Wall clock time and date at job start Mon Mar 30 2020 01:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47614 * 2 1 4 4 C 1.50697 * 109.47474 * 119.99961 * 2 1 3 5 5 O 1.21294 * 119.99905 * 359.97438 * 4 2 1 6 6 N 1.34778 * 120.00634 * 179.97438 * 4 2 1 7 7 C 1.39914 * 120.00233 * 175.79069 * 6 4 2 8 8 C 1.38959 * 120.03877 * 215.17943 * 7 6 4 9 9 C 1.38151 * 120.05399 * 180.02562 * 8 7 6 10 10 C 1.38182 * 120.12617 * 359.69695 * 9 8 7 11 11 C 1.38849 * 120.08010 * 0.55936 * 10 9 8 12 12 O 1.35851 * 120.02482 * 179.74622 * 11 10 9 13 13 C 1.34966 * 117.99850 * 245.69835 * 12 11 10 14 14 O 1.21642 * 120.00061 * 5.16644 * 13 12 11 15 15 C 1.46127 * 120.00370 * 185.17141 * 13 12 11 16 16 H 1.08002 * 119.99710 * 0.02562 * 15 13 12 17 17 C 1.40145 * 120.00246 * 179.97438 * 15 13 12 18 18 N 1.30634 * 120.00052 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99965 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47118 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46935 * 120.00383 * 19 17 15 22 22 H 1.48500 * 109.46951 * 240.00280 * 19 17 15 23 23 C 1.38692 * 119.94493 * 359.46385 * 11 10 9 24 24 H 1.09000 * 109.46979 * 299.99928 * 1 2 3 25 25 H 1.08993 * 109.47033 * 59.99880 * 1 2 3 26 26 H 1.08995 * 109.46843 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47435 * 239.99844 * 2 1 3 28 28 H 1.09001 * 109.46767 * 300.00279 * 3 2 1 29 29 H 1.09007 * 109.46918 * 59.99321 * 3 2 1 30 30 H 1.08994 * 109.47532 * 180.02562 * 3 2 1 31 31 H 0.97000 * 119.99369 * 355.79281 * 6 4 2 32 32 H 1.08001 * 119.97468 * 0.02562 * 8 7 6 33 33 H 1.07995 * 119.93597 * 179.97438 * 9 8 7 34 34 H 1.08006 * 119.96056 * 180.29839 * 10 9 8 35 35 H 0.96996 * 120.00078 * 179.97438 * 18 17 15 36 36 H 1.08005 * 120.06279 * 180.23157 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.2442 -1.1709 2.0291 6 7 3.3575 -0.8340 1.4435 7 6 3.8245 -1.4149 2.6276 8 6 4.9930 -0.9485 3.2175 9 6 5.4547 -1.5222 4.3864 10 6 4.7531 -2.5567 4.9754 11 6 3.5877 -3.0306 4.3878 12 8 2.9016 -4.0511 4.9651 13 6 2.8301 -5.2230 4.2995 14 8 3.4479 -5.3721 3.2623 15 6 2.0105 -6.3128 4.8247 16 1 1.4616 -6.1804 5.7453 17 6 1.9358 -7.5295 4.1332 18 7 2.5986 -7.6893 3.0189 19 14 0.8886 -8.9229 4.8050 20 1 0.2437 -8.4913 6.0711 21 1 -0.1577 -9.2784 3.8130 22 1 1.7471 -10.1065 5.0647 23 6 3.1216 -2.4572 3.2141 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4424 -0.0005 31 1 3.9873 -0.5202 0.7759 32 1 5.5407 -0.1368 2.7618 33 1 6.3632 -1.1585 4.8430 34 1 5.1139 -3.0001 5.8918 35 1 2.5472 -8.5315 2.5405 36 1 2.2133 -2.8218 2.7574 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772989231.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:23 Heat of formation + Delta-G solvation = -127.997250 kcal Electronic energy + Delta-G solvation = -21071.563656 eV Core-core repulsion = 17712.561843 eV Total energy + Delta-G solvation = -3359.001813 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.90298 -41.03765 -39.11785 -37.10482 -35.76942 -35.40629 -34.89155 -31.37684 -30.59487 -28.93252 -28.00475 -25.38434 -24.70454 -23.10695 -22.22035 -21.00133 -19.65096 -18.92661 -18.30493 -17.80778 -17.25058 -16.98656 -16.76876 -16.49814 -15.99193 -15.40548 -15.11377 -14.68299 -14.64312 -14.37553 -13.88006 -13.62663 -13.43691 -13.25327 -13.07597 -12.93808 -12.89623 -12.79502 -12.54684 -12.13182 -12.05975 -12.02783 -11.81704 -11.35737 -11.11507 -10.80313 -10.54073 -9.66867 -9.18222 -8.63576 -7.28273 0.14854 0.32472 1.31634 1.33458 1.50445 1.55923 1.97005 2.06365 2.10406 2.50345 3.07547 3.17680 3.53018 3.91030 3.95654 3.99341 4.12850 4.21559 4.36066 4.44977 4.58656 4.67295 4.73582 4.84203 4.90168 5.02442 5.05830 5.20232 5.25621 5.30212 5.31006 5.36050 5.52969 5.62092 5.86426 6.19225 6.36254 6.46114 6.52061 7.10266 7.99287 8.33764 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.018252 B = 0.004893 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.669049 B = 5720.578190 C = 6829.317878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.103 4.103 3 C -0.138 4.138 4 C 0.499 3.501 5 O -0.572 6.572 6 N -0.656 5.656 7 C 0.148 3.852 8 C -0.145 4.145 9 C -0.072 4.072 10 C -0.163 4.163 11 C 0.091 3.909 12 O -0.345 6.345 13 C 0.461 3.539 14 O -0.586 6.586 15 C -0.535 4.535 16 H 0.096 0.904 17 C 0.027 3.973 18 N -0.804 5.804 19 Si 1.021 2.979 20 H -0.247 1.247 21 H -0.259 1.259 22 H -0.253 1.253 23 C -0.165 4.165 24 H 0.047 0.953 25 H 0.097 0.903 26 H 0.036 0.964 27 H 0.125 0.875 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.431 0.569 32 H 0.180 0.820 33 H 0.182 0.818 34 H 0.135 0.865 35 H 0.288 0.712 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.240 16.667 -6.378 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.124 4.124 3 C -0.195 4.195 4 C 0.289 3.711 5 O -0.449 6.449 6 N -0.303 5.303 7 C 0.054 3.946 8 C -0.164 4.164 9 C -0.090 4.090 10 C -0.182 4.182 11 C 0.048 3.952 12 O -0.264 6.264 13 C 0.323 3.677 14 O -0.482 6.482 15 C -0.566 4.566 16 H 0.114 0.886 17 C -0.190 4.190 18 N -0.432 5.432 19 Si 0.837 3.163 20 H -0.170 1.170 21 H -0.183 1.183 22 H -0.177 1.177 23 C -0.186 4.186 24 H 0.066 0.934 25 H 0.116 0.884 26 H 0.055 0.945 27 H 0.142 0.858 28 H 0.114 0.886 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.272 0.728 32 H 0.197 0.803 33 H 0.199 0.801 34 H 0.153 0.847 35 H 0.099 0.901 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.921 16.277 -6.340 17.710 hybrid contribution -0.394 -0.884 -0.053 0.969 sum 2.527 15.393 -6.392 16.858 Atomic orbital electron populations 1.21658 0.92912 1.01713 1.03002 1.21415 0.98077 0.98850 0.94101 1.21814 1.02392 0.91510 1.03767 1.22038 0.81571 0.78680 0.88855 1.90762 1.56550 1.48803 1.48828 1.43404 1.08149 1.59877 1.18917 1.17692 0.95578 0.92276 0.89100 1.21334 0.96047 1.02279 0.96772 1.21273 0.99718 0.93562 0.94447 1.21390 0.92787 1.01291 1.02776 1.19124 0.92981 0.89012 0.94040 1.84584 1.68836 1.21565 1.51409 1.22006 0.82330 0.80175 0.83161 1.90622 1.49394 1.81505 1.26724 1.21064 1.28457 0.95632 1.11492 0.88598 1.27308 0.96013 1.01926 0.93768 1.70120 1.33114 1.26395 1.13595 0.84643 0.77332 0.74831 0.79488 1.16951 1.18333 1.17724 1.21244 1.01718 0.97916 0.97755 0.93412 0.88418 0.94479 0.85751 0.88622 0.93096 0.90146 0.72828 0.80263 0.80115 0.84716 0.90123 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.48 71.98 0.61 -2.30 16 2 C -0.10 -2.00 3.25 -11.54 -0.04 -2.04 16 3 C -0.14 -1.63 9.09 71.98 0.65 -0.97 16 4 C 0.50 15.71 6.99 87.66 0.61 16.33 16 5 O -0.57 -25.39 13.44 -3.07 -0.04 -25.43 16 6 N -0.66 -18.21 5.20 -303.55 -1.58 -19.79 16 7 C 0.15 5.38 6.29 38.14 0.24 5.62 16 8 C -0.14 -3.90 9.96 22.42 0.22 -3.68 16 9 C -0.07 -2.05 10.03 22.24 0.22 -1.83 16 10 C -0.16 -6.54 9.99 22.40 0.22 -6.31 16 11 C 0.09 4.72 5.43 22.52 0.12 4.85 16 12 O -0.35 -20.80 9.99 -1.72 -0.02 -20.82 16 13 C 0.46 30.57 7.68 69.87 0.54 31.11 16 14 O -0.59 -41.77 14.46 19.37 0.28 -41.49 16 15 C -0.53 -33.25 9.66 24.78 0.24 -33.01 16 16 H 0.10 5.52 7.85 -2.91 -0.02 5.50 16 17 C 0.03 1.52 5.50 85.33 0.47 1.99 16 18 N -0.80 -49.31 11.82 21.85 0.26 -49.06 16 19 Si 1.02 41.26 29.56 68.60 2.03 43.29 16 20 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 21 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 22 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 23 C -0.17 -8.29 7.86 22.50 0.18 -8.11 16 24 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 25 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.04 0.99 8.10 -2.39 -0.02 0.97 16 27 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.08 0.64 7.67 -2.39 -0.02 0.63 16 31 H 0.43 7.33 8.37 -92.71 -0.78 6.55 16 32 H 0.18 2.79 8.06 -2.91 -0.02 2.77 16 33 H 0.18 3.22 8.06 -2.91 -0.02 3.20 16 34 H 0.13 4.96 8.06 -2.91 -0.02 4.94 16 35 H 0.29 15.53 8.29 -92.71 -0.77 14.76 16 36 H 0.09 5.33 6.24 -2.91 -0.02 5.31 16 Total: -1.00 -93.48 317.38 5.56 -87.92 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.33 Total: 23.73 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 4.30 Total: 1.63 kcal Atomic # 7 Polarization: -67.52 SS G_CDS: -1.32 Total: -68.84 kcal Atomic # 8 Polarization: -87.96 SS G_CDS: 0.22 Total: -87.74 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -93.48 5.56 -87.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772989231.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.075 kcal (2) G-P(sol) polarization free energy of solvation -93.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds