Wall clock time and date at job start Mon Mar 30 2020 02:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36001 * 117.00106 * 2 1 4 4 C 1.37911 * 119.82736 * 0.29356 * 3 2 1 5 5 C 1.39797 * 120.12627 * 180.30761 * 4 3 2 6 6 C 1.47496 * 120.25221 * 179.89962 * 5 4 3 7 7 O 1.21616 * 120.00278 * 179.72683 * 6 5 4 8 8 N 1.34777 * 119.99867 * 359.71610 * 6 5 4 9 9 C 1.36905 * 120.00014 * 180.02562 * 8 6 5 10 10 H 1.08005 * 119.99860 * 359.97438 * 9 8 6 11 11 C 1.39026 * 120.00160 * 179.73048 * 9 8 6 12 12 N 1.31376 * 119.99809 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99919 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46719 * 90.00009 * 13 11 9 15 15 H 1.48501 * 109.46793 * 209.99664 * 13 11 9 16 16 H 1.48497 * 109.47216 * 330.00110 * 13 11 9 17 17 C 1.39858 * 119.49469 * 359.62000 * 5 4 3 18 18 C 1.37376 * 119.95437 * 0.18479 * 17 5 4 19 19 C 1.39053 * 120.98118 * 359.78534 * 18 17 5 20 20 O 1.36090 * 111.20256 * 180.69134 * 19 18 17 21 21 C 1.43746 * 109.28001 * 341.05213 * 20 19 18 22 22 H 1.09000 * 110.74781 * 269.44333 * 21 20 19 23 23 C 1.53003 * 110.90511 * 146.17420 * 21 20 19 24 24 C 1.51692 * 132.01280 * 179.45199 * 18 17 5 25 25 H 1.08997 * 109.46946 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.46952 * 300.00527 * 1 2 3 27 27 H 1.09006 * 109.46859 * 60.00244 * 1 2 3 28 28 H 1.07999 * 119.93756 * 0.05284 * 4 3 2 29 29 H 0.97005 * 120.00189 * 0.02562 * 8 6 5 30 30 H 0.97004 * 120.00192 * 180.02562 * 12 11 9 31 31 H 1.07992 * 120.02138 * 180.16067 * 17 5 4 32 32 H 1.09007 * 109.46819 * 306.52413 * 23 21 20 33 33 H 1.08994 * 109.47026 * 66.51765 * 23 21 20 34 34 H 1.08996 * 109.47169 * 186.52413 * 23 21 20 35 35 H 1.09001 * 110.94193 * 313.95095 * 24 18 17 36 36 H 1.09004 * 110.94081 * 77.61372 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2919 2.3661 0.0061 5 6 1.9201 3.6150 -0.0003 6 6 1.1157 4.8514 0.0040 7 8 1.6669 5.9354 0.0033 8 7 -0.2301 4.7797 0.0084 9 6 -0.9767 5.9273 0.0118 10 1 -0.4871 6.8900 0.0115 11 6 -2.3650 5.8534 0.0107 12 7 -2.9604 4.6823 0.0058 13 14 -3.3836 7.4192 0.0162 14 1 -3.6526 7.8395 -1.3826 15 1 -4.6703 7.1702 0.7144 16 1 -2.6376 8.4926 0.7208 17 6 3.3170 3.6832 -0.0049 18 6 4.0601 2.5278 -0.0070 19 6 3.4447 1.2809 0.0000 20 8 4.3645 0.2780 0.0118 21 6 5.6330 0.7923 -0.4272 22 1 5.7381 0.6903 -1.5074 23 6 6.7857 0.0925 0.2958 24 6 5.5571 2.2835 -0.0226 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.2137 2.3052 0.0118 29 1 -0.6698 3.9150 0.0091 30 1 -3.9291 4.6307 0.0047 31 1 3.8111 4.6434 -0.0073 32 1 6.6316 0.1573 1.3729 33 1 6.8200 -0.9548 -0.0039 34 1 7.7263 0.5766 0.0335 35 1 6.0470 2.9140 -0.7646 36 1 5.9880 2.4418 0.9661 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749608718.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:52 Heat of formation + Delta-G solvation = -103.601335 kcal Electronic energy + Delta-G solvation = -21144.047793 eV Core-core repulsion = 17786.103866 eV Total energy + Delta-G solvation = -3357.943927 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.35376 -40.51014 -39.89908 -37.44953 -36.12232 -33.92848 -33.51396 -32.01212 -30.83460 -28.49033 -27.76575 -26.73172 -24.46425 -22.65706 -22.55527 -21.27787 -20.25404 -18.93598 -18.55840 -17.92042 -17.46123 -16.89735 -16.70610 -16.34927 -15.82462 -15.79138 -15.51856 -14.98868 -14.68764 -14.25756 -14.11666 -13.82404 -13.60947 -13.35068 -13.30281 -13.01692 -12.94131 -12.58455 -12.48051 -12.35925 -12.14015 -12.12455 -11.92519 -11.71817 -11.53612 -10.59163 -10.15644 -9.66958 -8.97099 -8.58552 -6.03018 -0.23139 0.21953 1.38441 1.41108 1.54414 1.89514 2.11806 2.24916 2.28809 2.68195 2.97731 3.24358 3.39398 3.60935 3.82847 3.92259 4.06083 4.14883 4.19317 4.28045 4.35505 4.35648 4.55498 4.70347 4.71857 4.77709 4.88239 4.93316 5.08204 5.15428 5.26946 5.29709 5.33626 5.43233 5.85441 5.89528 6.36400 6.46063 6.98786 7.37887 7.94423 8.58774 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.027903 B = 0.004440 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.252670 B = 6304.615120 C = 7262.932393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.101 3.899 4 C -0.155 4.155 5 C -0.109 4.109 6 C 0.468 3.532 7 O -0.633 6.633 8 N -0.550 5.550 9 C -0.338 4.338 10 H 0.086 0.914 11 C -0.008 4.008 12 N -0.909 5.909 13 Si 1.000 3.000 14 H -0.268 1.268 15 H -0.267 1.267 16 H -0.271 1.271 17 C -0.064 4.064 18 C -0.141 4.141 19 C 0.077 3.923 20 O -0.308 6.308 21 C 0.067 3.933 22 H 0.099 0.901 23 C -0.143 4.143 24 C -0.098 4.098 25 H 0.131 0.869 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.143 0.857 29 H 0.396 0.604 30 H 0.284 0.716 31 H 0.134 0.866 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.531 -11.638 -0.600 17.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.238 6.238 3 C 0.055 3.945 4 C -0.175 4.175 5 C -0.113 4.113 6 C 0.258 3.742 7 O -0.522 6.522 8 N -0.184 5.184 9 C -0.467 4.467 10 H 0.104 0.896 11 C -0.209 4.209 12 N -0.548 5.548 13 Si 0.822 3.178 14 H -0.193 1.193 15 H -0.191 1.191 16 H -0.195 1.195 17 C -0.084 4.084 18 C -0.142 4.142 19 C 0.031 3.969 20 O -0.223 6.223 21 C 0.012 3.988 22 H 0.116 0.884 23 C -0.199 4.199 24 C -0.134 4.134 25 H 0.149 0.851 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.160 0.840 29 H 0.232 0.768 30 H 0.093 0.907 31 H 0.152 0.848 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.136 0.864 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.704 -11.425 -0.538 17.094 hybrid contribution -1.378 0.615 -0.021 1.509 sum 11.327 -10.809 -0.558 15.667 Atomic orbital electron populations 1.23368 0.76538 1.05903 1.01992 1.86106 1.23098 1.25392 1.89237 1.18052 0.88552 0.85147 1.02711 1.21123 1.00362 0.90457 1.05562 1.19692 0.94427 0.92074 1.05082 1.18182 0.82620 0.88841 0.84547 1.90548 1.71968 1.30777 1.58956 1.41878 1.04675 1.09554 1.62277 1.19834 0.89258 0.87551 1.50076 0.89591 1.26191 0.97270 1.02056 0.95390 1.69635 1.11745 1.25299 1.48140 0.84828 0.77188 0.76835 0.78914 1.19318 1.19134 1.19510 1.20248 0.91304 0.98298 0.98556 1.20800 0.97677 0.91054 1.04661 1.18984 0.87922 0.88275 1.01764 1.86849 1.19539 1.33461 1.82485 1.23764 0.82355 0.92232 1.00448 0.88364 1.21904 0.95855 1.01496 1.00686 1.22049 0.89232 0.96687 1.05465 0.85132 0.92417 0.92327 0.83994 0.76820 0.90670 0.84791 0.91845 0.91009 0.87495 0.86395 0.87231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.52 16 2 O -0.32 -10.45 10.50 -93.55 -0.98 -11.43 16 3 C 0.10 3.55 6.70 22.62 0.15 3.70 16 4 C -0.16 -5.89 8.51 22.57 0.19 -5.70 16 5 C -0.11 -4.67 5.88 -20.07 -0.12 -4.79 16 6 C 0.47 24.55 7.72 86.68 0.67 25.22 16 7 O -0.63 -37.16 15.93 -4.08 -0.06 -37.22 16 8 N -0.55 -29.54 5.23 -309.92 -1.62 -31.16 16 9 C -0.34 -19.34 9.68 84.09 0.81 -18.53 16 10 H 0.09 5.20 7.15 -2.91 -0.02 5.18 16 11 C -0.01 -0.40 5.50 84.95 0.47 0.07 16 12 N -0.91 -47.79 13.05 21.68 0.28 -47.51 16 13 Si 1.00 41.87 29.55 68.60 2.03 43.90 16 14 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 15 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 16 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 17 C -0.06 -2.40 9.58 22.46 0.22 -2.18 16 18 C -0.14 -4.33 6.25 -19.56 -0.12 -4.45 16 19 C 0.08 2.54 6.98 22.89 0.16 2.70 16 20 O -0.31 -8.98 10.81 -94.55 -1.02 -10.00 16 21 C 0.07 1.29 4.25 31.17 0.13 1.43 16 22 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 23 C -0.14 -1.81 9.59 71.98 0.69 -1.12 16 24 C -0.10 -1.96 6.65 30.74 0.20 -1.75 16 25 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.06 1.46 7.63 -2.39 -0.02 1.44 16 27 H 0.06 1.47 7.66 -2.38 -0.02 1.45 16 28 H 0.14 5.25 4.58 -2.91 -0.01 5.24 16 29 H 0.40 20.05 5.93 -92.70 -0.55 19.51 16 30 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 31 H 0.13 4.98 7.66 -2.91 -0.02 4.96 16 32 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.11 1.87 7.93 -2.38 -0.02 1.85 16 Total: -1.00 -70.81 309.19 3.76 -67.05 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: 0.57 Total: 30.25 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 4.57 Total: -3.88 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -1.34 Total: -78.67 kcal Atomic # 8 Polarization: -56.59 SS G_CDS: -2.07 Total: -58.66 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -70.81 3.76 -67.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749608718.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.549 kcal (2) G-P(sol) polarization free energy of solvation -70.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds