Wall clock time and date at job start Mon Mar 30 2020 02:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00229 * 2 1 4 4 O 1.42896 * 109.47185 * 134.99535 * 3 2 1 5 5 C 1.42900 * 113.99809 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47070 * 180.02562 * 5 4 3 7 7 O 1.21291 * 119.99858 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00273 * 179.97438 * 6 5 4 9 9 C 1.39924 * 120.00116 * 174.78254 * 8 6 5 10 10 C 1.38964 * 120.03638 * 326.32491 * 9 8 6 11 11 C 1.38159 * 120.06436 * 180.02562 * 10 9 8 12 12 C 1.38172 * 120.14002 * 359.70620 * 11 10 9 13 13 C 1.38908 * 120.06877 * 0.55025 * 12 11 10 14 14 O 1.35746 * 120.03042 * 179.74752 * 13 12 11 15 15 C 1.34836 * 117.00011 * 173.82383 * 14 13 12 16 16 H 1.07998 * 119.99642 * 354.59618 * 15 14 13 17 17 C 1.38650 * 119.99834 * 174.59571 * 15 14 13 18 18 N 1.31566 * 119.99661 * 179.97438 * 17 15 14 19 19 Si 1.86792 * 120.00338 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47313 * 89.99847 * 19 17 15 21 21 H 1.48507 * 109.47288 * 209.99745 * 19 17 15 22 22 H 1.48499 * 109.47161 * 329.99918 * 19 17 15 23 23 C 1.38713 * 120.03408 * 146.34830 * 9 8 6 24 24 H 1.08002 * 120.00217 * 0.02562 * 1 2 3 25 25 H 1.07996 * 120.00222 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.00217 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46753 * 14.99561 * 3 2 1 28 28 H 1.09000 * 109.47040 * 254.99655 * 3 2 1 29 29 H 1.08990 * 109.47605 * 60.00491 * 5 4 3 30 30 H 1.08993 * 109.47329 * 299.99872 * 5 4 3 31 31 H 0.97000 * 119.99916 * 354.78962 * 8 6 5 32 32 H 1.08001 * 119.96626 * 0.02562 * 10 9 8 33 33 H 1.08005 * 119.93078 * 179.97438 * 11 10 9 34 34 H 1.08002 * 119.96324 * 180.29063 * 12 11 10 35 35 H 0.96992 * 119.99899 * 180.02562 * 18 17 15 36 36 H 1.07998 * 120.07051 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9076 2.4353 1.0329 6 6 4.9939 2.2568 2.0620 7 8 5.0901 1.2099 2.6670 8 7 5.8592 3.2600 2.3096 9 6 6.7980 3.1361 3.3397 10 6 6.4758 2.4319 4.4935 11 6 7.4021 2.3096 5.5112 12 6 8.6534 2.8814 5.3828 13 6 8.9797 3.5911 4.2342 14 8 10.2075 4.1570 4.1111 15 6 10.5053 4.7208 2.9230 16 1 9.8167 4.6324 2.0957 17 6 11.6955 5.4138 2.7635 18 7 11.9863 5.9635 1.6041 19 14 12.8861 5.5672 4.1946 20 1 13.8360 4.4259 4.1728 21 1 13.6402 6.8411 4.0770 22 1 12.1287 5.5564 5.4719 23 6 8.0513 3.7165 3.2104 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3855 2.1160 0.2659 28 1 2.4756 1.4867 -0.9926 29 1 3.2678 3.2694 1.3205 30 1 4.3579 2.6408 0.0618 31 1 5.8311 4.0681 1.7737 32 1 5.5002 1.9797 4.5948 33 1 7.1492 1.7621 6.4072 34 1 9.3770 2.7801 6.1782 35 1 12.8191 6.4480 1.4923 36 1 8.3042 4.2642 2.3146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729320656.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:06 Heat of formation + Delta-G solvation = -51.020488 kcal Electronic energy + Delta-G solvation = -20121.198820 eV Core-core repulsion = 16765.534969 eV Total energy + Delta-G solvation = -3355.663851 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.29639 -38.95872 -38.01556 -36.50064 -34.31069 -34.14265 -32.37763 -30.01407 -29.17933 -27.88724 -25.80228 -25.19828 -22.25821 -21.81017 -20.48444 -19.94174 -18.12875 -17.86673 -17.31042 -16.68671 -16.60362 -15.62392 -15.38359 -15.17070 -14.88565 -14.32442 -14.07816 -13.77875 -13.62470 -13.41067 -13.08855 -12.57051 -12.44823 -12.30273 -12.13368 -11.72103 -11.32956 -11.20094 -10.99055 -10.72346 -10.31215 -10.28922 -9.95232 -9.68879 -9.56864 -9.49400 -8.86739 -7.83563 -7.32133 -6.44609 -4.11871 1.77363 1.85974 2.24945 2.71951 2.82969 3.21811 3.24790 3.39219 3.84342 4.21994 4.46088 4.55202 4.70439 4.76217 4.85626 4.86593 4.91960 5.03814 5.06201 5.15106 5.51249 5.60489 5.89473 5.94851 6.13024 6.16798 6.22333 6.27557 6.45357 6.71424 6.84997 6.93190 7.16869 7.18438 7.53072 7.65051 7.74947 7.99890 8.24150 8.90916 9.53216 10.63124 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.032983 B = 0.003145 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.714156 B = 8899.708020 C = 9619.975915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 C 0.086 3.914 4 O -0.359 6.359 5 C 0.046 3.954 6 C 0.510 3.490 7 O -0.498 6.498 8 N -0.668 5.668 9 C 0.181 3.819 10 C -0.198 4.198 11 C -0.064 4.064 12 C -0.200 4.200 13 C 0.174 3.826 14 O -0.216 6.216 15 C -0.389 4.389 16 H 0.105 0.895 17 C 0.063 3.937 18 N -0.881 5.881 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.259 1.259 23 C -0.243 4.243 24 H 0.097 0.903 25 H 0.105 0.895 26 H 0.119 0.881 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.409 0.591 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.279 0.721 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.337 -4.676 -2.519 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.167 4.167 3 C 0.010 3.990 4 O -0.277 6.277 5 C -0.034 4.034 6 C 0.296 3.704 7 O -0.371 6.371 8 N -0.315 5.315 9 C 0.088 3.912 10 C -0.219 4.219 11 C -0.083 4.083 12 C -0.219 4.219 13 C 0.121 3.879 14 O -0.121 6.121 15 C -0.465 4.465 16 H 0.122 0.878 17 C -0.140 4.140 18 N -0.519 5.519 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.265 4.265 24 H 0.116 0.884 25 H 0.123 0.877 26 H 0.137 0.863 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.244 0.756 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.089 0.911 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.940 -5.460 -1.978 18.857 hybrid contribution 0.493 0.864 -0.256 1.027 sum -17.447 -4.596 -2.234 18.181 Atomic orbital electron populations 1.23833 0.95487 1.02306 1.00181 1.22727 0.95615 0.98243 1.00071 1.21627 0.88735 0.96236 0.92431 1.88046 1.44328 1.34863 1.60465 1.22178 0.93097 0.89323 0.98820 1.20263 0.82402 0.83794 0.83940 1.90756 1.71112 1.26118 1.49108 1.43350 1.33736 1.19661 1.34735 1.17382 0.88038 0.98653 0.87132 1.20621 1.01117 1.06773 0.93395 1.20537 0.92432 0.97610 0.97680 1.20257 0.98190 1.05172 0.98307 1.18809 0.84646 0.91601 0.92826 1.83615 1.27102 1.64904 1.36430 1.20724 1.06477 1.32951 0.86334 0.87806 1.24467 0.97156 0.94758 0.97613 1.69644 1.25196 1.33850 1.23170 0.86171 0.80432 0.77665 0.82595 1.19833 1.20848 1.18295 1.20928 0.92353 1.10531 1.02657 0.88422 0.87712 0.86348 0.92502 0.91959 0.89895 0.89881 0.75599 0.86134 0.86355 0.86315 0.91051 0.84555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.24 14.31 29.02 0.42 -0.83 16 2 C -0.15 -1.27 9.89 -36.03 -0.36 -1.63 16 3 C 0.09 0.74 6.35 36.01 0.23 0.97 16 4 O -0.36 -4.48 9.86 -55.14 -0.54 -5.03 16 5 C 0.05 0.47 6.42 36.01 0.23 0.71 16 6 C 0.51 7.65 7.64 -10.98 -0.08 7.57 16 7 O -0.50 -9.69 14.21 -14.36 -0.20 -9.90 16 8 N -0.67 -9.85 5.34 -9.88 -0.05 -9.91 16 9 C 0.18 3.40 6.27 -83.72 -0.52 2.87 16 10 C -0.20 -3.72 8.65 -39.34 -0.34 -4.06 16 11 C -0.06 -1.15 10.03 -39.63 -0.40 -1.55 16 12 C -0.20 -4.01 9.99 -39.36 -0.39 -4.40 16 13 C 0.17 4.00 6.64 -39.13 -0.26 3.74 16 14 O -0.22 -5.62 8.58 0.05 0.00 -5.62 16 15 C -0.39 -10.78 9.90 30.88 0.31 -10.47 16 16 H 0.10 2.92 5.53 -52.49 -0.29 2.63 16 17 C 0.06 1.75 5.49 -17.51 -0.10 1.65 16 18 N -0.88 -25.04 13.96 55.48 0.77 -24.26 16 19 Si 0.91 21.45 28.62 -169.99 -4.86 16.59 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 23 C -0.24 -5.16 9.04 -39.21 -0.35 -5.52 16 24 H 0.10 0.55 7.90 -52.49 -0.41 0.14 16 25 H 0.10 0.59 8.06 -52.49 -0.42 0.17 16 26 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 27 H 0.06 0.39 7.86 -51.93 -0.41 -0.02 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.41 4.57 8.82 -40.82 -0.36 4.21 16 32 H 0.12 2.24 6.44 -52.49 -0.34 1.90 16 33 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 34 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 35 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.14 2.95 5.71 -52.49 -0.30 2.65 16 LS Contribution 319.75 15.07 4.82 4.82 Total: -1.00 -33.26 319.75 -5.90 -39.17 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -4.21 Total: 5.09 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -1.63 Total: -10.95 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.72 Total: -34.17 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.75 Total: -20.55 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.86 Total: 16.59 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.26 -5.90 -39.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729320656.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.854 kcal (2) G-P(sol) polarization free energy of solvation -33.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds