Wall clock time and date at job start Mon Mar 30 2020 01:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47355 * 16.55129 * 3 2 1 5 5 O 1.45199 * 109.47003 * 180.02562 * 4 3 2 6 6 C 1.34638 * 117.00029 * 179.97438 * 5 4 3 7 7 O 1.21520 * 119.99580 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00571 * 179.97438 * 6 5 4 9 9 C 1.46493 * 120.00646 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47443 * 270.00265 * 9 8 6 11 11 H 1.08001 * 120.00056 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00480 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99528 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00487 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46990 * 59.99741 * 14 12 10 16 16 H 1.48497 * 109.47011 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47086 * 300.00255 * 14 12 10 18 18 C 1.46505 * 119.99455 * 0.02562 * 8 6 5 19 19 C 1.50703 * 109.47064 * 90.00114 * 18 8 6 20 20 C 1.34515 * 125.79060 * 89.99944 * 19 18 8 21 21 C 1.41380 * 106.83832 * 179.97438 * 20 19 18 22 22 C 1.34506 * 106.84493 * 359.97438 * 21 20 19 23 23 O 1.34306 * 125.78568 * 269.69282 * 19 18 8 24 24 H 4.44651 * 5.63276 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.46805 * 256.54395 * 3 2 1 26 26 H 1.08998 * 109.46564 * 136.54905 * 3 2 1 27 27 H 1.08998 * 109.47541 * 59.99355 * 4 3 2 28 28 H 1.09004 * 109.46741 * 299.99688 * 4 3 2 29 29 H 1.09006 * 109.46911 * 30.00087 * 9 8 6 30 30 H 1.08996 * 109.47170 * 149.99599 * 9 8 6 31 31 H 0.97003 * 119.99687 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.47068 * 210.00083 * 18 8 6 33 33 H 1.09001 * 109.47372 * 330.00170 * 18 8 6 34 34 H 1.07996 * 126.58016 * 0.03378 * 20 19 18 35 35 H 1.08006 * 126.57610 * 179.97438 * 21 20 19 36 36 H 1.08005 * 125.79499 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1567 -1.3818 -0.4109 5 8 4.6087 -1.3812 -0.4103 6 6 5.2206 -2.5310 -0.7514 7 8 4.5591 -3.5081 -1.0422 8 7 6.5665 -2.5981 -0.7715 9 6 7.2322 -3.8493 -1.1421 10 6 7.4606 -4.6818 0.0930 11 1 7.1422 -4.3154 1.0578 12 6 8.0762 -5.9114 -0.0084 13 7 8.4636 -6.3578 -1.1833 14 14 8.3600 -6.9431 1.5227 15 1 7.0553 -7.2468 2.1638 16 1 9.0336 -8.2119 1.1467 17 1 9.2160 -6.1908 2.4749 18 6 7.3638 -1.4199 -0.4215 19 6 7.6373 -1.4206 1.0605 20 6 8.6955 -1.9902 1.6649 21 6 8.5532 -1.7508 3.0510 22 6 7.4171 -1.0488 3.2108 23 8 6.8688 -0.8477 2.0013 24 1 -1.0498 -0.0004 0.0001 25 1 3.0092 0.2400 0.9995 26 1 3.0090 0.7469 -0.7068 27 1 2.7935 -1.6211 -1.4103 28 1 2.7937 -2.1280 0.2959 29 1 6.6044 -4.4015 -1.8415 30 1 8.1899 -3.6259 -1.6120 31 1 8.8963 -7.2230 -1.2547 32 1 8.3081 -1.4456 -0.9653 33 1 6.8149 -0.5170 -0.6892 34 1 9.4998 -2.5265 1.1836 35 1 9.2276 -2.0703 3.8318 36 1 7.0157 -0.7022 4.1516 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858882535.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:26 Heat of formation + Delta-G solvation = -6.946187 kcal Electronic energy + Delta-G solvation = -21393.824861 eV Core-core repulsion = 18040.072215 eV Total energy + Delta-G solvation = -3353.752645 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.02107 -39.79642 -36.74140 -35.13991 -34.38948 -32.67202 -32.42558 -30.32132 -29.99026 -27.47941 -25.38424 -24.02724 -22.67653 -21.20984 -20.39326 -19.76031 -18.23342 -17.50954 -17.00334 -16.45597 -16.29048 -16.02223 -15.34490 -14.74426 -14.56018 -14.07511 -13.90037 -13.64484 -13.26384 -12.79598 -12.39228 -12.29677 -12.17225 -12.00329 -11.83886 -11.40515 -11.23761 -10.97483 -10.63224 -10.42590 -10.41848 -10.23315 -10.05239 -9.78244 -9.61442 -9.33692 -8.44148 -8.12197 -7.82241 -6.05443 -4.08271 2.12948 2.45880 2.69810 2.95585 3.22515 3.33083 3.36826 3.37161 3.41833 3.71249 4.22713 4.44556 4.70157 5.04136 5.08860 5.16367 5.29771 5.37066 5.40386 5.53225 5.72392 5.79738 5.83133 5.84565 5.87816 6.29607 6.49898 6.53989 6.60362 6.98673 7.04480 7.35710 7.40199 7.45408 7.65945 7.91665 8.18377 8.21840 8.90259 9.09352 9.56394 11.02992 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.015290 B = 0.005824 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.792301 B = 4806.141135 C = 5766.222872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.182 4.182 3 C -0.010 4.010 4 C 0.094 3.906 5 O -0.375 6.375 6 C 0.645 3.355 7 O -0.564 6.564 8 N -0.574 5.574 9 C 0.258 3.742 10 C -0.521 4.521 11 H 0.060 0.940 12 C 0.064 3.936 13 N -0.896 5.896 14 Si 0.895 3.105 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.200 3.800 19 C -0.025 4.025 20 C -0.173 4.173 21 C -0.215 4.215 22 C -0.056 4.056 23 O -0.173 6.173 24 H 0.219 0.781 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.264 0.736 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.150 0.850 35 H 0.141 0.859 36 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.185 14.535 3.950 15.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.182 4.182 3 C -0.047 4.047 4 C 0.018 3.982 5 O -0.290 6.290 6 C 0.399 3.601 7 O -0.452 6.452 8 N -0.312 5.312 9 C 0.141 3.859 10 C -0.559 4.559 11 H 0.078 0.922 12 C -0.138 4.138 13 N -0.535 5.535 14 Si 0.723 3.277 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.201 1.201 18 C 0.076 3.924 19 C -0.076 4.076 20 C -0.193 4.193 21 C -0.234 4.234 22 C -0.124 4.124 23 O -0.069 6.069 24 H 0.236 0.764 25 H 0.117 0.883 26 H 0.115 0.885 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.127 0.873 33 H 0.106 0.894 34 H 0.168 0.832 35 H 0.158 0.842 36 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -5.615 14.222 3.670 15.725 hybrid contribution 0.130 -1.013 1.212 1.585 sum -5.485 13.210 4.882 15.113 Atomic orbital electron populations 1.24890 0.95891 0.99884 1.01210 1.22686 0.94018 1.01096 1.00438 1.18489 0.84610 0.97284 1.04295 1.22604 0.76464 0.96595 1.02515 1.86158 1.22253 1.37267 1.83346 1.18085 0.83751 0.80855 0.77455 1.90976 1.64037 1.36175 1.53973 1.47401 1.00956 1.14567 1.68308 1.19470 0.92114 0.77650 0.96689 1.21383 1.38410 1.02368 0.93781 0.92201 1.24868 0.95586 0.97265 0.96100 1.69915 1.40698 1.20057 1.22872 0.86599 0.78435 0.79456 0.83244 1.20329 1.21245 1.20113 1.19793 0.97917 0.89310 0.85367 1.22930 0.91947 1.00749 0.92016 1.21612 1.01153 1.03163 0.93387 1.21798 0.99810 1.04604 0.97234 1.23839 0.96099 1.04950 0.87487 1.84004 1.46485 1.61274 1.15139 0.76431 0.88344 0.88459 0.91136 0.91124 0.93325 0.94020 0.92671 0.87312 0.89391 0.83232 0.84160 0.78949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.06 19.25 29.55 0.57 -1.49 16 2 C -0.18 -2.14 13.34 -37.12 -0.50 -2.63 16 3 C -0.01 -0.12 6.08 -29.52 -0.18 -0.30 16 4 C 0.09 1.41 5.43 37.16 0.20 1.62 16 5 O -0.38 -6.75 9.04 -40.32 -0.36 -7.12 16 6 C 0.65 14.28 8.39 54.05 0.45 14.73 16 7 O -0.56 -14.53 15.71 -19.29 -0.30 -14.83 16 8 N -0.57 -12.33 2.44 -182.25 -0.44 -12.77 16 9 C 0.26 6.52 5.20 -5.20 -0.03 6.49 16 10 C -0.52 -14.39 9.13 -34.44 -0.31 -14.70 16 11 H 0.06 1.72 7.64 -52.49 -0.40 1.31 16 12 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 13 N -0.90 -26.00 13.29 55.43 0.74 -25.26 16 14 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 C 0.20 3.40 5.99 -5.19 -0.03 3.37 16 19 C -0.03 -0.45 6.90 -35.62 -0.25 -0.70 16 20 C -0.17 -3.15 10.39 -39.70 -0.41 -3.56 16 21 C -0.22 -3.48 10.91 -39.71 -0.43 -3.91 16 22 C -0.06 -0.84 12.09 29.41 0.36 -0.48 16 23 O -0.17 -3.02 10.65 5.68 0.06 -2.96 16 24 H 0.22 1.40 7.80 -54.10 -0.42 0.98 16 25 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.05 1.38 7.42 -51.93 -0.39 1.00 16 30 H 0.04 1.03 7.89 -51.93 -0.41 0.62 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.11 1.61 7.89 -51.93 -0.41 1.20 16 33 H 0.09 1.28 7.37 -51.93 -0.38 0.90 16 34 H 0.15 2.75 8.06 -52.49 -0.42 2.33 16 35 H 0.14 1.95 8.06 -52.48 -0.42 1.53 16 36 H 0.19 2.06 8.06 -52.48 -0.42 1.64 16 LS Contribution 331.62 15.07 5.00 5.00 Total: -1.00 -33.62 331.62 -5.50 -39.12 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -4.50 Total: 1.79 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -0.66 Total: 0.13 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.29 Total: -38.03 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.61 Total: -24.91 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.62 -5.50 -39.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858882535.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.175 kcal (2) G-P(sol) polarization free energy of solvation -33.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds