 * 13 11 10 15 15 C 1.37874 * 119.99812 * 185.08819 * 13 11 10 16 16 N 1.31518 * 119.99846 * 183.79377 * 15 13 11 17 17 Si 1.86793 * 120.00156 * 3.79890 * 15 13 11 18 18 H 1.48499 * 109.47613 * 84.82943 * 17 15 13 19 19 H 1.48508 * 109.47019 * 204.82869 * 17 15 13 20 20 H 1.48502 * 109.46948 * 324.82330 * 17 15 13 21 21 C 1.47020 * 125.64790 * 89.99505 * 8 5 4 22 22 H 1.08998 * 109.47801 * 300.00202 * 1 2 3 23 23 H 1.09003 * 109.46808 * 60.00847 * 1 2 3 24 24 H 1.09002 * 109.46833 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47389 * 240.00116 * 2 1 3 26 26 H 1.09003 * 109.46808 * 119.99153 * 2 1 3 27 27 H 1.09001 * 109.47610 * 60.00110 * 3 2 1 28 28 H 1.09003 * 109.47395 * 299.99158 * 3 2 1 29 29 H 1.09003 * 109.47224 * 59.99422 * 4 3 2 30 30 H 1.08997 * 109.46869 * 300.00007 * 4 3 2 31 31 H 1.09003 * 110.35141 * 85.24990 * 9 8 5 32 32 H 1.09008 * 110.40222 * 322.91577 * 9 8 5 33 33 H 1.09004 * 111.00220 * 204.94438 * 10 9 8 34 34 H 1.08996 * 111.00339 * 81.13816 * 10 9 8 35 35 H 0.96699 * 113.99639 * 298.54826 * 12 11 10 36 36 H 0.96999 * 120.00043 * 180.02562 * 16 15 13 37 37 H 1.09006 * 109.88021 * 59.56446 * 21 8 5 38 38 H 1.09000 * 109.88636 * 298.39780 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 16 4.1745 3.1530 -0.0001 6 8 3.8779 3.7872 1.2363 7 8 3.8789 3.7857 -1.2376 8 7 5.8242 3.0081 0.0014 9 6 6.6789 2.9338 1.2008 10 6 8.0697 3.4245 0.7269 11 6 8.1394 2.8307 -0.7049 12 8 8.5700 1.4686 -0.6669 13 6 9.0516 3.6521 -1.5790 14 1 9.6115 4.4725 -1.1548 15 6 9.1716 3.3563 -2.9202 16 7 10.0231 4.0244 -3.6674 17 14 8.1247 2.0066 -3.6763 18 1 6.8018 2.5620 -4.0593 19 1 8.8044 1.4702 -4.8828 20 1 7.9358 0.9145 -2.6879 21 6 6.6787 2.9321 -1.1926 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 1.6765 1.9564 0.8900 28 1 1.6766 1.9564 -0.8901 29 1 3.9337 0.9286 -0.8891 30 1 3.9328 0.9290 0.8908 31 1 6.7410 1.9061 1.5590 32 1 6.2927 3.5866 1.9837 33 1 8.8622 3.0200 1.3566 34 1 8.1118 4.5133 0.7008 35 1 9.4545 1.3460 -0.2959 36 1 10.1072 3.8166 -4.6111 37 1 6.5514 3.8301 -1.7973 38 1 6.4210 2.0492 -1.7774 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592072942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:49 Heat of formation + Delta-G solvation = -151.198459 kcal Electronic energy + Delta-G solvation = -20796.906385 eV Core-core repulsion = 17572.342443 eV Total energy + Delta-G solvation = -3224.563942 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.00641 -38.26970 -37.13056 -36.72259 -36.12857 -34.49798 -31.46807 -31.19005 -30.23835 -26.58442 -25.28992 -23.56137 -22.17473 -21.56133 -20.05064 -19.15732 -18.78777 -17.67820 -17.37412 -16.91953 -16.36062 -16.25549 -16.01171 -15.16923 -14.91120 -14.69089 -14.56508 -14.32896 -13.84182 -13.83347 -13.65638 -13.35438 -13.25724 -13.13025 -12.92985 -12.72461 -12.61728 -12.52079 -12.24814 -12.20291 -12.06260 -11.93956 -11.58188 -11.44890 -10.96889 -10.82056 -10.21933 -9.90989 -8.37557 -6.50841 -0.84584 1.35083 1.38840 1.56538 1.61565 2.35962 2.78722 2.96187 3.01782 3.47504 3.55045 3.70372 3.87767 3.99758 4.11132 4.23593 4.36910 4.38608 4.50951 4.52997 4.63786 4.68621 4.82967 4.85558 4.94926 5.02368 5.11454 5.17941 5.25523 5.25931 5.30907 5.41388 5.50599 5.56665 6.10330 6.61390 7.19200 7.34962 8.76885 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023143 B = 0.005911 C = 0.005386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.589153 B = 4735.943133 C = 5197.058915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.116 4.116 3 C -0.125 4.125 4 C -0.603 4.603 5 S 2.613 3.387 6 O -0.979 6.979 7 O -0.997 6.997 8 N -1.015 6.015 9 C 0.118 3.882 10 C -0.139 4.139 11 C 0.216 3.784 12 O -0.572 6.572 13 C -0.549 4.549 14 H 0.045 0.955 15 C 0.037 3.963 16 N -0.935 5.935 17 Si 0.910 3.090 18 H -0.280 1.280 19 H -0.298 1.298 20 H -0.200 1.200 21 C 0.127 3.873 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.144 0.856 30 H 0.163 0.837 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.381 0.619 36 H 0.267 0.733 37 H 0.054 0.946 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.648 -11.070 10.602 21.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.154 4.154 3 C -0.164 4.164 4 C -0.737 4.737 5 S 2.714 3.286 6 O -0.970 6.970 7 O -0.988 6.988 8 N -0.853 5.853 9 C -0.006 4.006 10 C -0.178 4.178 11 C 0.175 3.825 12 O -0.380 6.380 13 C -0.587 4.587 14 H 0.063 0.937 15 C -0.164 4.164 16 N -0.574 5.574 17 Si 0.735 3.265 18 H -0.206 1.206 19 H -0.225 1.225 20 H -0.122 1.122 21 C 0.001 3.999 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.163 0.837 30 H 0.181 0.819 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.230 0.770 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.710 -10.276 10.201 21.365 hybrid contribution 0.777 -0.313 -0.877 1.213 sum -14.933 -10.589 9.324 20.544 Atomic orbital electron populations 1.21843 0.94839 1.02643 1.02294 1.21505 0.96598 0.93936 1.03405 1.21576 0.89426 1.01343 1.04051 1.30478 1.06989 1.22176 1.14008 1.04743 0.71684 0.79271 0.72909 1.93521 1.83267 1.74556 1.45630 1.93537 1.83531 1.75035 1.46701 1.58503 1.22898 1.90244 1.13666 1.22220 0.89709 1.02535 0.86106 1.23254 0.97085 1.00813 0.96641 1.19762 0.89194 0.80700 0.92875 1.86394 1.38184 1.26916 1.86481 1.21599 1.26573 1.16379 0.94185 0.93668 1.25753 0.95249 0.97606 0.97774 1.70048 1.36871 1.43057 1.07408 0.86497 0.78580 0.82813 0.78604 1.20604 1.22548 1.12211 1.22009 0.91103 0.99912 0.86874 0.92107 0.92674 0.91429 0.91248 0.90345 0.89543 0.90628 0.83737 0.81941 0.88773 0.89504 0.88009 0.92045 0.76996 0.92388 0.92781 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.91 71.98 0.71 -1.25 16 2 C -0.12 -1.62 5.93 30.60 0.18 -1.44 16 3 C -0.12 -2.23 5.22 30.60 0.16 -2.07 16 4 C -0.60 -11.95 6.18 71.98 0.44 -11.51 16 5 S 2.61 81.13 5.65 -56.49 -0.32 80.81 16 6 O -0.98 -33.20 17.28 -127.65 -2.21 -35.41 16 7 O -1.00 -39.49 17.60 -127.65 -2.25 -41.73 16 8 N -1.02 -34.86 3.62 -506.30 -1.83 -36.69 16 9 C 0.12 3.47 7.07 86.85 0.61 4.08 16 10 C -0.14 -4.80 6.22 31.99 0.20 -4.60 16 11 C 0.22 9.18 0.68 -10.35 -0.01 9.18 16 12 O -0.57 -21.84 10.48 -148.98 -1.56 -23.40 16 13 C -0.55 -29.60 8.71 25.60 0.22 -29.37 16 14 H 0.05 2.69 8.03 -2.91 -0.02 2.66 16 15 C 0.04 2.07 5.47 84.65 0.46 2.54 16 16 N -0.94 -57.21 13.96 21.45 0.30 -56.92 16 17 Si 0.91 43.34 23.99 68.60 1.65 44.98 16 18 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 19 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 20 H -0.20 -8.63 5.40 99.48 0.54 -8.10 16 21 C 0.13 5.36 4.43 86.73 0.38 5.74 16 22 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.16 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.09 2.34 7.67 -2.38 -0.02 2.32 16 33 H 0.10 2.91 8.14 -2.38 -0.02 2.89 16 34 H 0.06 2.32 8.04 -2.39 -0.02 2.30 16 35 H 0.38 12.15 9.10 -74.06 -0.67 11.48 16 36 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16 37 H 0.05 2.62 7.64 -2.38 -0.02 2.60 16 38 H 0.06 2.41 5.68 -2.39 -0.01 2.40 16 Total: -1.00 -73.64 316.04 -2.65 -76.28 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.20 Total: 20.76 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 3.37 Total: -28.70 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -1.53 Total: -93.61 kcal Atomic # 8 Polarization: -94.52 SS G_CDS: -6.01 Total: -100.54 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.65 Total: 44.98 kcal Atomic # 16 Polarization: 81.13 SS G_CDS: -0.32 Total: 80.81 kcal Total: -73.64 -2.65 -76.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592072942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.914 kcal (2) G-P(sol) polarization free energy of solvation -73.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds