Wall clock time and date at job start Mon Mar 30 2020 01:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47001 * 2 1 4 4 H 1.08996 * 109.47010 * 304.99511 * 3 2 1 5 5 O 1.45199 * 109.47239 * 64.99938 * 3 2 1 6 6 C 1.34702 * 116.99812 * 209.99984 * 5 3 2 7 7 O 1.21458 * 120.00303 * 359.97438 * 6 5 3 8 8 C 1.47770 * 119.99898 * 180.02562 * 6 5 3 9 9 C 1.39972 * 120.03074 * 359.72450 * 8 6 5 10 10 C 1.38312 * 120.35219 * 179.76817 * 9 8 6 11 11 C 1.37756 * 120.42235 * 0.50779 * 10 9 8 12 12 C 1.40763 * 120.04927 * 359.74597 * 11 10 9 13 13 C 1.41438 * 120.17677 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99851 * 150.17912 * 13 12 11 15 15 C 1.39933 * 119.99732 * 330.17561 * 13 12 11 16 16 N 1.30830 * 119.99546 * 161.73266 * 15 13 12 17 17 Si 1.86799 * 120.00341 * 341.73013 * 15 13 12 18 18 H 1.48507 * 109.46844 * 95.41088 * 17 15 13 19 19 H 1.48496 * 109.47260 * 215.40837 * 17 15 13 20 20 H 1.48497 * 109.47283 * 335.41558 * 17 15 13 21 21 C 1.39053 * 120.03378 * 179.97438 * 8 6 5 22 22 C 1.50702 * 109.47023 * 185.00020 * 3 2 1 23 23 N 1.34773 * 120.00066 * 64.99820 * 22 3 2 24 24 O 1.21281 * 120.00007 * 245.00192 * 22 3 2 25 25 H 1.09001 * 109.47508 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47321 * 60.00285 * 1 2 3 27 27 H 1.09002 * 109.47440 * 300.00372 * 1 2 3 28 28 H 1.09000 * 109.46592 * 119.99866 * 2 1 3 29 29 H 1.08997 * 109.46915 * 240.00112 * 2 1 3 30 30 H 1.07996 * 119.82025 * 359.97438 * 9 8 6 31 31 H 1.08003 * 119.79048 * 180.25901 * 10 9 8 32 32 H 1.07999 * 119.97774 * 179.76751 * 11 10 9 33 33 H 0.97003 * 119.99426 * 180.02562 * 16 15 13 34 34 H 1.08004 * 120.20243 * 359.95794 * 21 8 6 35 35 H 0.97001 * 120.00119 * 0.02562 * 23 22 3 36 36 H 0.97003 * 119.99854 * 180.02562 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9814 -0.8418 5 8 1.6558 2.0917 1.2407 6 6 1.4460 3.4215 1.1955 7 8 1.5806 4.0224 0.1486 8 6 1.0530 4.1494 2.4200 9 6 0.8931 3.4569 3.6258 10 6 0.5301 4.1323 4.7769 11 6 0.3116 5.4921 4.7482 12 6 0.4624 6.2050 3.5439 13 6 0.2393 7.6013 3.5115 14 1 0.7773 8.2179 2.8067 15 6 -0.6786 8.1838 4.3926 16 7 -0.6373 9.4709 4.6236 17 14 -1.9627 7.1237 5.2391 18 1 -1.4718 6.7312 6.5846 19 1 -3.2258 7.8922 5.3778 20 1 -2.2114 5.9049 4.4280 21 6 0.8367 5.5223 2.3743 22 6 3.5419 1.4443 -0.1238 23 7 4.1259 0.9827 -1.2473 24 8 4.2250 1.8610 0.7875 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8899 28 1 1.8932 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.0572 2.3899 3.6582 31 1 0.4133 3.5895 5.7033 32 1 0.0248 6.0117 5.6505 33 1 -1.2733 9.8746 5.2347 34 1 0.9556 6.0604 1.4455 35 1 3.5796 0.6497 -1.9764 36 1 5.0927 0.9836 -1.3268 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726997756.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:18 Heat of formation + Delta-G solvation = -117.755079 kcal Electronic energy + Delta-G solvation = -21042.663830 eV Core-core repulsion = 17684.106150 eV Total energy + Delta-G solvation = -3358.557680 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.60149 -39.06816 -37.61410 -36.18679 -34.40348 -33.70159 -33.16023 -30.76939 -30.11544 -27.81155 -25.30091 -23.71721 -22.52245 -21.02444 -20.64233 -20.17972 -18.15435 -17.90817 -17.25240 -16.54350 -16.12978 -15.43522 -15.13089 -14.78630 -14.67309 -14.43915 -14.02929 -13.70897 -13.52795 -12.85130 -12.77715 -12.42993 -12.20542 -12.07447 -11.65306 -11.53711 -11.23833 -11.12252 -11.07964 -10.80580 -10.59542 -10.13127 -9.89630 -9.88755 -9.76474 -9.67741 -9.24906 -7.95900 -7.78490 -7.00747 -4.56064 1.67652 2.44447 2.51003 2.74289 3.05089 3.16747 3.20916 3.30059 3.47163 3.92434 4.43552 4.46056 4.59279 4.78677 4.88616 5.21119 5.28518 5.38889 5.43459 5.64240 5.82078 5.91473 6.07345 6.16393 6.30665 6.54728 6.61211 6.64305 6.66495 6.94645 7.05680 7.17558 7.39908 7.48451 7.71593 7.88071 8.05127 8.25917 8.27579 8.49876 8.69709 10.01530 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.029940 B = 0.004296 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.972887 B = 6515.936683 C = 6840.126722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C 0.068 3.932 4 H 0.110 0.890 5 O -0.322 6.322 6 C 0.516 3.484 7 O -0.519 6.519 8 C -0.094 4.094 9 C -0.188 4.188 10 C -0.089 4.089 11 C -0.211 4.211 12 C 0.079 3.921 13 C -0.444 4.444 14 H 0.094 0.906 15 C 0.084 3.916 16 N -0.804 5.804 17 Si 0.909 3.091 18 H -0.268 1.268 19 H -0.288 1.288 20 H -0.243 1.243 21 C -0.133 4.133 22 C 0.503 3.497 23 N -0.853 5.853 24 O -0.520 6.520 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.286 0.714 34 H 0.117 0.883 35 H 0.401 0.599 36 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.266 -17.408 -8.595 19.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C 0.008 3.992 4 H 0.128 0.872 5 O -0.237 6.237 6 C 0.364 3.636 7 O -0.409 6.409 8 C -0.095 4.095 9 C -0.208 4.208 10 C -0.108 4.108 11 C -0.230 4.230 12 C 0.076 3.924 13 C -0.472 4.472 14 H 0.112 0.888 15 C -0.135 4.135 16 N -0.427 5.427 17 Si 0.735 3.265 18 H -0.194 1.194 19 H -0.216 1.216 20 H -0.166 1.166 21 C -0.153 4.153 22 C 0.287 3.713 23 N -0.419 5.419 24 O -0.393 6.393 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.128 0.872 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.135 0.865 35 H 0.229 0.771 36 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 1.506 -16.639 -8.107 18.571 hybrid contribution -0.276 -0.361 -0.153 0.480 sum 1.230 -17.001 -8.261 18.941 Atomic orbital electron populations 1.21781 0.93964 1.02329 1.03150 1.21595 0.97863 0.91828 1.03735 1.22540 0.91453 0.95952 0.89207 0.87240 1.86740 1.78844 1.23513 1.34647 1.21891 0.72370 0.79729 0.89629 1.90739 1.49584 1.68078 1.32507 1.18713 1.07151 0.93549 0.90078 1.20622 1.09439 0.98573 0.92117 1.20586 0.99129 0.94287 0.96750 1.21270 1.09811 0.94461 0.97491 1.17636 0.91063 0.93514 0.90163 1.19478 1.20402 0.90793 1.16547 0.88809 1.26150 0.98151 0.95309 0.93927 1.69692 1.32425 1.12393 1.28239 0.86339 0.78884 0.81046 0.80226 1.19438 1.21566 1.16646 1.21279 1.04710 0.91033 0.98233 1.20965 0.91055 0.76892 0.82412 1.43769 1.11515 1.67775 1.18836 1.90812 1.65009 1.44667 1.38855 0.91881 0.92410 0.91312 0.89949 0.89734 0.87183 0.87864 0.87633 0.90298 0.86503 0.77107 0.76540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.81 37.16 0.36 -1.00 16 2 C -0.11 -1.01 5.62 -26.73 -0.15 -1.16 16 3 C 0.07 0.90 2.36 -27.88 -0.07 0.84 16 4 H 0.11 1.40 7.16 -51.93 -0.37 1.02 16 5 O -0.32 -5.73 8.20 -47.16 -0.39 -6.11 16 6 C 0.52 10.89 7.86 34.63 0.27 11.16 16 7 O -0.52 -11.57 15.59 -19.23 -0.30 -11.87 16 8 C -0.09 -2.13 5.87 -105.05 -0.62 -2.75 16 9 C -0.19 -3.98 9.62 -38.90 -0.37 -4.35 16 10 C -0.09 -1.90 10.01 -39.73 -0.40 -2.29 16 11 C -0.21 -4.99 7.17 -38.80 -0.28 -5.27 16 12 C 0.08 2.02 5.10 -106.87 -0.55 1.47 16 13 C -0.44 -11.98 9.57 -37.73 -0.36 -12.35 16 14 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 15 C 0.08 2.17 5.40 -17.34 -0.09 2.08 16 16 N -0.80 -21.19 13.93 55.55 0.77 -20.42 16 17 Si 0.91 20.25 24.52 -169.99 -4.17 16.08 16 18 H -0.27 -5.74 6.71 56.52 0.38 -5.36 16 19 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.24 -5.53 6.86 56.52 0.39 -5.14 16 21 C -0.13 -3.26 9.34 -38.43 -0.36 -3.62 16 22 C 0.50 7.08 7.42 -10.99 -0.08 7.00 16 23 N -0.85 -7.15 8.77 31.22 0.27 -6.88 16 24 O -0.52 -10.08 17.35 -14.05 -0.24 -10.32 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.75 7.82 -51.93 -0.41 0.35 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.47 7.77 -51.93 -0.40 0.07 16 30 H 0.11 2.08 7.59 -52.49 -0.40 1.68 16 31 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 32 H 0.11 2.45 4.72 -52.49 -0.25 2.20 16 33 H 0.29 6.81 8.30 -40.82 -0.34 6.47 16 34 H 0.12 2.86 7.64 -52.48 -0.40 2.46 16 35 H 0.40 1.89 8.54 -40.82 -0.35 1.54 16 36 H 0.40 2.93 8.93 -40.82 -0.36 2.57 16 LS Contribution 313.18 15.07 4.72 4.72 Total: -1.00 -32.66 313.18 -6.24 -38.90 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -4.23 Total: 6.15 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -2.69 Total: -10.24 kcal Atomic # 7 Polarization: -28.35 SS G_CDS: 1.05 Total: -27.30 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.93 Total: -28.31 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.17 Total: 16.08 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.66 -6.24 -38.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726997756.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.856 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds