Wall clock time and date at job start Mon Mar 30 2020 02:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50692 * 109.47210 * 2 1 4 4 O 1.20831 * 119.99969 * 0.02562 * 3 2 1 5 5 O 1.34228 * 120.00341 * 180.02562 * 3 2 1 6 6 C 1.45200 * 117.00520 * 185.08467 * 5 3 2 7 7 C 1.50697 * 109.47537 * 184.90887 * 6 5 3 8 8 O 1.21277 * 119.99690 * 355.00398 * 7 6 5 9 9 N 1.34769 * 120.00176 * 174.99618 * 7 6 5 10 10 C 1.37139 * 120.00008 * 3.38353 * 9 7 6 11 11 H 1.08003 * 120.00294 * 305.54779 * 10 9 7 12 12 C 1.38896 * 120.00327 * 125.54590 * 10 9 7 13 13 N 1.31414 * 120.00312 * 181.40619 * 12 10 9 14 14 Si 1.86800 * 119.99589 * 1.40450 * 12 10 9 15 15 H 1.48499 * 109.47248 * 95.25658 * 14 12 10 16 16 H 1.48503 * 109.47228 * 215.25511 * 14 12 10 17 17 H 1.48503 * 109.47494 * 335.25822 * 14 12 10 18 18 C 1.39785 * 120.00278 * 183.37661 * 9 7 6 19 19 C 1.38958 * 120.08276 * 171.68140 * 18 9 7 20 20 C 1.38083 * 119.92779 * 179.97438 * 19 18 9 21 21 C 1.38310 * 120.07222 * 359.97438 * 20 19 18 22 22 C 1.38303 * 120.16063 * 0.02562 * 21 20 19 23 23 C 1.38080 * 120.07621 * 359.97438 * 22 21 20 24 24 H 1.08996 * 109.47038 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46643 * 299.99483 * 1 2 3 26 26 H 1.08998 * 109.47258 * 59.99724 * 1 2 3 27 27 H 1.09004 * 109.47004 * 240.00291 * 2 1 3 28 28 H 1.08998 * 109.47258 * 120.00276 * 2 1 3 29 29 H 1.08998 * 109.46937 * 64.90809 * 6 5 3 30 30 H 1.09003 * 109.46944 * 304.91016 * 6 5 3 31 31 H 0.96997 * 120.00195 * 179.97438 * 13 12 10 32 32 H 1.08002 * 120.03940 * 359.70778 * 19 18 9 33 33 H 1.07991 * 119.96600 * 179.97438 * 20 19 18 34 34 H 1.08001 * 119.91556 * 179.97438 * 21 20 19 35 35 H 1.08001 * 119.96251 * 180.02562 * 22 21 20 36 36 H 1.08002 * 120.04211 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2472 2.3391 0.0005 5 8 3.3520 1.6661 -0.0005 6 6 3.7648 3.0534 0.1142 7 6 5.2625 3.1452 -0.0248 8 8 5.9264 2.1341 -0.1121 9 7 5.8641 4.3508 -0.0523 10 6 5.1218 5.4916 0.1158 11 1 4.2679 5.6787 -0.5186 12 6 5.4679 6.4065 1.1018 13 7 4.7403 7.4861 1.2812 14 14 6.9676 6.1023 2.1731 15 1 8.1368 6.8188 1.6031 16 1 6.7038 6.6002 3.5471 17 1 7.2548 4.6461 2.2209 18 6 7.2449 4.4386 -0.2520 19 6 7.8422 5.6770 -0.4533 20 6 9.2064 5.7601 -0.6497 21 6 9.9784 4.6124 -0.6458 22 6 9.3873 3.3782 -0.4458 23 6 8.0237 3.2877 -0.2487 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.4657 3.4421 1.0876 30 1 3.2902 3.6399 -0.6726 31 1 4.9819 8.1248 1.9701 32 1 7.2395 6.5732 -0.4604 33 1 9.6712 6.7222 -0.8066 34 1 11.0451 4.6803 -0.8001 35 1 9.9932 2.4841 -0.4429 36 1 7.5626 2.3235 -0.0930 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798120903.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:59 Heat of formation + Delta-G solvation = -88.508562 kcal Electronic energy + Delta-G solvation = -21473.098874 eV Core-core repulsion = 18115.809419 eV Total energy + Delta-G solvation = -3357.289455 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.08140 -41.37620 -39.27883 -37.62436 -37.01468 -34.26930 -33.91987 -31.78895 -31.57073 -29.28121 -27.25715 -25.74736 -23.70954 -23.06279 -21.60945 -21.40820 -20.05736 -18.95378 -18.08967 -17.91440 -17.65096 -17.45267 -16.96416 -16.44456 -15.88465 -15.41843 -15.21830 -15.00387 -14.74096 -14.41328 -14.28309 -14.15791 -13.64347 -13.64060 -13.31492 -13.21018 -12.68690 -12.63876 -12.49934 -12.10774 -12.09407 -11.91776 -11.88628 -11.60601 -11.33024 -10.94776 -10.25946 -9.68428 -8.93082 -8.59225 -6.62719 0.34821 0.50937 1.12276 1.21797 1.27614 1.31882 1.38272 1.62019 2.09251 2.51599 2.66763 3.04129 3.57671 3.65214 4.04738 4.09256 4.15634 4.17368 4.21705 4.24307 4.44819 4.62451 4.64550 4.74633 4.80810 4.96403 5.00929 5.19442 5.28462 5.38642 5.46346 5.53341 5.62719 5.69682 5.88149 5.93918 6.32461 6.63366 6.72881 7.05464 7.35187 8.42402 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.021279 B = 0.005686 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.561288 B = 4923.545510 C = 5889.377805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C 0.450 3.550 4 O -0.542 6.542 5 O -0.348 6.348 6 C 0.080 3.920 7 C 0.496 3.504 8 O -0.552 6.552 9 N -0.414 5.414 10 C -0.374 4.374 11 H 0.090 0.910 12 C 0.058 3.942 13 N -0.884 5.884 14 Si 0.920 3.080 15 H -0.234 1.234 16 H -0.289 1.289 17 H -0.276 1.276 18 C 0.128 3.872 19 C -0.180 4.180 20 C -0.105 4.105 21 C -0.154 4.154 22 C -0.103 4.103 23 C -0.203 4.203 24 H 0.101 0.899 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.286 0.714 32 H 0.120 0.880 33 H 0.145 0.855 34 H 0.156 0.844 35 H 0.150 0.850 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.756 -10.681 -1.483 10.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C 0.295 3.705 4 O -0.431 6.431 5 O -0.264 6.264 6 C 0.003 3.997 7 C 0.287 3.713 8 O -0.434 6.434 9 N -0.126 5.126 10 C -0.500 4.500 11 H 0.107 0.893 12 C -0.150 4.150 13 N -0.518 5.518 14 Si 0.746 3.254 15 H -0.158 1.158 16 H -0.216 1.216 17 H -0.201 1.201 18 C 0.033 3.967 19 C -0.200 4.200 20 C -0.123 4.123 21 C -0.172 4.172 22 C -0.121 4.121 23 C -0.222 4.222 24 H 0.120 0.880 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.138 0.862 33 H 0.163 0.837 34 H 0.174 0.826 35 H 0.167 0.833 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.724 -10.680 -1.441 10.914 hybrid contribution 0.082 0.941 0.521 1.079 sum 1.806 -9.739 -0.920 9.948 Atomic orbital electron populations 1.21668 0.91664 1.03888 1.02462 1.21586 0.98130 0.86621 1.08093 1.25102 0.79314 0.95029 0.71078 1.90671 1.57114 1.48485 1.46853 1.86502 1.27192 1.29269 1.83436 1.22287 0.91971 0.80490 1.04957 1.20583 0.89991 0.82813 0.77923 1.90242 1.64854 1.36222 1.52126 1.41301 1.04690 1.05973 1.60610 1.18882 1.13171 0.98809 1.19187 0.89289 1.25902 0.98740 0.94484 0.95896 1.69695 1.38691 1.10670 1.32787 0.86241 0.81535 0.79636 0.78037 1.15758 1.21622 1.20098 1.18721 0.84232 0.95240 0.98522 1.21047 0.96599 0.96553 1.05822 1.21262 0.92115 1.00200 0.98732 1.21443 1.01113 0.91766 1.02921 1.21455 0.93581 0.99050 0.98023 1.22777 0.95249 1.00123 1.04085 0.87986 0.92999 0.92967 0.85301 0.85256 0.88041 0.88579 0.90344 0.86217 0.83708 0.82625 0.83251 0.81777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.20 71.98 0.66 -1.71 16 2 C -0.11 -2.02 6.53 29.85 0.19 -1.83 16 3 C 0.45 14.20 7.95 71.23 0.57 14.77 16 4 O -0.54 -20.56 15.64 21.95 0.34 -20.22 16 5 O -0.35 -12.93 9.76 -45.06 -0.44 -13.37 16 6 C 0.08 3.34 4.87 71.24 0.35 3.69 16 7 C 0.50 23.36 7.65 87.66 0.67 24.03 16 8 O -0.55 -26.53 12.92 15.73 0.20 -26.32 16 9 N -0.41 -20.51 2.30 -458.91 -1.06 -21.56 16 10 C -0.37 -19.64 8.01 84.02 0.67 -18.97 16 11 H 0.09 4.96 7.70 -2.91 -0.02 4.94 16 12 C 0.06 3.04 4.61 84.91 0.39 3.43 16 13 N -0.88 -48.23 13.96 21.65 0.30 -47.93 16 14 Si 0.92 43.01 23.84 68.60 1.64 44.65 16 15 H -0.23 -10.10 6.14 99.48 0.61 -9.49 16 16 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 17 H -0.28 -13.71 6.48 99.48 0.64 -13.06 16 18 C 0.13 5.97 4.12 38.22 0.16 6.13 16 19 C -0.18 -7.82 5.57 22.41 0.12 -7.70 16 20 C -0.10 -3.66 9.76 22.25 0.22 -3.45 16 21 C -0.15 -4.72 10.04 22.30 0.22 -4.50 16 22 C -0.10 -3.48 10.04 22.25 0.22 -3.25 16 23 C -0.20 -8.68 9.03 22.41 0.20 -8.47 16 24 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 26 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 27 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.10 4.29 8.14 -2.39 -0.02 4.28 16 30 H 0.10 4.07 7.57 -2.39 -0.02 4.06 16 31 H 0.29 14.51 8.31 -92.71 -0.77 13.74 16 32 H 0.12 5.62 5.70 -2.91 -0.02 5.60 16 33 H 0.15 4.12 8.06 -2.92 -0.02 4.10 16 34 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 35 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 36 H 0.17 7.46 4.58 -58.42 -0.27 7.19 16 Total: -1.00 -66.09 302.35 6.32 -59.77 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.68 Total: 22.82 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 4.66 Total: 2.17 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: -0.76 Total: -69.49 kcal Atomic # 8 Polarization: -60.02 SS G_CDS: 0.11 Total: -59.91 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.64 Total: 44.65 kcal Total: -66.09 6.32 -59.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798120903.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.739 kcal (2) G-P(sol) polarization free energy of solvation -66.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds