Wall clock time and date at job start Mon Mar 30 2020 01:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47023 * 2 1 4 4 H 1.09000 * 109.47181 * 304.77804 * 3 2 1 5 5 C 1.50701 * 109.47399 * 184.78113 * 3 2 1 6 6 H 1.07995 * 119.99474 * 240.00378 * 5 3 2 7 7 C 1.37875 * 120.00036 * 59.99715 * 5 3 2 8 8 N 1.31508 * 120.00082 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 119.99986 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47333 * 89.99792 * 9 7 5 11 11 H 1.48501 * 109.47240 * 210.00039 * 9 7 5 12 12 H 1.48508 * 109.47051 * 329.99754 * 9 7 5 13 13 N 1.46904 * 109.47208 * 64.77692 * 3 2 1 14 14 C 1.46898 * 110.99988 * 252.37716 * 13 3 2 15 15 H 1.08996 * 109.65289 * 37.11369 * 14 13 3 16 16 C 1.55099 * 109.64939 * 276.79391 * 14 13 3 17 17 S 1.83848 * 101.18977 * 198.28665 * 16 14 13 18 18 O 1.42102 * 109.61452 * 148.94705 * 17 16 14 19 19 O 1.42101 * 109.61428 * 282.72663 * 17 16 14 20 20 C 1.82968 * 95.27910 * 35.96588 * 17 16 14 21 21 C 1.52973 * 109.65288 * 157.56297 * 14 13 3 22 22 H 1.09001 * 108.93190 * 270.36878 * 21 14 13 23 23 O 1.42898 * 108.93048 * 29.02926 * 21 14 13 24 24 C 1.42902 * 113.99931 * 212.02014 * 23 21 14 25 25 H 1.08997 * 109.47324 * 302.91716 * 1 2 3 26 26 H 1.09001 * 109.47436 * 62.92158 * 1 2 3 27 27 H 1.09000 * 109.46837 * 182.91973 * 1 2 3 28 28 H 1.09001 * 109.46924 * 240.00078 * 2 1 3 29 29 H 1.08998 * 109.47248 * 119.99728 * 2 1 3 30 30 H 0.97003 * 120.00166 * 179.97438 * 8 7 5 31 31 H 1.00901 * 110.99867 * 16.32871 * 13 3 2 32 32 H 1.08991 * 111.08015 * 316.26468 * 16 14 13 33 33 H 1.09000 * 111.07817 * 80.31209 * 16 14 13 34 34 H 1.08996 * 110.18371 * 220.61938 * 20 17 16 35 35 H 1.08994 * 110.22901 * 98.64105 * 20 17 16 36 36 H 1.08997 * 109.47247 * 60.00046 * 24 23 21 37 37 H 1.08999 * 109.46860 * 299.99979 * 24 23 21 38 38 H 1.09006 * 109.47325 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6084 1.9804 -0.8441 5 6 3.5423 1.4442 -0.1184 6 1 4.1447 1.8898 0.6594 7 6 4.1477 0.8769 -1.2196 8 7 3.4141 0.3347 -2.1669 9 14 6.0099 0.8785 -1.3660 10 1 6.5566 -0.3527 -0.7411 11 1 6.3936 0.9180 -2.8001 12 1 6.5599 2.0714 -0.6734 13 7 1.6467 2.1009 1.2530 14 6 0.5771 3.0804 1.0198 15 1 -0.1084 2.7011 0.2620 16 6 1.1926 4.4203 0.5388 17 16 -0.1907 5.5863 0.8662 18 8 0.3317 6.8693 1.1829 19 8 -1.1792 5.4496 -0.1455 20 6 -0.7511 4.7568 2.3977 21 6 -0.1840 3.3311 2.3228 22 1 -1.0063 2.6192 2.3947 23 8 0.7029 3.1265 3.4244 24 6 0.0641 2.6218 4.5989 25 1 -0.3634 0.5584 0.8626 26 1 -0.3634 0.4678 -0.9150 27 1 -0.3633 -1.0263 0.0523 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8400 -0.0641 -2.9418 31 1 1.3707 1.4224 1.9468 32 1 2.0724 4.6810 1.1270 33 1 1.4307 4.3832 -0.5242 34 1 -1.8401 4.7286 2.4332 35 1 -0.3573 5.2744 3.2723 36 1 -0.3991 1.6607 4.3761 37 1 -0.7002 3.3259 4.9278 38 1 0.8043 2.4944 5.3889 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595531365.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:31 Heat of formation + Delta-G solvation = -105.250165 kcal Electronic energy + Delta-G solvation = -21065.183085 eV Core-core repulsion = 17842.611610 eV Total energy + Delta-G solvation = -3222.571474 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.04572 -36.94796 -36.43168 -35.89992 -33.90004 -31.90781 -30.47599 -28.57878 -27.05168 -26.43326 -24.16203 -22.64846 -20.46472 -19.85560 -18.77601 -17.17206 -16.91567 -16.22153 -15.91832 -15.64182 -15.08471 -14.91365 -14.67486 -14.28438 -13.66292 -13.48279 -13.11390 -12.99044 -12.82362 -12.24563 -12.07584 -11.93101 -11.88381 -11.72573 -11.32699 -11.25360 -11.07673 -10.93010 -10.74998 -10.57177 -10.20121 -10.06073 -9.84937 -9.77842 -9.69937 -9.13243 -8.35607 -7.34085 -5.99877 -4.02686 0.17290 2.58706 3.32216 3.39184 3.43717 3.56925 3.69744 4.12648 4.32427 4.46985 4.66854 4.73886 4.85683 5.15544 5.26903 5.29551 5.34060 5.39801 5.46960 5.65683 5.69085 5.87826 5.99909 6.03515 6.28148 6.31044 6.68565 6.86204 7.04997 7.08397 7.29101 7.69780 7.87871 8.21682 8.45584 8.54930 9.05828 9.62432 11.06185 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018379 B = 0.006107 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.075755 B = 4583.811129 C = 5048.304438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.148 4.148 3 C 0.214 3.786 4 H 0.030 0.970 5 C -0.489 4.489 6 H 0.065 0.935 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.896 3.104 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.648 5.648 14 C 0.088 3.912 15 H 0.072 0.928 16 C -0.544 4.544 17 S 2.377 3.623 18 O -0.944 6.944 19 O -0.939 6.939 20 C -0.620 4.620 21 C 0.098 3.902 22 H 0.078 0.922 23 O -0.350 6.350 24 C 0.024 3.976 25 H 0.030 0.970 26 H 0.046 0.954 27 H 0.037 0.963 28 H 0.103 0.897 29 H 0.038 0.962 30 H 0.259 0.741 31 H 0.333 0.667 32 H 0.150 0.850 33 H 0.139 0.861 34 H 0.133 0.867 35 H 0.146 0.854 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.478 4.167 9.913 14.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.187 4.187 3 C 0.106 3.894 4 H 0.048 0.952 5 C -0.528 4.528 6 H 0.083 0.917 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.281 5.281 14 C -0.024 4.024 15 H 0.090 0.910 16 C -0.677 4.677 17 S 2.561 3.439 18 O -0.940 6.940 19 O -0.936 6.936 20 C -0.749 4.749 21 C 0.038 3.962 22 H 0.096 0.904 23 O -0.268 6.268 24 C -0.073 4.073 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.121 0.879 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.152 0.848 32 H 0.168 0.832 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.164 0.836 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.112 5.414 9.228 14.053 hybrid contribution 0.113 -1.455 0.254 1.482 sum -8.999 3.958 9.482 13.659 Atomic orbital electron populations 1.21928 0.99635 0.99620 0.99763 1.22222 0.91335 1.01829 1.03328 1.19362 0.95806 0.88875 0.85330 0.95245 1.21211 0.90926 1.35743 1.04875 0.91670 1.24963 0.98195 0.95680 0.95857 1.69856 1.34811 1.39410 1.09741 0.86527 0.85719 0.78371 0.76938 1.20908 1.21491 1.19885 1.60734 1.34853 1.19508 1.12978 1.22062 0.93427 0.94428 0.92528 0.91017 1.30631 1.15837 1.09645 1.11558 1.09303 0.79183 0.77471 0.77931 1.93588 1.79388 1.36749 1.84320 1.93616 1.58052 1.87611 1.54324 1.30933 1.11056 1.09719 1.23194 1.22335 0.92555 0.92440 0.88912 0.90420 1.88159 1.33367 1.85011 1.20222 1.22874 0.98524 0.97422 0.88439 0.95109 0.93483 0.94371 0.87919 0.94355 0.93064 0.84761 0.83233 0.84255 0.84819 0.83568 0.93952 0.94403 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.15 37.16 0.34 -2.37 16 2 C -0.15 -3.23 5.06 -26.73 -0.14 -3.36 16 3 C 0.21 4.90 1.98 -68.86 -0.14 4.77 16 4 H 0.03 0.74 7.40 -51.93 -0.38 0.36 16 5 C -0.49 -12.85 8.84 -34.44 -0.30 -13.16 16 6 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 7 C 0.05 1.43 5.29 -17.82 -0.09 1.33 16 8 N -0.90 -24.73 11.29 55.43 0.63 -24.10 16 9 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.65 -12.33 5.33 -99.81 -0.53 -12.86 16 14 C 0.09 1.39 1.87 -66.62 -0.12 1.26 16 15 H 0.07 1.13 6.84 -51.93 -0.36 0.77 16 16 C -0.54 -8.22 6.91 38.27 0.26 -7.96 16 17 S 2.38 31.56 6.04 -107.50 -0.65 30.91 16 18 O -0.94 -15.24 18.16 -57.69 -1.05 -16.29 16 19 O -0.94 -15.12 18.16 -57.69 -1.05 -16.17 16 20 C -0.62 -6.38 7.03 37.48 0.26 -6.12 16 21 C 0.10 1.21 2.83 -26.42 -0.07 1.13 16 22 H 0.08 0.81 7.74 -51.93 -0.40 0.41 16 23 O -0.35 -4.65 8.89 -35.23 -0.31 -4.96 16 24 C 0.02 0.24 10.79 101.05 1.09 1.33 16 25 H 0.03 0.47 6.52 -51.93 -0.34 0.14 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.10 2.58 5.96 -51.93 -0.31 2.27 16 29 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.33 5.98 6.76 -39.29 -0.27 5.72 16 32 H 0.15 2.28 8.14 -51.93 -0.42 1.86 16 33 H 0.14 2.18 8.14 -51.93 -0.42 1.75 16 34 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.15 1.35 7.92 -51.93 -0.41 0.94 16 36 H 0.04 0.38 8.07 -51.93 -0.42 -0.04 16 37 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 316.88 15.07 4.78 4.78 Total: -1.00 -32.57 316.88 -7.93 -40.50 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.81 Total: 5.28 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: 1.09 Total: -23.15 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.09 Total: -36.97 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -2.41 Total: -37.42 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 31.56 SS G_CDS: -0.65 Total: 30.91 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.57 -7.93 -40.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595531365.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.754 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds