Wall clock time and date at job start Mon Mar 30 2020 01:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46900 * 2 1 4 4 C 1.52995 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47281 * 305.00109 * 4 3 2 6 6 C 1.53003 * 109.47519 * 184.99671 * 4 3 2 7 7 S 1.81403 * 109.46950 * 65.00019 * 4 3 2 8 8 O 1.42107 * 110.54326 * 68.37675 * 7 4 3 9 9 O 1.42098 * 110.54507 * 291.62488 * 7 4 3 10 10 N 1.65598 * 104.45069 * 180.02562 * 7 4 3 11 11 C 1.47579 * 134.49275 * 89.99775 * 10 7 4 12 12 C 1.53953 * 86.11613 * 155.35927 * 11 10 7 13 13 O 1.42891 * 113.74249 * 269.15295 * 12 11 10 14 14 C 1.50704 * 113.73748 * 137.95211 * 12 11 10 15 15 H 1.07998 * 120.00120 * 3.90458 * 14 12 11 16 16 C 1.37883 * 119.99782 * 183.91187 * 14 12 11 17 17 N 1.31513 * 120.00053 * 185.23007 * 16 14 12 18 18 Si 1.86796 * 119.99938 * 5.22387 * 16 14 12 19 19 H 1.48495 * 109.47550 * 270.00395 * 18 16 14 20 20 H 1.48511 * 109.47116 * 30.00543 * 18 16 14 21 21 H 1.48499 * 109.47060 * 149.99973 * 18 16 14 22 22 C 1.47582 * 134.49297 * 270.00215 * 10 7 4 23 23 H 1.09003 * 109.46633 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47120 * 299.99796 * 1 2 3 25 25 H 1.08997 * 109.47597 * 59.99822 * 1 2 3 26 26 H 1.08996 * 109.47117 * 240.00522 * 2 1 3 27 27 H 1.08997 * 109.46760 * 119.99799 * 2 1 3 28 28 H 1.08999 * 109.47467 * 59.99995 * 3 2 1 29 29 H 1.09005 * 109.47286 * 300.00166 * 3 2 1 30 30 H 1.08998 * 109.46850 * 300.00775 * 6 4 3 31 31 H 1.08999 * 109.46476 * 60.00408 * 6 4 3 32 32 H 1.08996 * 109.47120 * 180.02562 * 6 4 3 33 33 H 1.08998 * 113.77112 * 41.06368 * 11 10 7 34 34 H 1.09000 * 113.87384 * 269.67062 * 11 10 7 35 35 H 0.96707 * 113.99791 * 172.50486 * 13 12 11 36 36 H 0.97008 * 119.99681 * 354.94910 * 17 16 14 37 37 H 1.09003 * 113.77322 * 90.33595 * 22 10 7 38 38 H 1.09009 * 113.76717 * 318.93604 * 22 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8533 0.8426 6 6 4.0799 2.8796 0.1263 7 16 4.1753 0.7196 -1.5491 8 8 3.8796 1.5728 -2.6463 9 8 3.8793 -0.6693 -1.6005 10 7 5.8248 0.7803 -1.4168 11 6 6.8545 -0.1359 -0.8892 12 6 7.8306 0.5824 -1.8386 13 8 7.9266 -0.0217 -3.1300 14 6 9.1759 0.8688 -1.2225 15 1 9.3993 0.5175 -0.2260 16 6 10.1213 1.5796 -1.9311 17 7 11.3292 1.7413 -1.4367 18 14 9.6866 2.3125 -3.5933 19 1 9.9868 1.3270 -4.6628 20 1 8.2406 2.6498 -3.6227 21 1 10.4866 3.5437 -3.8159 22 6 6.8557 1.7723 -1.7790 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.7168 3.4689 -0.7157 31 1 3.7162 3.3140 1.0575 32 1 5.1699 2.8797 0.1263 33 1 6.6839 -1.1820 -1.1438 34 1 7.0788 0.0137 0.1669 35 1 8.4479 0.4883 -3.7650 36 1 11.5339 1.4246 -0.5429 37 1 7.0791 2.4840 -0.9843 38 1 6.6860 2.2498 -2.7441 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593578956.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:08 Heat of formation + Delta-G solvation = -92.253065 kcal Electronic energy + Delta-G solvation = -20992.876253 eV Core-core repulsion = 17770.868375 eV Total energy + Delta-G solvation = -3222.007878 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.89380 -36.81678 -36.63333 -35.60590 -34.39776 -32.58711 -32.35326 -28.01628 -26.92073 -25.66327 -24.22696 -22.59955 -21.56712 -19.75867 -18.41071 -18.00889 -17.39703 -16.60609 -15.92144 -15.52680 -15.19092 -14.57646 -14.29733 -13.86093 -13.63666 -13.47491 -13.21260 -13.05178 -12.83376 -12.52616 -12.34261 -12.17858 -12.02714 -11.77035 -11.71709 -11.64436 -11.25344 -11.15178 -10.99005 -10.85525 -10.71388 -10.34318 -10.13743 -9.75712 -9.41720 -9.02178 -8.64863 -8.24552 -6.68627 -4.45229 0.50029 2.92303 3.16518 3.21767 3.35753 4.07824 4.16876 4.20531 4.37920 4.59181 4.73598 4.79727 4.99430 5.04442 5.10802 5.24274 5.35796 5.53093 5.58324 5.59192 5.66427 5.68745 5.72709 5.87359 5.94219 5.98499 6.09564 6.12254 6.16473 6.37540 6.46877 6.58219 7.20840 7.54638 8.07920 8.52049 8.63720 9.29561 10.66666 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.036184 B = 0.005318 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.626675 B = 5263.764519 C = 5321.697328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.159 4.159 3 C -0.103 4.103 4 C -0.604 4.604 5 H 0.132 0.868 6 C -0.136 4.136 7 S 2.619 3.381 8 O -0.957 6.957 9 O -0.957 6.957 10 N -1.027 6.027 11 C 0.143 3.857 12 C 0.203 3.797 13 O -0.554 6.554 14 C -0.609 4.609 15 H 0.072 0.928 16 C 0.036 3.964 17 N -0.893 5.893 18 Si 1.025 2.975 19 H -0.275 1.275 20 H -0.263 1.263 21 H -0.280 1.280 22 C 0.084 3.916 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.354 0.646 36 H 0.273 0.727 37 H 0.088 0.912 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.592 1.589 4.172 16.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.196 4.196 3 C -0.142 4.142 4 C -0.712 4.712 5 H 0.150 0.850 6 C -0.194 4.194 7 S 2.714 3.286 8 O -0.948 6.948 9 O -0.948 6.948 10 N -0.867 5.867 11 C 0.018 3.982 12 C 0.160 3.840 13 O -0.363 6.363 14 C -0.648 4.648 15 H 0.090 0.910 16 C -0.172 4.172 17 N -0.526 5.526 18 Si 0.854 3.146 19 H -0.201 1.201 20 H -0.189 1.189 21 H -0.206 1.206 22 C -0.041 4.041 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.205 0.795 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.077 1.629 2.456 16.345 hybrid contribution -0.243 -0.088 1.986 2.003 sum -16.320 1.541 4.441 16.983 Atomic orbital electron populations 1.21735 0.95039 1.02073 1.01855 1.22013 0.97117 0.96086 1.04393 1.21447 0.90240 0.98214 1.04307 1.30640 1.05874 1.09469 1.25176 0.85016 1.21550 1.02190 0.91797 1.03870 1.04918 0.72465 0.74559 0.76657 1.93538 1.83474 1.69531 1.48247 1.93530 1.83239 1.31007 1.86986 1.60168 1.19671 1.30824 1.75995 1.22864 0.83085 0.94332 0.97877 1.20519 0.93101 0.88391 0.82009 1.86445 1.75412 1.51542 1.22934 1.22333 0.98497 1.39329 1.04627 0.91020 1.25789 0.92780 0.94242 1.04370 1.70783 1.18986 1.44724 1.18071 0.84387 0.76866 0.77937 0.75438 1.20146 1.18920 1.20600 1.24284 0.85180 0.94547 1.00090 0.92249 0.92656 0.92515 0.90042 0.90911 0.89836 0.90728 0.91038 0.90919 0.90762 0.90358 0.89475 0.79524 0.91669 0.89403 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.16 -1.81 5.62 -26.73 -0.15 -1.96 16 3 C -0.10 -1.15 4.68 -26.73 -0.13 -1.27 16 4 C -0.60 -7.62 3.03 -26.73 -0.08 -7.70 16 5 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 6 C -0.14 -1.59 9.07 37.16 0.34 -1.25 16 7 S 2.62 45.66 5.02 -107.50 -0.54 45.12 16 8 O -0.96 -19.11 17.91 -57.54 -1.03 -20.14 16 9 O -0.96 -18.61 15.77 -57.54 -0.91 -19.52 16 10 N -1.03 -19.50 3.69 -118.69 -0.44 -19.94 16 11 C 0.14 2.83 8.30 -2.97 -0.02 2.80 16 12 C 0.20 4.63 1.06 -90.84 -0.10 4.54 16 13 O -0.55 -13.21 13.42 -35.23 -0.47 -13.68 16 14 C -0.61 -15.54 9.04 -34.44 -0.31 -15.86 16 15 H 0.07 1.92 8.04 -52.49 -0.42 1.50 16 16 C 0.04 0.94 5.47 -17.82 -0.10 0.84 16 17 N -0.89 -25.27 13.70 55.43 0.76 -24.51 16 18 Si 1.03 22.42 24.79 -169.99 -4.21 18.21 16 19 H -0.27 -5.72 6.95 56.52 0.39 -5.33 16 20 H -0.26 -5.23 4.86 56.52 0.27 -4.96 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 C 0.08 1.70 6.67 -2.97 -0.02 1.68 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.08 1.11 5.61 -51.93 -0.29 0.82 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.84 8.11 -51.93 -0.42 0.41 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.90 6.98 -51.93 -0.36 0.54 16 33 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 34 H 0.09 1.51 8.09 -51.93 -0.42 1.09 16 35 H 0.35 7.87 4.23 45.56 0.19 8.06 16 36 H 0.27 7.65 8.72 -40.82 -0.36 7.30 16 37 H 0.09 1.60 7.60 -51.93 -0.39 1.21 16 38 H 0.08 1.55 6.54 -51.92 -0.34 1.21 16 LS Contribution 313.24 15.07 4.72 4.72 Total: -1.00 -31.31 313.24 -7.87 -39.18 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -5.55 Total: 9.75 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -0.20 Total: -19.19 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.32 Total: -44.45 kcal Atomic # 8 Polarization: -50.93 SS G_CDS: -2.41 Total: -53.34 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.21 Total: 18.21 kcal Atomic # 16 Polarization: 45.66 SS G_CDS: -0.54 Total: 45.12 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.31 -7.87 -39.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593578956.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.069 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds