Wall clock time and date at job start Mon Mar 30 2020 02:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36001 * 117.00106 * 2 1 4 4 C 1.37911 * 119.82736 * 0.29356 * 3 2 1 5 5 C 1.39797 * 120.12627 * 180.30761 * 4 3 2 6 6 C 1.47496 * 120.25221 * 179.89962 * 5 4 3 7 7 O 1.21616 * 120.00278 * 179.72683 * 6 5 4 8 8 N 1.34777 * 119.99867 * 359.71610 * 6 5 4 9 9 C 1.36905 * 120.00014 * 180.02562 * 8 6 5 10 10 H 1.08005 * 119.99860 * 359.97438 * 9 8 6 11 11 C 1.39026 * 120.00160 * 179.73048 * 9 8 6 12 12 N 1.31376 * 119.99809 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99919 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46719 * 90.00009 * 13 11 9 15 15 H 1.48501 * 109.46793 * 209.99664 * 13 11 9 16 16 H 1.48497 * 109.47216 * 330.00110 * 13 11 9 17 17 C 1.39858 * 119.49469 * 359.62000 * 5 4 3 18 18 C 1.37376 * 119.95437 * 0.18479 * 17 5 4 19 19 C 1.39053 * 120.98118 * 359.78534 * 18 17 5 20 20 O 1.36090 * 111.20256 * 180.69134 * 19 18 17 21 21 C 1.43746 * 109.28001 * 341.05213 * 20 19 18 22 22 H 1.09000 * 110.74781 * 269.44333 * 21 20 19 23 23 C 1.53003 * 110.90511 * 146.17420 * 21 20 19 24 24 C 1.51692 * 132.01280 * 179.45199 * 18 17 5 25 25 H 1.08997 * 109.46946 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.46952 * 300.00527 * 1 2 3 27 27 H 1.09006 * 109.46859 * 60.00244 * 1 2 3 28 28 H 1.07999 * 119.93756 * 0.05284 * 4 3 2 29 29 H 0.97005 * 120.00189 * 0.02562 * 8 6 5 30 30 H 0.97004 * 120.00192 * 180.02562 * 12 11 9 31 31 H 1.07992 * 120.02138 * 180.16067 * 17 5 4 32 32 H 1.09007 * 109.46819 * 306.52413 * 23 21 20 33 33 H 1.08994 * 109.47026 * 66.51765 * 23 21 20 34 34 H 1.08996 * 109.47169 * 186.52413 * 23 21 20 35 35 H 1.09001 * 110.94193 * 313.95095 * 24 18 17 36 36 H 1.09004 * 110.94081 * 77.61372 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2919 2.3661 0.0061 5 6 1.9201 3.6150 -0.0003 6 6 1.1157 4.8514 0.0040 7 8 1.6669 5.9354 0.0033 8 7 -0.2301 4.7797 0.0084 9 6 -0.9767 5.9273 0.0118 10 1 -0.4871 6.8900 0.0115 11 6 -2.3650 5.8534 0.0107 12 7 -2.9604 4.6823 0.0058 13 14 -3.3836 7.4192 0.0162 14 1 -3.6526 7.8395 -1.3826 15 1 -4.6703 7.1702 0.7144 16 1 -2.6376 8.4926 0.7208 17 6 3.3170 3.6832 -0.0049 18 6 4.0601 2.5278 -0.0070 19 6 3.4447 1.2809 0.0000 20 8 4.3645 0.2780 0.0118 21 6 5.6330 0.7923 -0.4272 22 1 5.7381 0.6903 -1.5074 23 6 6.7857 0.0925 0.2958 24 6 5.5571 2.2835 -0.0226 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.2137 2.3052 0.0118 29 1 -0.6698 3.9150 0.0091 30 1 -3.9291 4.6307 0.0047 31 1 3.8111 4.6434 -0.0073 32 1 6.6316 0.1573 1.3729 33 1 6.8200 -0.9548 -0.0039 34 1 7.7263 0.5766 0.0335 35 1 6.0470 2.9140 -0.7646 36 1 5.9880 2.4418 0.9661 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749608718.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:52 Heat of formation + Delta-G solvation = -81.993763 kcal Electronic energy + Delta-G solvation = -21143.110818 eV Core-core repulsion = 17786.103866 eV Total energy + Delta-G solvation = -3357.006953 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.08917 -39.04434 -38.25380 -35.97957 -34.10070 -32.89199 -31.66203 -30.64326 -29.48698 -27.31899 -26.42151 -25.11875 -22.86578 -21.69697 -21.24973 -19.55382 -18.34371 -17.51084 -17.26776 -16.54668 -16.01861 -15.55251 -15.12012 -14.79425 -14.61135 -14.00559 -13.66122 -13.48948 -13.41379 -13.10032 -12.95384 -12.78376 -12.28998 -12.08325 -12.01310 -11.66268 -11.34116 -11.29399 -11.20127 -11.04494 -10.84440 -10.47130 -10.40715 -10.33286 -9.64391 -8.56830 -8.33041 -8.13242 -7.58310 -6.60872 -3.93497 1.25092 1.62822 3.10072 3.19005 3.23809 3.25748 3.46808 3.57591 4.04724 4.39279 4.45183 4.51244 4.82605 4.90438 5.05495 5.13587 5.24295 5.25178 5.36782 5.40703 5.49659 5.51762 5.59213 5.64499 5.71999 5.77966 5.83958 5.93813 6.11851 6.45265 6.53997 6.76983 6.82602 7.06490 7.38889 7.66203 7.91700 8.45341 9.01409 9.36643 9.92321 10.56229 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.027903 B = 0.004440 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.252670 B = 6304.615120 C = 7262.932393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.316 6.316 3 C 0.109 3.891 4 C -0.160 4.160 5 C -0.080 4.080 6 C 0.470 3.530 7 O -0.595 6.595 8 N -0.542 5.542 9 C -0.294 4.294 10 H 0.109 0.891 11 C 0.024 3.976 12 N -0.891 5.891 13 Si 0.935 3.065 14 H -0.276 1.276 15 H -0.282 1.282 16 H -0.267 1.267 17 C -0.062 4.062 18 C -0.146 4.146 19 C 0.073 3.927 20 O -0.295 6.295 21 C 0.074 3.926 22 H 0.084 0.916 23 C -0.148 4.148 24 C -0.102 4.102 25 H 0.098 0.902 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.142 0.858 29 H 0.392 0.608 30 H 0.276 0.724 31 H 0.137 0.863 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.319 -10.296 -0.461 15.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.230 6.230 3 C 0.064 3.936 4 C -0.180 4.180 5 C -0.084 4.084 6 C 0.258 3.742 7 O -0.482 6.482 8 N -0.176 5.176 9 C -0.424 4.424 10 H 0.127 0.873 11 C -0.180 4.180 12 N -0.531 5.531 13 Si 0.762 3.238 14 H -0.201 1.201 15 H -0.207 1.207 16 H -0.191 1.191 17 C -0.082 4.082 18 C -0.147 4.147 19 C 0.027 3.973 20 O -0.210 6.210 21 C 0.018 3.982 22 H 0.102 0.898 23 C -0.205 4.205 24 C -0.139 4.139 25 H 0.116 0.884 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.159 0.841 29 H 0.227 0.773 30 H 0.086 0.914 31 H 0.155 0.845 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.488 -10.036 -0.396 15.260 hybrid contribution -1.151 0.385 -0.054 1.215 sum 10.338 -9.650 -0.450 14.149 Atomic orbital electron populations 1.23096 0.78258 1.03720 1.02062 1.86107 1.21314 1.26179 1.89438 1.17965 0.87886 0.85054 1.02720 1.21225 1.00224 0.90794 1.05774 1.19988 0.93763 0.93265 1.01392 1.17526 0.82619 0.87837 0.86227 1.90603 1.71249 1.28825 1.57536 1.41888 1.04374 1.09766 1.61615 1.19863 0.88156 0.87712 1.46647 0.87329 1.25383 0.97062 0.98767 0.96751 1.69584 1.11063 1.23876 1.48530 0.85766 0.78625 0.80824 0.78621 1.20136 1.20702 1.19122 1.20228 0.92066 0.97351 0.98547 1.20431 0.95061 0.92509 1.06675 1.18704 0.87701 0.87347 1.03581 1.86842 1.18206 1.33322 1.82641 1.23332 0.83434 0.92346 0.99051 0.89838 1.21862 0.96078 1.01179 1.01347 1.21854 0.92499 0.96033 1.03510 0.88406 0.92299 0.92289 0.84052 0.77305 0.91414 0.84541 0.91415 0.91487 0.90441 0.88963 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -5.26 10.50 -19.76 -0.21 -5.46 16 3 C 0.11 1.94 6.70 -39.05 -0.26 1.68 16 4 C -0.16 -2.98 8.51 -39.12 -0.33 -3.32 16 5 C -0.08 -1.66 5.88 -104.94 -0.62 -2.28 16 6 C 0.47 11.74 7.72 -12.49 -0.10 11.65 16 7 O -0.60 -16.65 15.93 5.26 0.08 -16.56 16 8 N -0.54 -13.93 5.23 -11.93 -0.06 -13.99 16 9 C -0.29 -8.08 9.68 -14.99 -0.15 -8.22 16 10 H 0.11 3.10 7.15 -52.48 -0.38 2.73 16 11 C 0.02 0.61 5.50 -17.45 -0.10 0.52 16 12 N -0.89 -23.26 13.05 55.50 0.72 -22.54 16 13 Si 0.94 20.33 29.55 -169.99 -5.02 15.30 16 14 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 15 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 17 C -0.06 -1.15 9.58 -39.29 -0.38 -1.53 16 18 C -0.15 -2.35 6.25 -104.14 -0.65 -3.00 16 19 C 0.07 1.25 6.98 -38.62 -0.27 0.98 16 20 O -0.30 -4.65 10.81 -20.04 -0.22 -4.87 16 21 C 0.07 0.85 4.25 -25.84 -0.11 0.74 16 22 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 23 C -0.15 -1.23 9.59 37.16 0.36 -0.87 16 24 C -0.10 -1.19 6.65 -26.50 -0.18 -1.37 16 25 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.06 0.76 7.63 -51.93 -0.40 0.36 16 27 H 0.06 0.75 7.66 -51.93 -0.40 0.36 16 28 H 0.14 2.53 4.58 -52.49 -0.24 2.29 16 29 H 0.39 9.50 5.93 -40.82 -0.24 9.26 16 30 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.14 2.50 7.66 -52.49 -0.40 2.10 16 32 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.96 7.93 -51.93 -0.41 0.55 16 LS Contribution 309.19 15.07 4.66 4.66 Total: -1.00 -31.87 309.19 -5.96 -37.83 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -4.14 Total: 9.35 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -1.78 Total: -3.73 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.66 Total: -36.53 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.34 Total: -26.89 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.87 -5.96 -37.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749608718.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.163 kcal (2) G-P(sol) polarization free energy of solvation -31.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds