Wall clock time and date at job start Mon Mar 30 2020 01:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47136 * 2 1 4 4 H 1.08999 * 109.47396 * 305.00464 * 3 2 1 5 5 O 1.45202 * 109.46822 * 65.00374 * 3 2 1 6 6 C 1.34801 * 117.00355 * 269.99762 * 5 3 2 7 7 O 1.21531 * 119.99914 * 0.02562 * 6 5 3 8 8 C 1.47289 * 120.00174 * 180.02562 * 6 5 3 9 9 C 1.39283 * 120.28660 * 356.62807 * 8 6 5 10 10 C 1.38203 * 120.08561 * 179.97438 * 9 8 6 11 11 C 1.38841 * 120.68013 * 0.02688 * 10 9 8 12 12 C 1.37595 * 120.58488 * 359.97044 * 11 10 9 13 13 C 1.40704 * 119.88377 * 359.75164 * 12 11 10 14 14 C 1.40868 * 120.33099 * 180.25304 * 13 12 11 15 15 H 1.07995 * 120.00265 * 141.97938 * 14 13 12 16 16 C 1.40295 * 119.99407 * 321.97914 * 14 13 12 17 17 N 1.30620 * 119.99293 * 173.08443 * 16 14 13 18 18 Si 1.86790 * 120.00612 * 353.07892 * 16 14 13 19 19 H 1.48503 * 109.47047 * 89.61638 * 18 16 14 20 20 H 1.48500 * 109.47683 * 209.61831 * 18 16 14 21 21 H 1.48503 * 109.47206 * 329.62023 * 18 16 14 22 22 C 1.50698 * 109.47162 * 185.00377 * 3 2 1 23 23 N 1.34772 * 120.00163 * 65.00195 * 22 3 2 24 24 O 1.21285 * 119.99894 * 245.00329 * 22 3 2 25 25 H 1.09001 * 109.47364 * 59.99074 * 1 2 3 26 26 H 1.09005 * 109.46437 * 299.99408 * 1 2 3 27 27 H 1.09000 * 109.47452 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47294 * 120.00836 * 2 1 3 29 29 H 1.09005 * 109.46437 * 240.00592 * 2 1 3 30 30 H 1.08003 * 119.96117 * 0.02562 * 9 8 6 31 31 H 1.07997 * 119.66015 * 179.97438 * 10 9 8 32 32 H 1.08007 * 119.70454 * 179.97438 * 11 10 9 33 33 H 1.08002 * 120.05440 * 180.02562 * 12 11 10 34 34 H 0.97011 * 119.99552 * 179.97438 * 17 16 14 35 35 H 0.97003 * 119.99659 * 0.02562 * 23 22 3 36 36 H 0.96996 * 120.00219 * 180.02562 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 8 1.6560 2.0916 1.2408 6 6 0.4678 2.7281 1.2563 7 8 -0.2283 2.7398 0.2601 8 6 0.0131 3.4093 2.4804 9 6 0.7727 3.3407 3.6459 10 6 0.3425 3.9820 4.7920 11 6 -0.8463 4.6992 4.7987 12 6 -1.6184 4.7853 3.6630 13 6 -1.2004 4.1467 2.4810 14 6 -1.9808 4.2331 1.3115 15 1 -1.5016 4.3276 0.3483 16 6 -3.3806 4.1965 1.3981 17 7 -4.1065 4.4116 0.3337 18 14 -4.2062 3.8400 3.0353 19 1 -4.4345 5.1145 3.7624 20 1 -5.5078 3.1660 2.7971 21 1 -3.3326 2.9561 3.8482 22 6 3.5419 1.4443 -0.1239 23 7 4.1260 0.9828 -1.2475 24 8 4.2251 1.8610 0.7875 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 0.8898 29 1 1.8933 -0.5138 -0.8901 30 1 1.6996 2.7863 3.6538 31 1 0.9366 3.9239 5.6920 32 1 -1.1678 5.1940 5.7033 33 1 -2.5414 5.3459 3.6777 34 1 -5.0745 4.3859 0.3935 35 1 3.5795 0.6499 -1.9765 36 1 5.0926 0.9837 -1.3271 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726994284.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:13 Heat of formation + Delta-G solvation = -109.580345 kcal Electronic energy + Delta-G solvation = -21734.656299 eV Core-core repulsion = 18376.453102 eV Total energy + Delta-G solvation = -3358.203197 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.19968 -38.92587 -37.50920 -35.46981 -34.12279 -33.68233 -32.81783 -30.56726 -30.20147 -27.58310 -25.48757 -22.91250 -22.15628 -21.49831 -20.29581 -19.66671 -17.83454 -17.52031 -17.32324 -16.29882 -15.83372 -15.65079 -15.16753 -14.42187 -14.14483 -14.07891 -13.91266 -13.62186 -13.16127 -12.74578 -12.51526 -12.13263 -11.94272 -11.87754 -11.62075 -11.51610 -10.98799 -10.81597 -10.69532 -10.51082 -10.28748 -10.08068 -9.85484 -9.78385 -9.61242 -9.33310 -8.90529 -7.88561 -7.67703 -6.99172 -4.59264 1.94345 2.58258 2.59213 2.92874 3.04586 3.12185 3.24115 3.69339 3.87912 3.90305 4.49655 4.74274 4.92149 5.11592 5.26680 5.28991 5.62237 5.84663 5.87961 5.96153 6.03683 6.05725 6.25378 6.35857 6.53594 6.64296 6.66871 6.71840 7.03134 7.07937 7.18823 7.28386 7.37722 7.60153 7.69474 7.95947 8.20207 8.35159 8.50417 8.70732 8.95524 9.98535 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.020848 B = 0.006172 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.754598 B = 4535.285611 C = 5378.309949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C 0.071 3.929 4 H 0.108 0.892 5 O -0.340 6.340 6 C 0.502 3.498 7 O -0.497 6.497 8 C -0.236 4.236 9 C -0.020 4.020 10 C -0.253 4.253 11 C -0.059 4.059 12 C -0.227 4.227 13 C 0.120 3.880 14 C -0.398 4.398 15 H 0.116 0.884 16 C 0.080 3.920 17 N -0.792 5.792 18 Si 0.908 3.092 19 H -0.267 1.267 20 H -0.288 1.288 21 H -0.242 1.242 22 C 0.522 3.478 23 N -0.854 5.854 24 O -0.520 6.520 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.288 0.712 35 H 0.402 0.598 36 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.450 -7.278 -1.936 10.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C 0.012 3.988 4 H 0.126 0.874 5 O -0.258 6.258 6 C 0.351 3.649 7 O -0.387 6.387 8 C -0.239 4.239 9 C -0.038 4.038 10 C -0.272 4.272 11 C -0.078 4.078 12 C -0.246 4.246 13 C 0.116 3.884 14 C -0.425 4.425 15 H 0.134 0.866 16 C -0.141 4.141 17 N -0.415 5.415 18 Si 0.734 3.266 19 H -0.192 1.192 20 H -0.216 1.216 21 H -0.165 1.165 22 C 0.306 3.694 23 N -0.420 5.420 24 O -0.394 6.394 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.129 0.871 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.099 0.901 35 H 0.230 0.770 36 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 7.281 -6.939 -1.733 10.206 hybrid contribution -0.363 -0.279 0.036 0.459 sum 6.919 -7.218 -1.697 10.141 Atomic orbital electron populations 1.21838 0.93446 1.01349 1.04171 1.21888 0.98349 0.93632 1.02887 1.22276 0.91154 0.95453 0.89964 0.87433 1.86735 1.38974 1.64899 1.35151 1.21352 0.78006 0.76123 0.89407 1.90811 1.53686 1.58919 1.35245 1.18673 1.02941 1.11001 0.91242 1.21050 0.96505 0.94216 0.92027 1.20405 0.99965 1.08845 0.98013 1.20823 0.94333 0.96118 0.96486 1.21138 1.02151 1.06654 0.94608 1.17514 0.90611 0.87822 0.92480 1.20002 0.90383 1.36149 0.95943 0.86597 1.26323 0.97624 0.91597 0.98531 1.69542 1.07958 1.33029 1.30961 0.86381 0.78074 0.80228 0.81916 1.19242 1.21553 1.16484 1.20391 0.90119 0.76720 0.82193 1.43724 1.11369 1.67997 1.18926 1.90768 1.65155 1.44760 1.38753 0.91416 0.91733 0.92841 0.90715 0.90603 0.87112 0.88125 0.88269 0.87400 0.90117 0.76974 0.76534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.56 37.16 0.32 -2.01 16 2 C -0.13 -1.71 5.62 -26.73 -0.15 -1.86 16 3 C 0.07 1.14 2.67 -27.89 -0.07 1.06 16 4 H 0.11 1.71 7.16 -51.93 -0.37 1.34 16 5 O -0.34 -6.97 8.61 -47.44 -0.41 -7.38 16 6 C 0.50 11.62 6.31 34.41 0.22 11.83 16 7 O -0.50 -12.19 10.82 -19.29 -0.21 -12.39 16 8 C -0.24 -5.70 5.92 -104.39 -0.62 -6.32 16 9 C -0.02 -0.43 9.60 -39.21 -0.38 -0.80 16 10 C -0.25 -5.17 10.03 -39.37 -0.39 -5.56 16 11 C -0.06 -1.23 10.01 -39.59 -0.40 -1.62 16 12 C -0.23 -5.29 6.97 -38.89 -0.27 -5.56 16 13 C 0.12 3.05 5.04 -106.53 -0.54 2.52 16 14 C -0.40 -10.79 8.12 -37.81 -0.31 -11.10 16 15 H 0.12 3.43 6.30 -52.49 -0.33 3.10 16 16 C 0.08 2.07 5.50 -17.29 -0.10 1.97 16 17 N -0.79 -20.79 13.92 55.57 0.77 -20.02 16 18 Si 0.91 20.21 24.49 -169.99 -4.16 16.05 16 19 H -0.27 -5.64 6.69 56.52 0.38 -5.26 16 20 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.24 -5.53 6.73 56.52 0.38 -5.15 16 22 C 0.52 7.72 7.45 -10.99 -0.08 7.64 16 23 N -0.85 -7.72 8.77 31.22 0.27 -7.44 16 24 O -0.52 -10.03 17.35 -14.05 -0.24 -10.28 16 25 H 0.07 1.10 7.79 -51.93 -0.40 0.69 16 26 H 0.06 1.22 6.06 -51.93 -0.31 0.91 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 0.71 7.77 -51.93 -0.40 0.31 16 30 H 0.11 2.25 7.61 -52.48 -0.40 1.85 16 31 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 32 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 33 H 0.11 2.45 4.91 -52.49 -0.26 2.19 16 34 H 0.29 6.80 8.29 -40.82 -0.34 6.46 16 35 H 0.40 2.40 8.53 -40.82 -0.35 2.05 16 36 H 0.40 3.00 8.93 -40.82 -0.36 2.63 16 LS Contribution 302.04 15.07 4.55 4.55 Total: -1.00 -31.63 302.04 -6.26 -37.88 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -4.06 Total: 8.85 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -2.77 Total: -9.82 kcal Atomic # 7 Polarization: -28.51 SS G_CDS: 1.05 Total: -27.46 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.86 Total: -30.05 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.16 Total: 16.05 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.63 -6.26 -37.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726994284.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.698 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds