Wall clock time and date at job start Mon Mar 30 2020 01:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 120.00042 * 2 1 4 4 N 1.46504 * 109.47382 * 124.99843 * 3 2 1 5 5 C 1.46495 * 119.99986 * 274.64630 * 4 3 2 6 6 C 1.50697 * 109.46931 * 269.99785 * 5 4 3 7 7 H 1.07994 * 120.00656 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99641 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00449 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99715 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47514 * 90.00139 * 10 8 6 12 12 H 1.48509 * 109.47125 * 209.99773 * 10 8 6 13 13 H 1.48495 * 109.47171 * 329.99602 * 10 8 6 14 14 C 1.34780 * 120.00059 * 94.64205 * 4 3 2 15 15 O 1.21592 * 119.99811 * 4.97446 * 14 4 3 16 16 C 1.47544 * 120.00260 * 184.97523 * 14 4 3 17 17 C 1.39804 * 120.16629 * 303.57959 * 16 14 4 18 18 C 1.37744 * 120.00205 * 180.22697 * 17 16 14 19 19 C 1.38541 * 120.34597 * 359.79339 * 18 17 16 20 20 C 1.38429 * 120.33281 * 359.97163 * 19 18 17 21 21 O 1.36002 * 120.00246 * 180.02562 * 20 19 18 22 22 C 1.39184 * 119.99042 * 0.02562 * 20 19 18 23 23 O 1.35740 * 120.16460 * 179.97438 * 22 20 19 24 24 H 1.07999 * 119.99799 * 180.02562 * 1 2 3 25 25 H 1.07997 * 119.99700 * 0.02562 * 1 2 3 26 26 H 1.08009 * 120.00012 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47121 * 5.00165 * 3 2 1 28 28 H 1.08998 * 109.46862 * 244.99525 * 3 2 1 29 29 H 1.08997 * 109.47085 * 30.00073 * 5 4 3 30 30 H 1.09004 * 109.46980 * 149.99739 * 5 4 3 31 31 H 0.97003 * 120.00792 * 179.97438 * 9 8 6 32 32 H 1.07999 * 119.99755 * 0.02562 * 17 16 14 33 33 H 1.08002 * 119.82606 * 179.76585 * 18 17 16 34 34 H 1.07995 * 119.83040 * 179.97438 * 19 18 17 35 35 H 0.96695 * 114.00313 * 269.97934 * 21 20 19 36 36 H 0.96703 * 113.99987 * 90.00463 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5304 1.7696 2.4505 6 6 2.7230 3.2584 2.5820 7 1 3.1484 3.8222 1.7651 8 6 2.3570 3.9006 3.7459 9 7 1.8394 3.2141 4.7410 10 14 2.5951 5.7462 3.9087 11 1 1.3756 6.4467 3.4320 12 1 2.8386 6.0902 5.3328 13 1 3.7603 6.1690 3.0911 14 6 4.2760 0.9540 0.9589 15 8 4.6838 0.6774 -0.1527 16 6 5.1846 0.8757 2.1187 17 6 5.3848 1.9957 2.9311 18 6 6.2375 1.9202 4.0103 19 6 6.8970 0.7368 4.2998 20 6 6.7054 -0.3822 3.5077 21 8 7.3558 -1.5407 3.7984 22 6 5.8469 -0.3215 2.4138 23 8 5.6568 -1.4165 1.6344 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5399 0.9353 -0.0004 26 1 1.8501 -0.9354 0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6214 1.4025 -0.9313 29 1 1.4733 1.5286 2.5626 30 1 3.1035 1.2592 3.2247 31 1 1.5823 3.6658 5.5600 32 1 4.8735 2.9211 2.7106 33 1 6.3930 2.7883 4.6338 34 1 7.5639 0.6870 5.1477 35 1 8.2172 -1.6269 3.3675 36 1 4.9283 -1.9831 1.9231 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816803120.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:31 Heat of formation + Delta-G solvation = -89.868678 kcal Electronic energy + Delta-G solvation = -21861.486181 eV Core-core repulsion = 18504.137746 eV Total energy + Delta-G solvation = -3357.348434 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.63852 -40.15870 -37.92715 -37.40941 -37.08116 -35.15713 -33.92205 -31.59253 -30.20086 -29.36048 -27.34860 -25.15162 -24.11606 -23.44198 -21.32027 -20.51600 -19.30321 -19.18442 -18.43720 -17.75250 -17.65288 -16.97175 -16.49884 -16.37766 -16.08219 -15.81250 -15.43296 -14.95063 -14.46471 -14.26439 -14.12818 -13.60701 -13.47213 -13.20498 -12.96726 -12.95007 -12.75751 -12.55103 -12.28107 -12.23907 -12.02413 -11.67806 -11.51506 -10.82653 -10.59611 -10.30957 -9.81811 -9.55049 -9.49333 -8.18877 -6.32182 -0.03395 0.21252 1.24862 1.42887 1.46715 1.54706 1.69003 2.31639 2.44385 2.59110 3.07179 3.11930 3.33934 3.63950 4.03902 4.11602 4.17643 4.26730 4.45623 4.50921 4.71481 4.77827 4.82289 4.89214 5.01336 5.19810 5.22346 5.35060 5.50346 5.58958 5.65074 5.72669 5.76072 5.89723 6.05347 6.47116 6.56929 6.78092 6.85418 7.20489 7.38117 8.86899 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.012253 B = 0.008569 C = 0.005661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.656038 B = 3266.887381 C = 4945.298536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.182 4.182 3 C 0.139 3.861 4 N -0.588 5.588 5 C 0.256 3.744 6 C -0.543 4.543 7 H 0.055 0.945 8 C 0.033 3.967 9 N -0.911 5.911 10 Si 0.949 3.051 11 H -0.279 1.279 12 H -0.279 1.279 13 H -0.267 1.267 14 C 0.561 3.439 15 O -0.584 6.584 16 C -0.157 4.157 17 C -0.072 4.072 18 C -0.120 4.120 19 C -0.104 4.104 20 C 0.067 3.933 21 O -0.493 6.493 22 C 0.106 3.894 23 O -0.493 6.493 24 H 0.120 0.880 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.019 0.981 30 H 0.026 0.974 31 H 0.269 0.731 32 H 0.143 0.857 33 H 0.153 0.847 34 H 0.166 0.834 35 H 0.408 0.592 36 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.224 -4.913 -0.345 7.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.201 4.201 3 C 0.017 3.983 4 N -0.317 5.317 5 C 0.135 3.865 6 C -0.581 4.581 7 H 0.073 0.927 8 C -0.168 4.168 9 N -0.549 5.549 10 Si 0.774 3.226 11 H -0.204 1.204 12 H -0.204 1.204 13 H -0.191 1.191 14 C 0.349 3.651 15 O -0.466 6.466 16 C -0.160 4.160 17 C -0.091 4.091 18 C -0.138 4.138 19 C -0.123 4.123 20 C 0.022 3.978 21 O -0.305 6.305 22 C 0.060 3.940 23 O -0.304 6.304 24 H 0.138 0.862 25 H 0.122 0.878 26 H 0.119 0.881 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.037 0.963 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.161 0.839 33 H 0.170 0.830 34 H 0.184 0.816 35 H 0.266 0.734 36 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 5.308 -4.936 -0.711 7.283 hybrid contribution -0.262 0.778 0.094 0.827 sum 5.046 -4.158 -0.617 6.567 Atomic orbital electron populations 1.24032 0.94922 1.03146 0.97943 1.23170 0.96809 0.97845 1.02293 1.20552 0.91947 0.96378 0.89468 1.48194 1.08552 1.62521 1.12407 1.19115 0.94726 0.94388 0.78268 1.21501 1.42724 0.93184 1.00677 0.92684 1.25528 0.94241 1.02000 0.95079 1.70009 1.41782 1.37581 1.05552 0.85696 0.78795 0.80537 0.77587 1.20437 1.20432 1.19089 1.18378 0.82309 0.76266 0.88096 1.90670 1.76806 1.52650 1.26461 1.20204 1.01155 0.96308 0.98360 1.21947 0.95183 0.98870 0.93066 1.21264 0.96317 0.99108 0.97112 1.21741 1.00014 0.90556 0.99965 1.18571 0.98299 0.87532 0.93429 1.84754 1.37482 1.35570 1.72726 1.18924 0.97910 0.86651 0.90559 1.84694 1.57062 1.35199 1.53464 0.86224 0.87792 0.88140 0.89762 0.90466 0.96282 0.95559 0.92228 0.83918 0.82977 0.81619 0.73409 0.74197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.43 14.32 67.78 0.97 -3.46 16 2 C -0.18 -5.98 9.84 25.64 0.25 -5.73 16 3 C 0.14 5.29 5.93 85.63 0.51 5.80 16 4 N -0.59 -25.66 2.44 -834.27 -2.04 -27.70 16 5 C 0.26 12.17 4.73 85.63 0.41 12.57 16 6 C -0.54 -26.89 6.56 25.60 0.17 -26.72 16 7 H 0.05 2.78 7.76 -2.91 -0.02 2.76 16 8 C 0.03 1.65 5.46 84.66 0.46 2.12 16 9 N -0.91 -47.88 13.29 21.45 0.28 -47.60 16 10 Si 0.95 39.47 29.54 68.60 2.03 41.50 16 11 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 12 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 13 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 14 C 0.56 25.35 6.77 86.70 0.59 25.94 16 15 O -0.58 -28.85 16.35 -3.24 -0.05 -28.91 16 16 C -0.16 -6.48 4.63 -20.02 -0.09 -6.57 16 17 C -0.07 -2.85 7.79 22.53 0.18 -2.68 16 18 C -0.12 -3.82 10.02 22.23 0.22 -3.60 16 19 C -0.10 -2.89 9.97 22.39 0.22 -2.66 16 20 C 0.07 2.04 6.71 22.54 0.15 2.19 16 21 O -0.49 -12.42 13.29 -79.69 -1.06 -13.47 16 22 C 0.11 3.87 6.72 22.92 0.15 4.02 16 23 O -0.49 -17.20 12.56 -73.02 -0.92 -18.12 16 24 H 0.12 2.65 8.06 -2.91 -0.02 2.62 16 25 H 0.10 2.71 7.84 -2.91 -0.02 2.69 16 26 H 0.10 3.33 8.06 -2.91 -0.02 3.31 16 27 H 0.08 3.12 7.76 -2.39 -0.02 3.10 16 28 H 0.08 3.02 7.23 -2.39 -0.02 3.00 16 29 H 0.02 0.97 8.07 -2.39 -0.02 0.95 16 30 H 0.03 1.33 6.14 -2.38 -0.01 1.32 16 31 H 0.27 13.41 8.31 -92.71 -0.77 12.63 16 32 H 0.14 6.26 5.20 -2.91 -0.02 6.24 16 33 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 34 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 35 H 0.41 6.45 9.06 -74.06 -0.67 5.78 16 36 H 0.40 10.98 9.06 -74.06 -0.67 10.31 16 Total: -1.00 -64.83 316.90 2.22 -62.61 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: -0.22 Total: 30.47 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: 4.19 Total: 1.22 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -1.75 Total: -75.30 kcal Atomic # 8 Polarization: -58.47 SS G_CDS: -2.03 Total: -60.50 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -64.83 2.22 -62.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816803120.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.256 kcal (2) G-P(sol) polarization free energy of solvation -64.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds