Wall clock time and date at job start Mon Mar 30 2020 02:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47062 * 2 1 4 4 O 1.42896 * 109.46778 * 120.00124 * 2 1 3 5 5 C 1.42901 * 114.00465 * 90.00068 * 4 2 1 6 6 C 1.53035 * 109.46290 * 210.00007 * 5 4 2 7 7 C 1.53193 * 109.31084 * 178.61429 * 6 5 4 8 8 N 1.46920 * 108.77919 * 54.63404 * 7 6 5 9 9 S 1.65604 * 120.63517 * 126.36468 * 8 7 6 10 10 O 1.42099 * 106.39818 * 336.46233 * 9 8 7 11 11 O 1.42097 * 106.40313 * 203.53967 * 9 8 7 12 12 C 1.76203 * 107.21290 * 89.99974 * 9 8 7 13 13 H 1.07991 * 120.00454 * 359.72757 * 12 9 8 14 14 C 1.37885 * 119.99682 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99913 * 359.72372 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.72804 * 14 12 9 17 17 H 1.48493 * 109.47326 * 90.00142 * 16 14 12 18 18 H 1.48506 * 109.46545 * 209.99892 * 16 14 12 19 19 H 1.48498 * 109.47210 * 329.99603 * 16 14 12 20 20 C 1.46926 * 118.73758 * 306.64426 * 8 7 6 21 21 C 1.52765 * 109.00911 * 53.30691 * 20 8 7 22 22 H 1.08999 * 109.47002 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47030 * 299.99839 * 1 2 3 24 24 H 1.08997 * 109.47047 * 60.00037 * 1 2 3 25 25 H 1.09000 * 109.47030 * 240.00161 * 2 1 3 26 26 H 1.08999 * 109.46851 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47159 * 299.99894 * 3 2 1 28 28 H 1.09003 * 109.47318 * 59.99725 * 3 2 1 29 29 H 1.09000 * 109.45439 * 329.97020 * 5 4 2 30 30 H 1.08994 * 109.49909 * 58.65792 * 6 5 4 31 31 H 1.09005 * 109.49502 * 298.55796 * 6 5 4 32 32 H 1.08994 * 109.58618 * 294.84205 * 7 6 5 33 33 H 1.09005 * 109.70242 * 174.49092 * 7 6 5 34 34 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 35 35 H 1.08999 * 109.58945 * 173.14353 * 20 8 7 36 36 H 1.09006 * 109.58750 * 293.56667 * 20 8 7 37 37 H 1.09000 * 109.56143 * 185.55681 * 21 20 8 38 38 H 1.08993 * 109.35763 * 65.50146 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 -2.0782 0.9887 6 6 1.9694 -2.7976 2.3196 7 6 2.1440 -4.3060 2.1171 8 7 3.4626 -4.5533 1.5181 9 16 4.5234 -5.6131 2.2210 10 8 4.1612 -5.6928 3.5927 11 8 5.8201 -5.2345 1.7802 12 6 4.2073 -7.2027 1.5297 13 1 3.4283 -7.3256 0.7919 14 6 4.9504 -8.2910 1.9353 15 7 5.8988 -8.1415 2.8342 16 14 4.6102 -9.9777 1.2081 17 1 5.4463 -10.1721 -0.0037 18 1 4.9391 -11.0239 2.2094 19 1 3.1749 -10.0779 0.8406 20 6 3.8247 -3.8377 0.2870 21 6 3.6291 -2.3387 0.5069 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.4935 -2.4510 0.2472 30 1 0.9592 -2.5925 2.6737 31 1 2.6921 -2.4432 3.0547 32 1 1.3649 -4.6779 1.4518 33 1 2.0779 -4.8159 3.0783 34 1 6.4218 -8.9071 3.1193 35 1 4.8680 -4.0366 0.0421 36 1 3.1854 -4.1707 -0.5307 37 1 3.8001 -1.8071 -0.4292 38 1 4.3361 -1.9886 1.2590 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695070723.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:29 Heat of formation + Delta-G solvation = -178.427658 kcal Electronic energy + Delta-G solvation = -20664.143721 eV Core-core repulsion = 17438.399032 eV Total energy + Delta-G solvation = -3225.744689 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.26536 -38.05279 -37.48444 -36.14579 -35.18303 -33.91396 -32.06901 -31.52557 -28.25547 -28.05164 -24.92930 -24.35036 -22.01806 -21.48488 -20.74746 -19.11937 -18.45898 -17.74508 -17.02922 -16.67124 -16.03254 -15.95245 -15.73023 -15.28707 -15.16601 -14.74908 -14.34403 -14.05976 -13.93043 -13.47969 -13.34130 -13.06463 -13.02065 -12.98736 -12.94226 -12.62226 -12.53064 -12.45222 -12.30118 -12.16518 -12.10915 -11.72209 -11.53593 -11.33383 -11.25469 -10.95955 -10.35684 -9.83053 -8.74771 -7.49552 0.29081 1.33935 1.34632 1.50970 2.20506 2.57239 2.66694 2.84365 3.76138 3.79548 3.82596 4.03414 4.09789 4.16574 4.23038 4.36086 4.37771 4.39173 4.46734 4.51285 4.72638 4.80206 4.80560 4.83757 4.96315 4.96735 5.03043 5.03866 5.14977 5.22117 5.29499 5.34365 5.38293 5.41588 5.90068 5.97850 6.43669 6.77314 8.20446 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.039375 B = 0.004482 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.931709 B = 6246.062347 C = 6353.057474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.068 3.932 3 C -0.148 4.148 4 O -0.395 6.395 5 C 0.100 3.900 6 C -0.125 4.125 7 C 0.119 3.881 8 N -1.010 6.010 9 S 2.716 3.284 10 O -1.041 7.041 11 O -1.042 7.042 12 C -1.041 5.041 13 H 0.121 0.879 14 C 0.068 3.932 15 N -0.896 5.896 16 Si 0.992 3.008 17 H -0.254 1.254 18 H -0.263 1.263 19 H -0.246 1.246 20 C 0.118 3.882 21 C -0.149 4.149 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.299 0.701 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.929 12.147 -9.437 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.011 3.989 3 C -0.205 4.205 4 O -0.315 6.315 5 C 0.042 3.958 6 C -0.164 4.164 7 C -0.006 4.006 8 N -0.849 5.849 9 S 2.818 3.182 10 O -1.032 7.032 11 O -1.032 7.032 12 C -1.174 5.174 13 H 0.139 0.861 14 C -0.145 4.145 15 N -0.527 5.527 16 Si 0.810 3.190 17 H -0.178 1.178 18 H -0.188 1.188 19 H -0.169 1.169 20 C -0.007 4.007 21 C -0.189 4.189 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.100 0.900 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.107 0.893 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.105 12.458 -8.484 18.722 hybrid contribution 0.110 -1.257 -0.343 1.308 sum -10.994 11.201 -8.827 18.007 Atomic orbital electron populations 1.22285 0.95067 1.02514 1.02969 1.22363 0.94408 0.94127 0.88011 1.21873 1.01391 0.94189 1.03056 1.87957 1.86516 1.20156 1.36853 1.21973 0.95325 0.81195 0.97267 1.21930 1.03382 0.93842 0.97264 1.21487 0.83943 0.96014 0.99179 1.57718 1.29589 1.59137 1.38485 1.00059 0.71308 0.74442 0.72350 1.93284 1.84194 1.88637 1.37044 1.93281 1.41368 1.85299 1.83253 1.31000 1.30821 1.16276 1.39317 0.86088 1.26075 0.90666 1.06067 0.91655 1.70002 1.19074 1.36159 1.27511 0.85106 0.80639 0.74293 0.78986 1.17767 1.18750 1.16909 1.21379 1.01639 0.91495 0.86187 1.22318 0.98219 0.95630 1.02687 0.92500 0.92467 0.90035 0.91265 0.92780 0.89301 0.92473 0.89741 0.88132 0.93124 0.88811 0.90342 0.89114 0.90650 0.88933 0.88423 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 9.52 71.98 0.69 -1.83 16 2 C 0.07 1.22 3.13 30.59 0.10 1.31 16 3 C -0.15 -2.30 9.56 71.98 0.69 -1.62 16 4 O -0.39 -9.81 9.63 -148.98 -1.43 -11.25 16 5 C 0.10 2.51 2.36 30.62 0.07 2.59 16 6 C -0.12 -3.57 5.73 30.67 0.18 -3.40 16 7 C 0.12 3.95 6.48 86.36 0.56 4.51 16 8 N -1.01 -40.94 3.30 -513.85 -1.69 -42.63 16 9 S 2.72 149.24 5.01 -56.49 -0.28 148.96 16 10 O -1.04 -63.31 16.61 -128.00 -2.13 -65.44 16 11 O -1.04 -63.39 16.60 -128.00 -2.12 -65.51 16 12 C -1.04 -57.70 9.75 67.74 0.66 -57.04 16 13 H 0.12 5.99 7.81 -2.92 -0.02 5.97 16 14 C 0.07 3.81 5.46 84.66 0.46 4.27 16 15 N -0.90 -54.16 13.19 21.45 0.28 -53.88 16 16 Si 0.99 41.21 29.54 68.60 2.03 43.24 16 17 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 18 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 19 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 20 C 0.12 3.92 6.45 86.22 0.56 4.47 16 21 C -0.15 -4.20 5.67 30.53 0.17 -4.02 16 22 H 0.06 0.84 7.96 -2.39 -0.02 0.82 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.07 1.10 7.61 -2.39 -0.02 1.09 16 26 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 1.73 7.62 -2.39 -0.02 1.71 16 30 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.08 2.92 6.92 -2.38 -0.02 2.90 16 34 H 0.30 16.19 8.31 -92.71 -0.77 15.42 16 35 H 0.08 2.81 6.91 -2.39 -0.02 2.80 16 36 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 37 H 0.10 2.16 7.95 -2.39 -0.02 2.14 16 38 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -76.84 321.82 -0.20 -77.04 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 1.03 Total: 20.22 kcal Atomic # 6 Polarization: -54.88 SS G_CDS: 4.13 Total: -50.75 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -1.41 Total: -96.51 kcal Atomic # 8 Polarization: -136.51 SS G_CDS: -5.69 Total: -142.20 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Atomic # 16 Polarization: 149.24 SS G_CDS: -0.28 Total: 148.96 kcal Total: -76.84 -0.20 -77.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695070723.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.387 kcal (2) G-P(sol) polarization free energy of solvation -76.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds