Wall clock time and date at job start Mon Mar 30 2020 01:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46900 * 2 1 4 4 C 1.52995 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47281 * 305.00109 * 4 3 2 6 6 C 1.53003 * 109.47519 * 184.99671 * 4 3 2 7 7 S 1.81403 * 109.46950 * 65.00019 * 4 3 2 8 8 O 1.42107 * 110.54326 * 68.37675 * 7 4 3 9 9 O 1.42098 * 110.54507 * 291.62488 * 7 4 3 10 10 N 1.65598 * 104.45069 * 180.02562 * 7 4 3 11 11 C 1.47579 * 134.49275 * 89.99775 * 10 7 4 12 12 C 1.53953 * 86.11613 * 155.35927 * 11 10 7 13 13 O 1.42891 * 113.74249 * 269.15295 * 12 11 10 14 14 C 1.50704 * 113.73748 * 137.95211 * 12 11 10 15 15 H 1.07998 * 120.00120 * 3.90458 * 14 12 11 16 16 C 1.37883 * 119.99782 * 183.91187 * 14 12 11 17 17 N 1.31513 * 120.00053 * 185.23007 * 16 14 12 18 18 Si 1.86796 * 119.99938 * 5.22387 * 16 14 12 19 19 H 1.48495 * 109.47550 * 270.00395 * 18 16 14 20 20 H 1.48511 * 109.47116 * 30.00543 * 18 16 14 21 21 H 1.48499 * 109.47060 * 149.99973 * 18 16 14 22 22 C 1.47582 * 134.49297 * 270.00215 * 10 7 4 23 23 H 1.09003 * 109.46633 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47120 * 299.99796 * 1 2 3 25 25 H 1.08997 * 109.47597 * 59.99822 * 1 2 3 26 26 H 1.08996 * 109.47117 * 240.00522 * 2 1 3 27 27 H 1.08997 * 109.46760 * 119.99799 * 2 1 3 28 28 H 1.08999 * 109.47467 * 59.99995 * 3 2 1 29 29 H 1.09005 * 109.47286 * 300.00166 * 3 2 1 30 30 H 1.08998 * 109.46850 * 300.00775 * 6 4 3 31 31 H 1.08999 * 109.46476 * 60.00408 * 6 4 3 32 32 H 1.08996 * 109.47120 * 180.02562 * 6 4 3 33 33 H 1.08998 * 113.77112 * 41.06368 * 11 10 7 34 34 H 1.09000 * 113.87384 * 269.67062 * 11 10 7 35 35 H 0.96707 * 113.99791 * 172.50486 * 13 12 11 36 36 H 0.97008 * 119.99681 * 354.94910 * 17 16 14 37 37 H 1.09003 * 113.77322 * 90.33595 * 22 10 7 38 38 H 1.09009 * 113.76717 * 318.93604 * 22 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8533 0.8426 6 6 4.0799 2.8796 0.1263 7 16 4.1753 0.7196 -1.5491 8 8 3.8796 1.5728 -2.6463 9 8 3.8793 -0.6693 -1.6005 10 7 5.8248 0.7803 -1.4168 11 6 6.8545 -0.1359 -0.8892 12 6 7.8306 0.5824 -1.8386 13 8 7.9266 -0.0217 -3.1300 14 6 9.1759 0.8688 -1.2225 15 1 9.3993 0.5175 -0.2260 16 6 10.1213 1.5796 -1.9311 17 7 11.3292 1.7413 -1.4367 18 14 9.6866 2.3125 -3.5933 19 1 9.9868 1.3270 -4.6628 20 1 8.2406 2.6498 -3.6227 21 1 10.4866 3.5437 -3.8159 22 6 6.8557 1.7723 -1.7790 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.7168 3.4689 -0.7157 31 1 3.7162 3.3140 1.0575 32 1 5.1699 2.8797 0.1263 33 1 6.6839 -1.1820 -1.1438 34 1 7.0788 0.0137 0.1669 35 1 8.4479 0.4883 -3.7650 36 1 11.5339 1.4246 -0.5429 37 1 7.0791 2.4840 -0.9843 38 1 6.6860 2.2498 -2.7441 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593578956.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:07 Heat of formation + Delta-G solvation = -117.416118 kcal Electronic energy + Delta-G solvation = -20993.967405 eV Core-core repulsion = 17770.868375 eV Total energy + Delta-G solvation = -3223.099030 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.55458 -38.24884 -37.57905 -37.01157 -36.16277 -34.60746 -33.23542 -29.71781 -27.81047 -27.21098 -26.01939 -23.61261 -22.42782 -21.50977 -20.01861 -19.72319 -18.75973 -17.95756 -17.63150 -16.98273 -16.55201 -15.75074 -15.39348 -15.35217 -15.21291 -14.85372 -14.48826 -14.23700 -14.20051 -13.89974 -13.67968 -13.39025 -13.29106 -13.22019 -13.06024 -12.81961 -12.67507 -12.45720 -12.14028 -12.01640 -11.82043 -11.76312 -11.61065 -11.28007 -11.14617 -10.95766 -10.42289 -9.86059 -8.76003 -6.53865 -0.82251 1.40126 1.46938 1.54639 1.61812 2.39256 2.81979 2.87156 2.95599 3.27183 3.41424 3.54872 3.89997 3.95919 4.06780 4.12029 4.21820 4.42953 4.52659 4.55277 4.60962 4.69813 4.76252 4.77331 4.80775 4.87508 4.93320 4.96182 5.14155 5.15670 5.20447 5.34456 5.55018 5.70521 5.96049 6.45409 6.80346 7.28847 8.58358 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.036184 B = 0.005318 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.626675 B = 5263.764519 C = 5321.697328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.167 4.167 3 C -0.107 4.107 4 C -0.568 4.568 5 H 0.156 0.844 6 C -0.143 4.143 7 S 2.609 3.391 8 O -0.990 6.990 9 O -0.986 6.986 10 N -1.033 6.033 11 C 0.147 3.853 12 C 0.179 3.821 13 O -0.567 6.567 14 C -0.607 4.607 15 H 0.047 0.953 16 C -0.009 4.009 17 N -0.928 5.928 18 Si 1.054 2.946 19 H -0.260 1.260 20 H -0.234 1.234 21 H -0.282 1.282 22 C 0.092 3.908 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.359 0.641 36 H 0.260 0.740 37 H 0.108 0.892 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.060 2.719 5.216 18.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.204 4.204 3 C -0.146 4.146 4 C -0.682 4.682 5 H 0.173 0.827 6 C -0.201 4.201 7 S 2.710 3.290 8 O -0.981 6.981 9 O -0.977 6.977 10 N -0.871 5.871 11 C 0.022 3.978 12 C 0.137 3.863 13 O -0.377 6.377 14 C -0.645 4.645 15 H 0.065 0.935 16 C -0.209 4.209 17 N -0.563 5.563 18 Si 0.876 3.124 19 H -0.186 1.186 20 H -0.158 1.158 21 H -0.208 1.208 22 C -0.034 4.034 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.137 0.863 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.124 0.876 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.128 0.872 35 H 0.210 0.790 36 H 0.070 0.930 37 H 0.126 0.874 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.526 2.717 3.455 19.040 hybrid contribution 0.425 -0.495 1.771 1.888 sum -18.100 2.222 5.226 18.970 Atomic orbital electron populations 1.21754 0.93430 1.02669 1.02888 1.22079 0.98728 0.96189 1.03439 1.21616 0.88559 0.98364 1.06074 1.30318 1.07046 1.10060 1.20741 0.82657 1.21702 1.02095 0.90754 1.05594 1.05085 0.71692 0.73996 0.78212 1.93492 1.83460 1.69755 1.51362 1.93496 1.83118 1.33036 1.88070 1.59964 1.20277 1.30131 1.76766 1.22847 0.82456 0.94074 0.98442 1.20759 0.92687 0.90852 0.82037 1.86432 1.75534 1.52362 1.23407 1.22468 1.00229 1.38214 1.03631 0.93459 1.27012 0.92253 0.94373 1.07307 1.70905 1.20519 1.46997 1.17869 0.84066 0.78411 0.77587 0.72354 1.18617 1.15817 1.20780 1.24085 0.84573 0.93841 1.00879 0.92005 0.90671 0.92442 0.92902 0.90048 0.86279 0.90654 0.91153 0.87611 0.91196 0.90880 0.87155 0.78995 0.93049 0.87440 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.91 71.98 0.71 -1.63 16 2 C -0.17 -3.37 5.62 30.60 0.17 -3.20 16 3 C -0.11 -1.95 4.68 30.59 0.14 -1.81 16 4 C -0.57 -12.26 3.03 30.59 0.09 -12.17 16 5 H 0.16 2.75 8.14 -2.39 -0.02 2.73 16 6 C -0.14 -2.75 9.07 71.98 0.65 -2.09 16 7 S 2.61 87.32 5.02 -56.49 -0.28 87.03 16 8 O -0.99 -38.65 17.91 -127.65 -2.29 -40.93 16 9 O -0.99 -37.97 15.77 -127.65 -2.01 -39.98 16 10 N -1.03 -37.73 3.69 -533.26 -1.97 -39.70 16 11 C 0.15 5.66 8.30 86.48 0.72 6.38 16 12 C 0.18 8.07 1.06 -10.88 -0.01 8.06 16 13 O -0.57 -26.79 13.42 -148.98 -2.00 -28.79 16 14 C -0.61 -31.22 9.04 25.60 0.23 -30.99 16 15 H 0.05 2.60 8.04 -2.91 -0.02 2.57 16 16 C -0.01 -0.46 5.47 84.66 0.46 0.00 16 17 N -0.93 -53.75 13.70 21.45 0.29 -53.46 16 18 Si 1.05 44.58 24.79 68.60 1.70 46.28 16 19 H -0.26 -10.35 6.95 99.48 0.69 -9.66 16 20 H -0.23 -8.71 4.86 99.48 0.48 -8.23 16 21 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 22 C 0.09 3.55 6.67 86.48 0.58 4.13 16 23 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 26 H 0.05 1.38 5.61 -2.39 -0.01 1.37 16 27 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.07 1.40 8.11 -2.39 -0.02 1.38 16 31 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.44 6.98 -2.39 -0.02 1.42 16 33 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.11 3.67 8.09 -2.39 -0.02 3.65 16 35 H 0.36 15.63 4.23 -74.05 -0.31 15.31 16 36 H 0.26 15.16 8.72 -92.70 -0.81 14.35 16 37 H 0.11 3.69 7.60 -2.39 -0.02 3.67 16 38 H 0.07 2.89 6.54 -2.38 -0.02 2.87 16 Total: -1.00 -69.25 313.24 -2.34 -71.59 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.46 Total: 31.29 kcal Atomic # 6 Polarization: -37.09 SS G_CDS: 3.75 Total: -33.34 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -1.67 Total: -93.16 kcal Atomic # 8 Polarization: -103.41 SS G_CDS: -6.30 Total: -109.70 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.70 Total: 46.28 kcal Atomic # 16 Polarization: 87.32 SS G_CDS: -0.28 Total: 87.03 kcal Total: -69.25 -2.34 -71.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593578956.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.825 kcal (2) G-P(sol) polarization free energy of solvation -69.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds