Wall clock time and date at job start Mon Mar 30 2020 01:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47324 * 2 1 4 4 H 1.09000 * 109.47090 * 305.97569 * 3 2 1 5 5 C 1.50697 * 109.47284 * 185.97946 * 3 2 1 6 6 H 1.08006 * 119.99795 * 244.42814 * 5 3 2 7 7 C 1.37879 * 120.00133 * 64.42171 * 5 3 2 8 8 N 1.31515 * 119.99615 * 192.38741 * 7 5 3 9 9 Si 1.86795 * 119.99845 * 12.39230 * 7 5 3 10 10 H 1.48509 * 109.47072 * 95.25957 * 9 7 5 11 11 H 1.48497 * 109.47471 * 335.25972 * 9 7 5 12 12 H 1.48498 * 109.46966 * 215.25291 * 9 7 5 13 13 N 1.46895 * 109.47491 * 65.97443 * 3 2 1 14 14 C 1.46898 * 111.00459 * 207.40250 * 13 3 2 15 15 H 1.08999 * 108.88860 * 324.26434 * 14 13 3 16 16 C 1.54205 * 108.93080 * 82.93448 * 14 13 3 17 17 S 1.83819 * 102.86085 * 145.78764 * 16 14 13 18 18 O 1.42109 * 109.80896 * 77.69039 * 17 16 14 19 19 O 1.42097 * 109.81371 * 212.03475 * 17 16 14 20 20 C 1.83816 * 94.23890 * 324.86466 * 17 16 14 21 21 C 1.52385 * 108.92515 * 205.72931 * 14 13 3 22 22 H 1.09008 * 108.92401 * 118.50935 * 21 14 13 23 23 O 1.42895 * 108.92725 * 359.97438 * 21 14 13 24 24 C 1.42898 * 114.00137 * 150.00164 * 23 21 14 25 25 H 1.09001 * 109.47327 * 179.22177 * 1 2 3 26 26 H 1.09001 * 109.47305 * 299.22732 * 1 2 3 27 27 H 1.09007 * 109.46944 * 59.22652 * 1 2 3 28 28 H 1.09001 * 109.47295 * 239.99552 * 2 1 3 29 29 H 1.09007 * 109.47040 * 119.99629 * 2 1 3 30 30 H 0.96998 * 119.99749 * 180.02562 * 8 7 5 31 31 H 1.00907 * 111.00321 * 331.35458 * 13 3 2 32 32 H 1.08992 * 110.73711 * 264.13364 * 16 14 13 33 33 H 1.09008 * 110.72954 * 27.44891 * 16 14 13 34 34 H 1.09008 * 110.73726 * 153.48381 * 20 17 16 35 35 H 1.09006 * 110.73537 * 276.61362 * 20 17 16 36 36 H 1.09002 * 109.47229 * 179.97438 * 24 23 21 37 37 H 1.09001 * 109.47336 * 299.99816 * 24 23 21 38 38 H 1.09002 * 109.47328 * 59.99627 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5920 1.9863 -0.8316 5 6 3.5397 1.4450 -0.1480 6 1 4.1607 1.8202 0.6521 7 6 4.1192 0.9684 -1.3048 8 7 5.4139 0.7414 -1.3464 9 14 3.0652 0.6452 -2.8127 10 1 3.1055 1.8295 -3.7079 11 1 1.6640 0.3903 -2.3920 12 1 3.5881 -0.5409 -3.5372 13 7 1.6717 2.0922 1.2649 14 6 1.5346 3.5443 1.0906 15 1 2.2796 3.8853 0.3718 16 6 0.1284 3.8512 0.5372 17 16 -0.2801 5.4599 1.3274 18 8 0.4004 6.5122 0.6573 19 8 -1.6804 5.5432 1.5543 20 6 0.5834 5.0617 2.9005 21 6 1.7920 4.2290 2.4274 22 1 2.6564 4.8856 2.3277 23 8 2.0813 3.2329 3.4103 24 6 2.9576 3.6774 4.4479 25 1 -0.3634 -1.0276 -0.0140 26 1 -0.3634 0.5018 0.8968 27 1 -0.3633 0.5258 -0.8830 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8216 0.4065 -2.1603 31 1 0.8265 1.6922 1.6442 32 1 0.1537 3.9497 -0.5479 33 1 -0.5817 3.0814 0.8395 34 1 0.9140 5.9722 3.4005 35 1 -0.0600 4.4750 3.5562 36 1 3.1272 2.8641 5.1535 37 1 3.9084 3.9860 4.0132 38 1 2.5053 4.5214 4.9687 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697276284.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:33 Heat of formation + Delta-G solvation = -93.441089 kcal Electronic energy + Delta-G solvation = -21132.975102 eV Core-core repulsion = 17910.915708 eV Total energy + Delta-G solvation = -3222.059395 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.86509 -37.08565 -36.62488 -36.04904 -34.02921 -32.04543 -30.70518 -28.72427 -27.07290 -26.41930 -24.44226 -22.56255 -20.38680 -19.89417 -18.96681 -17.01407 -16.85166 -16.70220 -16.12816 -15.71992 -15.26023 -14.90556 -14.68761 -14.14304 -13.93132 -13.52285 -13.29906 -12.95436 -12.82057 -12.52763 -12.21613 -12.10318 -12.06160 -11.84233 -11.78590 -11.45713 -11.03555 -10.86519 -10.74295 -10.61683 -10.35629 -10.27347 -10.03438 -9.50195 -9.40284 -9.21123 -8.52825 -7.42986 -6.08944 -4.03090 0.00052 2.40272 3.23484 3.33011 3.35894 3.54113 3.78191 3.95353 4.34540 4.39312 4.62590 4.69901 4.95365 4.99113 5.17281 5.27760 5.39960 5.51169 5.55526 5.66317 5.75701 5.81725 5.86244 5.88900 5.99967 6.12541 6.46211 6.58926 6.67581 6.86029 7.14100 7.34015 7.72759 7.86499 8.17724 8.70797 9.07615 9.56617 11.04335 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018568 B = 0.006641 C = 0.006012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.569583 B = 4215.386758 C = 4656.175309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.131 4.131 3 C 0.190 3.810 4 H 0.000 1.000 5 C -0.501 4.501 6 H 0.081 0.919 7 C 0.071 3.929 8 N -0.895 5.895 9 Si 0.856 3.144 10 H -0.283 1.283 11 H -0.251 1.251 12 H -0.288 1.288 13 N -0.636 5.636 14 C 0.095 3.905 15 H 0.116 0.884 16 C -0.605 4.605 17 S 2.378 3.622 18 O -0.931 6.931 19 O -0.943 6.943 20 C -0.611 4.611 21 C 0.107 3.893 22 H 0.083 0.917 23 O -0.334 6.334 24 C 0.027 3.973 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.262 0.738 31 H 0.328 0.672 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.145 0.855 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.007 6.192 8.034 14.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.169 4.169 3 C 0.081 3.919 4 H 0.018 0.982 5 C -0.539 4.539 6 H 0.099 0.901 7 C -0.131 4.131 8 N -0.533 5.533 9 Si 0.683 3.317 10 H -0.209 1.209 11 H -0.175 1.175 12 H -0.214 1.214 13 N -0.267 5.267 14 C -0.018 4.018 15 H 0.134 0.866 16 C -0.738 4.738 17 S 2.562 3.438 18 O -0.928 6.928 19 O -0.940 6.940 20 C -0.741 4.741 21 C 0.046 3.954 22 H 0.101 0.899 23 O -0.251 6.251 24 C -0.070 4.070 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.147 0.853 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.163 0.837 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.788 6.776 7.828 14.248 hybrid contribution -0.692 -0.605 -1.085 1.422 sum -10.480 6.171 6.744 13.906 Atomic orbital electron populations 1.21948 0.98638 1.00536 1.00403 1.22158 0.92437 1.00094 1.02237 1.19647 0.96873 0.89681 0.85659 0.98250 1.21008 0.89120 1.41291 1.02493 0.90088 1.24929 0.94692 0.94969 0.98506 1.69945 1.10570 1.45031 1.27743 0.87349 0.82352 0.78001 0.83983 1.20928 1.17507 1.21374 1.60320 1.38356 0.98630 1.29404 1.21876 0.92201 0.93979 0.93768 0.86556 1.31250 1.08148 1.21198 1.13182 1.09331 0.75851 0.78834 0.79832 1.93638 1.75901 1.51526 1.71750 1.93593 1.28667 1.86946 1.84814 1.31066 1.12212 1.10207 1.20631 1.22238 0.94531 0.89473 0.89198 0.89930 1.88151 1.66076 1.35492 1.35365 1.22809 0.93339 0.99917 0.90919 0.93666 0.93441 0.93705 0.91973 0.91672 0.92789 0.85265 0.84301 0.84571 0.84928 0.83707 0.89691 0.93773 0.94971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.75 37.16 0.36 -2.16 16 2 C -0.13 -2.63 4.69 -26.73 -0.13 -2.75 16 3 C 0.19 4.06 1.34 -68.87 -0.09 3.97 16 4 H 0.00 0.00 6.28 -51.93 -0.33 -0.33 16 5 C -0.50 -13.29 9.06 -34.44 -0.31 -13.61 16 6 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 7 C 0.07 1.95 5.36 -17.82 -0.10 1.86 16 8 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 9 Si 0.86 20.31 25.71 -169.99 -4.37 15.94 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.25 -5.48 5.32 56.52 0.30 -5.18 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 N -0.64 -11.54 4.82 -100.63 -0.48 -12.02 16 14 C 0.10 1.47 2.77 -67.40 -0.19 1.28 16 15 H 0.12 2.00 7.69 -51.93 -0.40 1.60 16 16 C -0.61 -7.50 6.58 37.79 0.25 -7.25 16 17 S 2.38 28.16 6.08 -107.50 -0.65 27.51 16 18 O -0.93 -13.99 18.17 -57.66 -1.05 -15.04 16 19 O -0.94 -13.65 18.16 -57.66 -1.05 -14.70 16 20 C -0.61 -6.13 6.95 37.79 0.26 -5.87 16 21 C 0.11 1.41 3.09 -26.42 -0.08 1.33 16 22 H 0.08 1.03 7.76 -51.92 -0.40 0.63 16 23 O -0.33 -4.90 9.05 -35.23 -0.32 -5.22 16 24 C 0.03 0.32 10.78 101.05 1.09 1.41 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.66 6.51 -51.93 -0.34 0.32 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 1.34 4.70 -51.93 -0.24 1.10 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.33 5.28 5.96 -39.29 -0.23 5.05 16 32 H 0.14 1.64 8.14 -51.93 -0.42 1.22 16 33 H 0.14 1.48 7.60 -51.92 -0.39 1.08 16 34 H 0.13 1.04 8.14 -51.92 -0.42 0.62 16 35 H 0.14 1.28 8.08 -51.93 -0.42 0.86 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.04 0.53 8.07 -51.93 -0.42 0.11 16 38 H 0.03 0.31 8.10 -51.93 -0.42 -0.12 16 LS Contribution 311.82 15.07 4.70 4.70 Total: -1.00 -34.27 311.82 -7.17 -41.44 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.79 Total: 5.02 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 1.07 Total: -21.79 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.29 Total: -37.86 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -2.41 Total: -34.95 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.37 Total: 15.94 kcal Atomic # 16 Polarization: 28.16 SS G_CDS: -0.65 Total: 27.51 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.27 -7.17 -41.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697276284.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.999 kcal (2) G-P(sol) polarization free energy of solvation -34.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds