Wall clock time and date at job start Mon Mar 30 2020 01:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47153 * 2 1 4 4 H 1.09008 * 109.46887 * 55.00079 * 3 2 1 5 5 O 1.45195 * 109.46951 * 295.00528 * 3 2 1 6 6 C 1.34800 * 117.00248 * 150.00475 * 5 3 2 7 7 O 1.21534 * 120.00069 * 359.97438 * 6 5 3 8 8 C 1.47284 * 120.00324 * 179.97438 * 6 5 3 9 9 C 1.39297 * 120.28834 * 356.62249 * 8 6 5 10 10 C 1.38196 * 120.08884 * 179.97438 * 9 8 6 11 11 C 1.38842 * 120.68152 * 0.02562 * 10 9 8 12 12 C 1.37598 * 120.58489 * 359.97438 * 11 10 9 13 13 C 1.40712 * 119.88281 * 359.74251 * 12 11 10 14 14 C 1.40863 * 120.32665 * 180.25869 * 13 12 11 15 15 H 1.08003 * 119.99697 * 141.98634 * 14 13 12 16 16 C 1.40294 * 119.99973 * 321.97754 * 14 13 12 17 17 N 1.30613 * 119.99636 * 173.07621 * 16 14 13 18 18 Si 1.86793 * 120.00258 * 353.07673 * 16 14 13 19 19 H 1.48506 * 109.47186 * 89.62196 * 18 16 14 20 20 H 1.48498 * 109.47139 * 209.61709 * 18 16 14 21 21 H 1.48496 * 109.47339 * 329.61998 * 18 16 14 22 22 C 1.50693 * 109.47162 * 175.00038 * 3 2 1 23 23 N 1.34781 * 119.99913 * 294.99766 * 22 3 2 24 24 O 1.21282 * 120.00085 * 115.00245 * 22 3 2 25 25 H 1.08989 * 109.46981 * 60.00036 * 1 2 3 26 26 H 1.08996 * 109.47043 * 299.99759 * 1 2 3 27 27 H 1.09005 * 109.47147 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47238 * 119.99732 * 2 1 3 29 29 H 1.08996 * 109.47043 * 240.00241 * 2 1 3 30 30 H 1.08003 * 119.95483 * 0.02562 * 9 8 6 31 31 H 1.08001 * 119.65891 * 180.02562 * 10 9 8 32 32 H 1.07998 * 119.70634 * 179.97438 * 11 10 9 33 33 H 1.07994 * 120.05608 * 179.97438 * 12 11 10 34 34 H 0.97007 * 120.00331 * 179.97438 * 17 16 14 35 35 H 0.96996 * 120.00406 * 0.02562 * 23 22 3 36 36 H 0.96998 * 119.99647 * 179.97438 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 8 1.6558 2.0917 -1.2406 6 6 1.4459 3.4225 -1.1956 7 8 1.5799 4.0237 -0.1479 8 6 1.0541 4.1480 -2.4160 9 6 0.9671 3.4781 -3.6341 10 6 0.5986 4.1628 -4.7766 11 6 0.3119 5.5204 -4.7274 12 6 0.3891 6.2097 -3.5391 13 6 0.7561 5.5352 -2.3599 14 6 0.8328 6.2305 -1.1373 15 1 0.5077 5.7543 -0.2240 16 6 1.3315 7.5414 -1.1058 17 7 1.2778 8.2342 0.0001 18 14 2.0724 8.2960 -2.6456 19 1 1.0072 8.9763 -3.4253 20 1 3.1123 9.2841 -2.2614 21 1 2.6867 7.2277 -3.4741 22 6 3.5419 1.4443 0.1238 23 7 4.1260 0.9828 1.2474 24 8 4.2250 1.8611 -0.7875 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.1870 2.4219 -3.6857 31 1 0.5328 3.6364 -5.7173 32 1 0.0259 6.0400 -5.6300 33 1 0.1647 7.2657 -3.5107 34 1 1.6229 9.1405 0.0221 35 1 3.5797 0.6492 1.9762 36 1 5.0927 0.9836 1.3269 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726994285.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:15 Heat of formation + Delta-G solvation = -137.022051 kcal Electronic energy + Delta-G solvation = -21671.050631 eV Core-core repulsion = 18311.657473 eV Total energy + Delta-G solvation = -3359.393158 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.72870 -40.34182 -39.14504 -37.31485 -35.63735 -35.32324 -34.02545 -32.41965 -31.97524 -28.73985 -27.34367 -24.68162 -23.34802 -23.30178 -21.78195 -21.25009 -19.50991 -19.02980 -18.75335 -18.06801 -17.47809 -16.96462 -16.29970 -16.06253 -15.83472 -15.58344 -15.39759 -15.17935 -14.86236 -14.52755 -14.20835 -13.93745 -13.48835 -13.23326 -13.04727 -12.73821 -12.62975 -12.44450 -12.31339 -12.27941 -12.06717 -11.87388 -11.66657 -11.16212 -10.90927 -10.80544 -10.76879 -9.65790 -9.51198 -8.90804 -6.58775 0.13813 0.78276 1.21184 1.33735 1.40642 1.43844 1.69199 1.92686 2.07550 2.46343 2.63061 3.40526 3.64062 3.76227 3.94619 4.08229 4.24311 4.34779 4.43768 4.46194 4.67143 4.76073 4.80436 4.90692 5.00123 5.09848 5.24476 5.32223 5.37405 5.49642 5.62958 5.77271 5.81108 5.87060 6.18453 6.27192 6.35485 6.62166 6.68680 7.11515 7.21066 8.14268 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.018644 B = 0.006315 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.445136 B = 4432.560370 C = 5108.027048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.102 4.102 3 C 0.060 3.940 4 H 0.102 0.898 5 O -0.336 6.336 6 C 0.502 3.498 7 O -0.539 6.539 8 C -0.259 4.259 9 C -0.026 4.026 10 C -0.230 4.230 11 C -0.051 4.051 12 C -0.243 4.243 13 C 0.104 3.896 14 C -0.443 4.443 15 H 0.068 0.932 16 C 0.039 3.961 17 N -0.841 5.841 18 Si 0.963 3.037 19 H -0.236 1.236 20 H -0.278 1.278 21 H -0.255 1.255 22 C 0.499 3.501 23 N -0.823 5.823 24 O -0.583 6.583 25 H 0.041 0.959 26 H 0.056 0.944 27 H 0.090 0.910 28 H 0.125 0.875 29 H 0.081 0.919 30 H 0.131 0.869 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.113 0.887 34 H 0.296 0.704 35 H 0.421 0.579 36 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.222 -14.468 -1.080 14.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.139 4.139 3 C 0.001 3.999 4 H 0.120 0.880 5 O -0.253 6.253 6 C 0.353 3.647 7 O -0.431 6.431 8 C -0.261 4.261 9 C -0.044 4.044 10 C -0.249 4.249 11 C -0.069 4.069 12 C -0.262 4.262 13 C 0.101 3.899 14 C -0.471 4.471 15 H 0.086 0.914 16 C -0.176 4.176 17 N -0.467 5.467 18 Si 0.785 3.215 19 H -0.160 1.160 20 H -0.205 1.205 21 H -0.179 1.179 22 C 0.284 3.716 23 N -0.390 5.390 24 O -0.462 6.462 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.109 0.891 28 H 0.143 0.857 29 H 0.100 0.900 30 H 0.149 0.851 31 H 0.165 0.835 32 H 0.164 0.836 33 H 0.131 0.869 34 H 0.107 0.893 35 H 0.253 0.747 36 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 0.547 -13.808 -1.204 13.871 hybrid contribution 0.589 0.647 0.773 1.168 sum 1.136 -13.161 -0.431 13.217 Atomic orbital electron populations 1.21773 0.93867 1.03499 1.01887 1.21697 0.97856 0.88792 1.05543 1.22928 0.91114 0.97893 0.87977 0.88037 1.86650 1.79485 1.22471 1.36713 1.21491 0.73565 0.80192 0.89465 1.90786 1.50991 1.67873 1.33433 1.19104 1.20225 0.95097 0.91713 1.21308 0.92552 0.99284 0.91265 1.20998 1.10807 0.94718 0.98344 1.21354 0.93920 0.94768 0.96824 1.21297 1.11140 0.99965 0.93816 1.17786 0.87798 0.91039 0.93325 1.19791 1.35012 0.97118 0.95179 0.91368 1.27045 0.93939 0.95903 1.00733 1.69573 1.35871 1.11249 1.30000 0.85563 0.79278 0.78490 0.78157 1.16023 1.20477 1.17927 1.21233 0.91354 0.76228 0.82831 1.43499 1.12236 1.65555 1.17667 1.90754 1.66170 1.47807 1.41503 0.94018 0.92467 0.89133 0.85689 0.90042 0.85107 0.83500 0.83581 0.86940 0.89332 0.74669 0.75567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.81 71.98 0.71 -2.33 16 2 C -0.10 -2.03 5.62 30.60 0.17 -1.86 16 3 C 0.06 1.92 2.36 29.85 0.07 1.99 16 4 H 0.10 3.37 7.16 -2.38 -0.02 3.36 16 5 O -0.34 -14.05 8.22 -50.73 -0.42 -14.47 16 6 C 0.50 25.70 7.82 70.20 0.55 26.25 16 7 O -0.54 -30.99 12.90 19.72 0.25 -30.74 16 8 C -0.26 -13.16 5.92 -19.71 -0.12 -13.28 16 9 C -0.03 -1.08 9.60 22.51 0.22 -0.87 16 10 C -0.23 -8.36 10.03 22.40 0.22 -8.13 16 11 C -0.05 -1.91 10.01 22.26 0.22 -1.69 16 12 C -0.24 -11.28 6.97 22.72 0.16 -11.12 16 13 C 0.10 5.63 5.04 -21.10 -0.11 5.52 16 14 C -0.44 -26.72 8.11 23.41 0.19 -26.53 16 15 H 0.07 4.62 6.30 -2.91 -0.02 4.60 16 16 C 0.04 2.20 5.50 85.37 0.47 2.67 16 17 N -0.84 -48.59 13.92 21.88 0.30 -48.29 16 18 Si 0.96 43.97 24.49 68.60 1.68 45.65 16 19 H -0.24 -9.52 6.69 99.48 0.67 -8.86 16 20 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 21 H -0.26 -12.07 6.73 99.48 0.67 -11.40 16 22 C 0.50 16.55 7.42 87.65 0.65 17.20 16 23 N -0.82 -16.43 8.77 -173.53 -1.52 -17.95 16 24 O -0.58 -26.06 17.35 15.71 0.27 -25.79 16 25 H 0.04 1.04 7.82 -2.39 -0.02 1.02 16 26 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.13 1.42 7.77 -2.39 -0.02 1.40 16 29 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.13 4.83 7.61 -2.91 -0.02 4.81 16 31 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 32 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 33 H 0.11 5.04 4.91 -2.91 -0.01 5.03 16 34 H 0.30 15.24 8.29 -92.70 -0.77 14.47 16 35 H 0.42 4.86 8.53 -92.71 -0.79 4.06 16 36 H 0.41 7.15 8.93 -92.71 -0.83 6.32 16 Total: -1.00 -81.50 308.25 3.42 -78.08 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -0.56 Total: 25.68 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 3.41 Total: -12.19 kcal Atomic # 7 Polarization: -65.02 SS G_CDS: -1.22 Total: -66.24 kcal Atomic # 8 Polarization: -71.10 SS G_CDS: 0.11 Total: -70.99 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.68 Total: 45.65 kcal Total: -81.50 3.42 -78.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726994285.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.941 kcal (2) G-P(sol) polarization free energy of solvation -81.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds