Wall clock time and date at job start Mon Mar 30 2020 02:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00229 * 2 1 4 4 O 1.42896 * 109.47185 * 134.99535 * 3 2 1 5 5 C 1.42900 * 113.99809 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47070 * 180.02562 * 5 4 3 7 7 O 1.21291 * 119.99858 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00273 * 179.97438 * 6 5 4 9 9 C 1.39924 * 120.00116 * 174.78254 * 8 6 5 10 10 C 1.38964 * 120.03638 * 326.32491 * 9 8 6 11 11 C 1.38159 * 120.06436 * 180.02562 * 10 9 8 12 12 C 1.38172 * 120.14002 * 359.70620 * 11 10 9 13 13 C 1.38908 * 120.06877 * 0.55025 * 12 11 10 14 14 O 1.35746 * 120.03042 * 179.74752 * 13 12 11 15 15 C 1.34836 * 117.00011 * 173.82383 * 14 13 12 16 16 H 1.07998 * 119.99642 * 354.59618 * 15 14 13 17 17 C 1.38650 * 119.99834 * 174.59571 * 15 14 13 18 18 N 1.31566 * 119.99661 * 179.97438 * 17 15 14 19 19 Si 1.86792 * 120.00338 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47313 * 89.99847 * 19 17 15 21 21 H 1.48507 * 109.47288 * 209.99745 * 19 17 15 22 22 H 1.48499 * 109.47161 * 329.99918 * 19 17 15 23 23 C 1.38713 * 120.03408 * 146.34830 * 9 8 6 24 24 H 1.08002 * 120.00217 * 0.02562 * 1 2 3 25 25 H 1.07996 * 120.00222 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.00217 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46753 * 14.99561 * 3 2 1 28 28 H 1.09000 * 109.47040 * 254.99655 * 3 2 1 29 29 H 1.08990 * 109.47605 * 60.00491 * 5 4 3 30 30 H 1.08993 * 109.47329 * 299.99872 * 5 4 3 31 31 H 0.97000 * 119.99916 * 354.78962 * 8 6 5 32 32 H 1.08001 * 119.96626 * 0.02562 * 10 9 8 33 33 H 1.08005 * 119.93078 * 179.97438 * 11 10 9 34 34 H 1.08002 * 119.96324 * 180.29063 * 12 11 10 35 35 H 0.96992 * 119.99899 * 180.02562 * 18 17 15 36 36 H 1.07998 * 120.07051 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9076 2.4353 1.0329 6 6 4.9939 2.2568 2.0620 7 8 5.0901 1.2099 2.6670 8 7 5.8592 3.2600 2.3096 9 6 6.7980 3.1361 3.3397 10 6 6.4758 2.4319 4.4935 11 6 7.4021 2.3096 5.5112 12 6 8.6534 2.8814 5.3828 13 6 8.9797 3.5911 4.2342 14 8 10.2075 4.1570 4.1111 15 6 10.5053 4.7208 2.9230 16 1 9.8167 4.6324 2.0957 17 6 11.6955 5.4138 2.7635 18 7 11.9863 5.9635 1.6041 19 14 12.8861 5.5672 4.1946 20 1 13.8360 4.4259 4.1728 21 1 13.6402 6.8411 4.0770 22 1 12.1287 5.5564 5.4719 23 6 8.0513 3.7165 3.2104 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3855 2.1160 0.2659 28 1 2.4756 1.4867 -0.9926 29 1 3.2678 3.2694 1.3205 30 1 4.3579 2.6408 0.0618 31 1 5.8311 4.0681 1.7737 32 1 5.5002 1.9797 4.5948 33 1 7.1492 1.7621 6.4072 34 1 9.3770 2.7801 6.1782 35 1 12.8191 6.4480 1.4923 36 1 8.3042 4.2642 2.3146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729320656.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:06 Heat of formation + Delta-G solvation = -73.104792 kcal Electronic energy + Delta-G solvation = -20122.156467 eV Core-core repulsion = 16765.534969 eV Total energy + Delta-G solvation = -3356.621498 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.64508 -40.51735 -39.00317 -38.05096 -35.71536 -34.77403 -34.40295 -31.38628 -30.76620 -28.99341 -27.19838 -26.46308 -23.64174 -23.43972 -21.57907 -20.87563 -19.90695 -19.45058 -18.39626 -17.84902 -17.47991 -16.93039 -16.84569 -16.38740 -16.18932 -15.82406 -15.64574 -15.37914 -14.95259 -14.68179 -14.20767 -14.17544 -13.98727 -13.37374 -13.24256 -13.13126 -12.78208 -12.75123 -12.40719 -12.08415 -11.89156 -11.56524 -11.30706 -11.02954 -10.92029 -10.78457 -10.26080 -9.42582 -8.95996 -8.49766 -6.22504 0.33767 0.62397 1.18018 1.33836 1.37288 1.51110 1.53446 1.77498 2.29200 2.75967 3.00785 3.08951 3.10333 3.57791 4.04954 4.10528 4.15525 4.21185 4.25730 4.29269 4.39803 4.46104 4.58943 4.61211 4.68374 4.89443 4.98651 5.32616 5.35522 5.45191 5.61116 5.66324 5.69658 5.74277 5.87568 6.05726 6.19963 6.42029 6.84723 7.04975 7.57586 8.61473 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.032983 B = 0.003145 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.714156 B = 8899.708020 C = 9619.975915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.179 4.179 3 C 0.083 3.917 4 O -0.396 6.396 5 C 0.052 3.948 6 C 0.508 3.492 7 O -0.548 6.548 8 N -0.660 5.660 9 C 0.183 3.817 10 C -0.195 4.195 11 C -0.053 4.053 12 C -0.201 4.201 13 C 0.140 3.860 14 O -0.239 6.239 15 C -0.398 4.398 16 H 0.084 0.916 17 C 0.012 3.988 18 N -0.921 5.921 19 Si 0.968 3.032 20 H -0.268 1.268 21 H -0.268 1.268 22 H -0.261 1.261 23 C -0.253 4.253 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.104 0.896 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.121 0.879 30 H 0.113 0.887 31 H 0.426 0.574 32 H 0.128 0.872 33 H 0.159 0.841 34 H 0.135 0.865 35 H 0.285 0.715 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.247 -4.830 -1.793 20.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.197 4.197 3 C 0.008 3.992 4 O -0.315 6.315 5 C -0.027 4.027 6 C 0.296 3.704 7 O -0.424 6.424 8 N -0.308 5.308 9 C 0.088 3.912 10 C -0.215 4.215 11 C -0.071 4.071 12 C -0.221 4.221 13 C 0.090 3.910 14 O -0.146 6.146 15 C -0.474 4.474 16 H 0.101 0.899 17 C -0.187 4.187 18 N -0.562 5.562 19 Si 0.790 3.210 20 H -0.193 1.193 21 H -0.193 1.193 22 H -0.186 1.186 23 C -0.274 4.274 24 H 0.132 0.868 25 H 0.132 0.868 26 H 0.122 0.878 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.138 0.862 30 H 0.131 0.869 31 H 0.264 0.736 32 H 0.146 0.854 33 H 0.177 0.823 34 H 0.153 0.847 35 H 0.094 0.906 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -19.901 -5.603 -1.277 20.714 hybrid contribution 0.767 0.754 -0.480 1.177 sum -19.135 -4.849 -1.757 19.817 Atomic orbital electron populations 1.24059 0.94937 1.03555 0.97677 1.22788 0.96378 0.98059 1.02462 1.21821 0.88213 0.96768 0.92399 1.87995 1.45575 1.36098 1.61873 1.22272 0.92168 0.89814 0.98406 1.21212 0.82579 0.82617 0.83966 1.90727 1.72417 1.27996 1.51232 1.43356 1.32767 1.20662 1.33968 1.17455 0.87876 0.97554 0.88296 1.20924 1.01560 1.05710 0.93338 1.20979 0.91051 0.96374 0.98708 1.20553 0.99403 1.04447 0.97681 1.19356 0.84368 0.92645 0.94633 1.83560 1.28958 1.66618 1.35507 1.20688 1.06573 1.33330 0.86827 0.89899 1.25244 0.98718 0.94592 1.00098 1.69719 1.26193 1.35367 1.24872 0.85249 0.78267 0.78275 0.79162 1.19261 1.19303 1.18567 1.20910 0.93372 1.11158 1.02008 0.86839 0.86783 0.87776 0.90442 0.90546 0.86186 0.86907 0.73560 0.85427 0.82337 0.84692 0.90571 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 14.31 67.78 0.97 -0.95 16 2 C -0.18 -2.84 9.89 25.65 0.25 -2.59 16 3 C 0.08 1.25 6.35 71.24 0.45 1.70 16 4 O -0.40 -9.18 9.86 -129.94 -1.28 -10.46 16 5 C 0.05 0.94 6.42 71.24 0.46 1.39 16 6 C 0.51 14.42 7.64 87.66 0.67 15.09 16 7 O -0.55 -20.89 14.21 15.97 0.23 -20.66 16 8 N -0.66 -18.60 5.34 -303.55 -1.62 -20.22 16 9 C 0.18 6.73 6.27 38.14 0.24 6.97 16 10 C -0.19 -6.96 8.65 22.43 0.19 -6.77 16 11 C -0.05 -1.77 10.03 22.24 0.22 -1.54 16 12 C -0.20 -7.82 9.99 22.41 0.22 -7.60 16 13 C 0.14 6.51 6.64 22.56 0.15 6.66 16 14 O -0.24 -12.77 8.58 -22.75 -0.20 -12.96 16 15 C -0.40 -22.86 9.90 67.92 0.67 -22.19 16 16 H 0.08 4.94 5.53 -2.91 -0.02 4.92 16 17 C 0.01 0.69 5.49 84.83 0.47 1.16 16 18 N -0.92 -53.78 13.96 21.61 0.30 -53.48 16 19 Si 0.97 44.68 28.62 68.60 1.96 46.64 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 23 C -0.25 -10.94 9.04 22.51 0.20 -10.73 16 24 H 0.11 0.94 7.90 -2.91 -0.02 0.92 16 25 H 0.11 1.07 8.06 -2.91 -0.02 1.04 16 26 H 0.10 1.88 8.06 -2.91 -0.02 1.86 16 27 H 0.08 0.81 7.86 -2.39 -0.02 0.79 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.43 8.88 8.82 -92.71 -0.82 8.06 16 32 H 0.13 4.48 6.44 -2.91 -0.02 4.46 16 33 H 0.16 4.04 8.06 -2.91 -0.02 4.01 16 34 H 0.14 4.74 8.06 -2.91 -0.02 4.72 16 35 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.12 5.59 5.71 -2.91 -0.02 5.57 16 Total: -1.00 -74.54 319.75 4.86 -69.68 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.29 Total: 20.87 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 5.18 Total: -19.41 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -1.32 Total: -73.70 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -1.25 Total: -44.08 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.96 Total: 46.64 kcal Total: -74.54 4.86 -69.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729320656.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.424 kcal (2) G-P(sol) polarization free energy of solvation -74.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds