Wall clock time and date at job start Mon Mar 30 2020 01:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47136 * 2 1 4 4 H 1.08999 * 109.47396 * 305.00464 * 3 2 1 5 5 O 1.45202 * 109.46822 * 65.00374 * 3 2 1 6 6 C 1.34801 * 117.00355 * 269.99762 * 5 3 2 7 7 O 1.21531 * 119.99914 * 0.02562 * 6 5 3 8 8 C 1.47289 * 120.00174 * 180.02562 * 6 5 3 9 9 C 1.39283 * 120.28660 * 356.62807 * 8 6 5 10 10 C 1.38203 * 120.08561 * 179.97438 * 9 8 6 11 11 C 1.38841 * 120.68013 * 0.02688 * 10 9 8 12 12 C 1.37595 * 120.58488 * 359.97044 * 11 10 9 13 13 C 1.40704 * 119.88377 * 359.75164 * 12 11 10 14 14 C 1.40868 * 120.33099 * 180.25304 * 13 12 11 15 15 H 1.07995 * 120.00265 * 141.97938 * 14 13 12 16 16 C 1.40295 * 119.99407 * 321.97914 * 14 13 12 17 17 N 1.30620 * 119.99293 * 173.08443 * 16 14 13 18 18 Si 1.86790 * 120.00612 * 353.07892 * 16 14 13 19 19 H 1.48503 * 109.47047 * 89.61638 * 18 16 14 20 20 H 1.48500 * 109.47683 * 209.61831 * 18 16 14 21 21 H 1.48503 * 109.47206 * 329.62023 * 18 16 14 22 22 C 1.50698 * 109.47162 * 185.00377 * 3 2 1 23 23 N 1.34772 * 120.00163 * 65.00195 * 22 3 2 24 24 O 1.21285 * 119.99894 * 245.00329 * 22 3 2 25 25 H 1.09001 * 109.47364 * 59.99074 * 1 2 3 26 26 H 1.09005 * 109.46437 * 299.99408 * 1 2 3 27 27 H 1.09000 * 109.47452 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47294 * 120.00836 * 2 1 3 29 29 H 1.09005 * 109.46437 * 240.00592 * 2 1 3 30 30 H 1.08003 * 119.96117 * 0.02562 * 9 8 6 31 31 H 1.07997 * 119.66015 * 179.97438 * 10 9 8 32 32 H 1.08007 * 119.70454 * 179.97438 * 11 10 9 33 33 H 1.08002 * 120.05440 * 180.02562 * 12 11 10 34 34 H 0.97011 * 119.99552 * 179.97438 * 17 16 14 35 35 H 0.97003 * 119.99659 * 0.02562 * 23 22 3 36 36 H 0.96996 * 120.00219 * 180.02562 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 8 1.6560 2.0916 1.2408 6 6 0.4678 2.7281 1.2563 7 8 -0.2283 2.7398 0.2601 8 6 0.0131 3.4093 2.4804 9 6 0.7727 3.3407 3.6459 10 6 0.3425 3.9820 4.7920 11 6 -0.8463 4.6992 4.7987 12 6 -1.6184 4.7853 3.6630 13 6 -1.2004 4.1467 2.4810 14 6 -1.9808 4.2331 1.3115 15 1 -1.5016 4.3276 0.3483 16 6 -3.3806 4.1965 1.3981 17 7 -4.1065 4.4116 0.3337 18 14 -4.2062 3.8400 3.0353 19 1 -4.4345 5.1145 3.7624 20 1 -5.5078 3.1660 2.7971 21 1 -3.3326 2.9561 3.8482 22 6 3.5419 1.4443 -0.1239 23 7 4.1260 0.9828 -1.2475 24 8 4.2251 1.8610 0.7875 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 0.8898 29 1 1.8933 -0.5138 -0.8901 30 1 1.6996 2.7863 3.6538 31 1 0.9366 3.9239 5.6920 32 1 -1.1678 5.1940 5.7033 33 1 -2.5414 5.3459 3.6777 34 1 -5.0745 4.3859 0.3935 35 1 3.5795 0.6499 -1.9765 36 1 5.0926 0.9837 -1.3271 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726994284.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:13 Heat of formation + Delta-G solvation = -132.011463 kcal Electronic energy + Delta-G solvation = -21735.628985 eV Core-core repulsion = 18376.453102 eV Total energy + Delta-G solvation = -3359.175883 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.72160 -40.38507 -39.20766 -37.15263 -35.59139 -35.28112 -33.99364 -32.40068 -31.93736 -28.91707 -27.31645 -24.62796 -23.40332 -23.20216 -21.70186 -21.23347 -19.50320 -18.95664 -18.81701 -17.60390 -17.46468 -17.14693 -16.84057 -15.83992 -15.72407 -15.53631 -15.49375 -15.17638 -14.71376 -14.50155 -14.09863 -13.79721 -13.51273 -13.21403 -13.17857 -12.97182 -12.72571 -12.59640 -12.25298 -12.11226 -11.93788 -11.64808 -11.56710 -11.12740 -10.96786 -10.78350 -10.69778 -9.64800 -9.50091 -8.87565 -6.55893 0.15993 0.79317 1.25622 1.36799 1.40157 1.47137 1.57109 1.93946 2.10464 2.61182 2.64293 3.42040 3.67193 3.73125 3.91173 4.05739 4.24684 4.33356 4.41939 4.42857 4.67321 4.72294 4.80907 4.88773 4.92193 5.03770 5.26427 5.30970 5.37119 5.52207 5.64292 5.81265 5.82701 5.88607 6.19390 6.28537 6.38309 6.63991 6.71872 7.17320 7.21570 8.16852 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.020848 B = 0.006172 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.754598 B = 4535.285611 C = 5378.309949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.059 3.941 4 H 0.104 0.896 5 O -0.347 6.347 6 C 0.503 3.497 7 O -0.520 6.520 8 C -0.259 4.259 9 C -0.029 4.029 10 C -0.233 4.233 11 C -0.051 4.051 12 C -0.244 4.244 13 C 0.107 3.893 14 C -0.438 4.438 15 H 0.071 0.929 16 C 0.042 3.958 17 N -0.839 5.839 18 Si 0.963 3.037 19 H -0.244 1.244 20 H -0.278 1.278 21 H -0.251 1.251 22 C 0.528 3.472 23 N -0.819 5.819 24 O -0.571 6.571 25 H 0.052 0.948 26 H 0.021 0.979 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.113 0.887 34 H 0.296 0.704 35 H 0.421 0.579 36 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.798 -8.426 0.049 12.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C 0.000 4.000 4 H 0.121 0.879 5 O -0.265 6.265 6 C 0.353 3.647 7 O -0.411 6.411 8 C -0.261 4.261 9 C -0.047 4.047 10 C -0.251 4.251 11 C -0.069 4.069 12 C -0.262 4.262 13 C 0.103 3.897 14 C -0.466 4.466 15 H 0.089 0.911 16 C -0.173 4.173 17 N -0.465 5.465 18 Si 0.785 3.215 19 H -0.168 1.168 20 H -0.204 1.204 21 H -0.175 1.175 22 C 0.311 3.689 23 N -0.387 5.387 24 O -0.449 6.449 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.130 0.870 34 H 0.107 0.893 35 H 0.253 0.747 36 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 8.658 -8.108 0.195 11.863 hybrid contribution -0.505 -0.007 -0.572 0.763 sum 8.153 -8.114 -0.378 11.509 Atomic orbital electron populations 1.21775 0.95293 1.02128 1.01311 1.21920 0.96468 0.91989 1.05403 1.22730 0.92543 0.96785 0.87968 0.87858 1.86665 1.37475 1.64758 1.37597 1.21324 0.78445 0.75947 0.88993 1.90804 1.54633 1.59608 1.36078 1.19093 1.03161 1.11113 0.92760 1.21297 0.96873 0.94746 0.91763 1.20960 0.99576 1.06000 0.98605 1.21324 0.93508 0.95024 0.97064 1.21296 1.03131 1.06996 0.94803 1.17747 0.91005 0.87968 0.92981 1.19762 0.91501 1.40479 0.94869 0.91142 1.27005 0.97547 0.91058 1.01695 1.69581 1.08587 1.35587 1.32700 0.85558 0.77142 0.80756 0.78025 1.16811 1.20438 1.17511 1.20147 0.89103 0.76683 0.82963 1.43407 1.12351 1.65517 1.17405 1.90752 1.65711 1.47545 1.40896 0.92900 0.96002 0.90139 0.90346 0.85721 0.85726 0.83960 0.83792 0.86963 0.89333 0.74713 0.74884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.59 8.56 71.98 0.62 -3.97 16 2 C -0.12 -2.99 5.62 30.60 0.17 -2.82 16 3 C 0.06 1.86 2.67 29.85 0.08 1.94 16 4 H 0.10 3.37 7.16 -2.39 -0.02 3.35 16 5 O -0.35 -14.56 8.61 -50.75 -0.44 -15.00 16 6 C 0.50 24.37 6.31 70.20 0.44 24.81 16 7 O -0.52 -27.33 10.82 19.73 0.21 -27.12 16 8 C -0.26 -12.76 5.92 -19.71 -0.12 -12.88 16 9 C -0.03 -1.20 9.60 22.51 0.22 -0.98 16 10 C -0.23 -8.57 10.03 22.41 0.22 -8.34 16 11 C -0.05 -1.93 10.01 22.26 0.22 -1.70 16 12 C -0.24 -11.05 6.97 22.72 0.16 -10.89 16 13 C 0.11 5.57 5.04 -21.10 -0.11 5.46 16 14 C -0.44 -25.28 8.12 23.41 0.19 -25.09 16 15 H 0.07 4.58 6.30 -2.91 -0.02 4.56 16 16 C 0.04 2.29 5.50 85.37 0.47 2.76 16 17 N -0.84 -46.56 13.92 21.88 0.30 -46.25 16 18 Si 0.96 41.94 24.49 68.60 1.68 43.62 16 19 H -0.24 -9.60 6.69 99.48 0.67 -8.94 16 20 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.25 -11.19 6.73 99.48 0.67 -10.52 16 22 C 0.53 14.91 7.45 87.66 0.65 15.57 16 23 N -0.82 -12.55 8.77 -173.53 -1.52 -14.07 16 24 O -0.57 -21.68 17.35 15.70 0.27 -21.41 16 25 H 0.05 1.77 7.79 -2.39 -0.02 1.75 16 26 H 0.02 0.84 6.06 -2.38 -0.01 0.83 16 27 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.12 1.88 7.77 -2.38 -0.02 1.86 16 30 H 0.12 4.85 7.61 -2.91 -0.02 4.83 16 31 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 32 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 33 H 0.11 4.93 4.91 -2.91 -0.01 4.92 16 34 H 0.30 14.64 8.29 -92.70 -0.77 13.87 16 35 H 0.42 3.55 8.53 -92.71 -0.79 2.76 16 36 H 0.42 4.94 8.93 -92.71 -0.83 4.11 16 Total: -1.00 -74.71 302.04 3.18 -71.54 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: -0.56 Total: 24.83 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 3.22 Total: -16.14 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -1.22 Total: -60.32 kcal Atomic # 8 Polarization: -63.58 SS G_CDS: 0.05 Total: -63.53 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.68 Total: 43.62 kcal Total: -74.71 3.18 -71.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726994284.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.476 kcal (2) G-P(sol) polarization free energy of solvation -74.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds