Wall clock time and date at job start Mon Mar 30 2020 02:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00066 * 2 1 4 4 O 1.42906 * 109.47020 * 135.00024 * 3 2 1 5 5 C 1.35634 * 116.99907 * 180.02562 * 4 3 2 6 6 C 1.39356 * 120.54026 * 359.97438 * 5 4 3 7 7 C 1.38287 * 118.43870 * 179.97438 * 6 5 4 8 8 C 1.38805 * 119.45190 * 359.97438 * 7 6 5 9 9 N 1.31344 * 121.07650 * 0.02562 * 8 7 6 10 10 C 1.32902 * 121.69252 * 359.97438 * 9 8 7 11 11 C 1.47707 * 119.78887 * 180.02562 * 10 9 8 12 12 O 1.21476 * 119.99980 * 179.97438 * 11 10 9 13 13 O 1.34722 * 119.99808 * 359.97438 * 11 10 9 14 14 C 1.45207 * 116.99710 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47012 * 179.97438 * 14 13 11 16 16 C 1.50692 * 109.47238 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00345 * 359.97438 * 16 15 14 18 18 C 1.37884 * 120.00120 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99904 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99898 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47184 * 89.99989 * 20 18 16 22 22 H 1.48503 * 109.46941 * 210.00106 * 20 18 16 23 23 H 1.48500 * 109.47357 * 329.99950 * 20 18 16 24 24 H 1.08000 * 119.99826 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.00047 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.00383 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46985 * 15.00505 * 3 2 1 28 28 H 1.08997 * 109.47577 * 254.99844 * 3 2 1 29 29 H 1.07995 * 120.78382 * 359.95873 * 6 5 4 30 30 H 1.07999 * 120.27315 * 179.97438 * 7 6 5 31 31 H 1.08007 * 119.46140 * 179.72011 * 8 7 6 32 32 H 1.08999 * 109.47220 * 299.99637 * 14 13 11 33 33 H 1.09000 * 109.47054 * 60.00123 * 14 13 11 34 34 H 1.09005 * 109.47101 * 300.00505 * 15 14 13 35 35 H 1.09005 * 109.46864 * 59.99841 * 15 14 13 36 36 H 0.97000 * 119.99886 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9076 2.3431 1.0788 6 6 3.6654 3.4752 0.3030 7 6 4.4881 4.5745 0.4673 8 6 5.5221 4.5210 1.3918 9 7 5.7320 3.4432 2.1126 10 6 4.9687 2.3621 1.9906 11 6 5.2423 1.1730 2.8230 12 8 4.5468 0.1829 2.7150 13 8 6.2633 1.1864 3.7020 14 6 6.4731 -0.0170 4.4870 15 6 7.6678 0.1854 5.4211 16 6 7.8861 -1.0636 6.2354 17 1 7.2372 -1.9165 6.1006 18 6 8.9134 -1.1174 7.1535 19 7 9.7026 -0.0784 7.3188 20 14 9.1834 -2.6655 8.1633 21 1 10.1130 -3.5714 7.4418 22 1 9.7680 -2.3024 9.4793 23 1 7.8840 -3.3535 8.3718 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3855 2.1161 0.2661 28 1 2.4755 1.4869 -0.9926 29 1 2.8545 3.4935 -0.4100 30 1 4.3274 5.4673 -0.1188 31 1 6.1675 5.3779 1.5171 32 1 5.5810 -0.2257 5.0775 33 1 6.6719 -0.8558 3.8200 34 1 8.5598 0.3941 4.8303 35 1 7.4695 1.0244 6.0881 36 1 10.4251 -0.1161 7.9650 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775112177.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:27 Heat of formation + Delta-G solvation = -88.922665 kcal Electronic energy + Delta-G solvation = -20351.350900 eV Core-core repulsion = 16994.043488 eV Total energy + Delta-G solvation = -3357.307412 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.12644 -40.85133 -39.46202 -37.63386 -35.46106 -35.10429 -33.56575 -32.34821 -31.66853 -27.80579 -27.40016 -25.90109 -24.00929 -23.17134 -22.34463 -20.91570 -19.56807 -19.14826 -18.39057 -18.21058 -17.69004 -17.40253 -17.04938 -16.57470 -16.03624 -15.95060 -15.34478 -15.08604 -14.58210 -14.49086 -14.36799 -14.12845 -13.73154 -13.19461 -13.14403 -12.96857 -12.61651 -12.59970 -12.57946 -12.03805 -11.91813 -11.60494 -11.49145 -11.43053 -10.91051 -10.75295 -10.62508 -10.44727 -9.64859 -8.27381 -6.41675 -0.54977 0.17561 1.06485 1.37099 1.39516 1.43090 1.53373 1.63524 2.16254 2.39461 2.70089 3.06223 3.18964 3.49537 3.61606 3.88094 3.95946 4.05390 4.05736 4.18073 4.21120 4.26928 4.41806 4.48346 4.65476 4.80978 4.91390 4.95873 5.20608 5.36531 5.43381 5.46506 5.58772 5.64364 5.71621 6.04584 6.13618 6.54866 6.71386 6.90000 7.27887 8.85735 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.020893 B = 0.003584 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.843247 B = 7811.413634 C = 9100.013624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.185 4.185 3 C 0.072 3.928 4 O -0.305 6.305 5 C 0.140 3.860 6 C -0.167 4.167 7 C -0.069 4.069 8 C 0.052 3.948 9 N -0.437 5.437 10 C 0.010 3.990 11 C 0.505 3.495 12 O -0.517 6.517 13 O -0.351 6.351 14 C 0.089 3.911 15 C 0.034 3.966 16 C -0.552 4.552 17 H 0.066 0.934 18 C 0.004 3.996 19 N -0.928 5.928 20 Si 0.979 3.021 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.263 1.263 24 H 0.120 0.880 25 H 0.116 0.884 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.192 0.808 30 H 0.202 0.798 31 H 0.198 0.802 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.004 0.996 35 H 0.004 0.996 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.177 10.701 -20.329 29.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.203 4.203 3 C -0.002 4.002 4 O -0.216 6.216 5 C 0.089 3.911 6 C -0.193 4.193 7 C -0.088 4.088 8 C -0.112 4.112 9 N -0.149 5.149 10 C -0.123 4.123 11 C 0.350 3.650 12 O -0.406 6.406 13 O -0.267 6.267 14 C 0.016 3.984 15 C -0.003 4.003 16 C -0.589 4.589 17 H 0.084 0.916 18 C -0.194 4.194 19 N -0.567 5.567 20 Si 0.802 3.198 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.187 1.187 24 H 0.138 0.862 25 H 0.135 0.865 26 H 0.120 0.880 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.209 0.791 30 H 0.219 0.781 31 H 0.215 0.785 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.022 0.978 35 H 0.023 0.977 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.558 10.142 -19.507 28.137 hybrid contribution -0.129 -0.909 0.188 0.937 sum -17.686 9.233 -19.319 27.772 Atomic orbital electron populations 1.24109 0.94589 1.03990 0.96231 1.22664 0.96478 0.97488 1.03655 1.22341 0.87356 0.98127 0.92344 1.86403 1.42063 1.34343 1.58761 1.20097 0.89435 0.88434 0.93128 1.22230 1.04087 0.91473 1.01534 1.22901 0.91233 0.99534 0.95145 1.23571 0.98702 0.95629 0.93262 1.67665 1.24850 0.99492 1.22920 1.19320 0.98133 0.93614 1.01217 1.21296 0.78006 0.87286 0.78433 1.90809 1.48455 1.34433 1.66914 1.86683 1.48257 1.42827 1.48927 1.23223 0.99685 0.83430 0.92097 1.18953 0.91318 0.97207 0.92823 1.21367 1.15542 0.99976 1.22050 0.91599 1.26037 0.94970 1.00436 0.98002 1.70117 1.18641 1.31887 1.36012 0.85250 0.78856 0.78153 0.77573 1.19380 1.20166 1.18665 0.86170 0.86539 0.87953 0.88626 0.88463 0.79115 0.78107 0.78535 0.92236 0.92220 0.97754 0.97740 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 14.31 67.79 0.97 -0.89 16 2 C -0.18 -3.22 9.89 25.65 0.25 -2.97 16 3 C 0.07 1.15 5.17 71.24 0.37 1.52 16 4 O -0.30 -8.54 8.18 -68.48 -0.56 -9.11 16 5 C 0.14 3.71 6.71 22.95 0.15 3.86 16 6 C -0.17 -2.37 9.13 22.55 0.21 -2.17 16 7 C -0.07 -0.76 10.10 22.42 0.23 -0.53 16 8 C 0.05 0.99 11.17 84.90 0.95 1.94 16 9 N -0.44 -14.13 10.11 -184.67 -1.87 -16.00 16 10 C 0.01 0.37 6.76 41.90 0.28 0.65 16 11 C 0.51 22.46 7.94 70.32 0.56 23.02 16 12 O -0.52 -24.29 14.93 26.93 0.40 -23.89 16 13 O -0.35 -17.35 10.04 -56.32 -0.57 -17.91 16 14 C 0.09 4.56 5.41 71.98 0.39 4.95 16 15 C 0.03 2.01 5.35 29.85 0.16 2.17 16 16 C -0.55 -33.25 9.11 25.60 0.23 -33.01 16 17 H 0.07 3.79 7.74 -2.91 -0.02 3.76 16 18 C 0.00 0.26 5.46 84.66 0.46 0.72 16 19 N -0.93 -58.04 13.29 21.45 0.28 -57.75 16 20 Si 0.98 45.38 29.54 68.60 2.03 47.41 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 24 H 0.12 0.93 7.90 -2.91 -0.02 0.91 16 25 H 0.12 1.20 8.06 -2.91 -0.02 1.18 16 26 H 0.10 2.15 8.06 -2.91 -0.02 2.13 16 27 H 0.10 0.98 7.42 -2.39 -0.02 0.96 16 28 H 0.10 1.03 7.70 -2.39 -0.02 1.02 16 29 H 0.19 0.97 6.46 -2.91 -0.02 0.95 16 30 H 0.20 0.03 8.06 -2.91 -0.02 0.01 16 31 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 32 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.00 0.25 8.14 -2.38 -0.02 0.24 16 35 H 0.00 0.26 8.14 -2.38 -0.02 0.24 16 36 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -83.36 324.24 6.01 -77.35 By element: Atomic # 1 Polarization: -0.45 SS G_CDS: 1.08 Total: 0.63 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 5.21 Total: -0.73 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -1.58 Total: -73.75 kcal Atomic # 8 Polarization: -50.18 SS G_CDS: -0.72 Total: -50.91 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -83.36 6.01 -77.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775112177.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.576 kcal (2) G-P(sol) polarization free energy of solvation -83.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds