Wall clock time and date at job start Mon Mar 30 2020 01:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47355 * 16.55129 * 3 2 1 5 5 O 1.45199 * 109.47003 * 180.02562 * 4 3 2 6 6 C 1.34638 * 117.00029 * 179.97438 * 5 4 3 7 7 O 1.21520 * 119.99580 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00571 * 179.97438 * 6 5 4 9 9 C 1.46493 * 120.00646 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47443 * 270.00265 * 9 8 6 11 11 H 1.08001 * 120.00056 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00480 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99528 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00487 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46990 * 59.99741 * 14 12 10 16 16 H 1.48497 * 109.47011 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47086 * 300.00255 * 14 12 10 18 18 C 1.46505 * 119.99455 * 0.02562 * 8 6 5 19 19 C 1.50703 * 109.47064 * 90.00114 * 18 8 6 20 20 C 1.34515 * 125.79060 * 89.99944 * 19 18 8 21 21 C 1.41380 * 106.83832 * 179.97438 * 20 19 18 22 22 C 1.34506 * 106.84493 * 359.97438 * 21 20 19 23 23 O 1.34306 * 125.78568 * 269.69282 * 19 18 8 24 24 H 4.44651 * 5.63276 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.46805 * 256.54395 * 3 2 1 26 26 H 1.08998 * 109.46564 * 136.54905 * 3 2 1 27 27 H 1.08998 * 109.47541 * 59.99355 * 4 3 2 28 28 H 1.09004 * 109.46741 * 299.99688 * 4 3 2 29 29 H 1.09006 * 109.46911 * 30.00087 * 9 8 6 30 30 H 1.08996 * 109.47170 * 149.99599 * 9 8 6 31 31 H 0.97003 * 119.99687 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.47068 * 210.00083 * 18 8 6 33 33 H 1.09001 * 109.47372 * 330.00170 * 18 8 6 34 34 H 1.07996 * 126.58016 * 0.03378 * 20 19 18 35 35 H 1.08006 * 126.57610 * 179.97438 * 21 20 19 36 36 H 1.08005 * 125.79499 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1567 -1.3818 -0.4109 5 8 4.6087 -1.3812 -0.4103 6 6 5.2206 -2.5310 -0.7514 7 8 4.5591 -3.5081 -1.0422 8 7 6.5665 -2.5981 -0.7715 9 6 7.2322 -3.8493 -1.1421 10 6 7.4606 -4.6818 0.0930 11 1 7.1422 -4.3154 1.0578 12 6 8.0762 -5.9114 -0.0084 13 7 8.4636 -6.3578 -1.1833 14 14 8.3600 -6.9431 1.5227 15 1 7.0553 -7.2468 2.1638 16 1 9.0336 -8.2119 1.1467 17 1 9.2160 -6.1908 2.4749 18 6 7.3638 -1.4199 -0.4215 19 6 7.6373 -1.4206 1.0605 20 6 8.6955 -1.9902 1.6649 21 6 8.5532 -1.7508 3.0510 22 6 7.4171 -1.0488 3.2108 23 8 6.8688 -0.8477 2.0013 24 1 -1.0498 -0.0004 0.0001 25 1 3.0092 0.2400 0.9995 26 1 3.0090 0.7469 -0.7068 27 1 2.7935 -1.6211 -1.4103 28 1 2.7937 -2.1280 0.2959 29 1 6.6044 -4.4015 -1.8415 30 1 8.1899 -3.6259 -1.6120 31 1 8.8963 -7.2230 -1.2547 32 1 8.3081 -1.4456 -0.9653 33 1 6.8149 -0.5170 -0.6892 34 1 9.4998 -2.5265 1.1836 35 1 9.2276 -2.0703 3.8318 36 1 7.0157 -0.7022 4.1516 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858882535.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:25 Heat of formation + Delta-G solvation = -26.902588 kcal Electronic energy + Delta-G solvation = -21394.690235 eV Core-core repulsion = 18040.072215 eV Total energy + Delta-G solvation = -3354.618020 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.31709 -41.45196 -38.27662 -36.86284 -35.44062 -34.73044 -33.74144 -31.50005 -31.33738 -29.36417 -26.79105 -25.65146 -24.26405 -22.51590 -21.89764 -21.22407 -19.39577 -18.82849 -18.70984 -18.09859 -17.84562 -17.53983 -16.81313 -16.50918 -15.93054 -15.52656 -15.18517 -14.84726 -14.66161 -14.38864 -14.05703 -13.62239 -13.54758 -13.41201 -13.30671 -13.08061 -12.94583 -12.72088 -12.58129 -12.23891 -11.81364 -11.72103 -11.53142 -11.26811 -11.04811 -10.67811 -10.59819 -9.82258 -9.26146 -8.20180 -6.29950 0.76998 1.21955 1.36915 1.39591 1.47128 1.74835 1.85169 1.87254 1.95925 2.30096 2.40489 3.04200 3.12500 3.61181 3.90160 3.93967 4.00341 4.14991 4.27404 4.28519 4.45954 4.57402 4.68434 4.81635 4.93542 5.03940 5.11144 5.14830 5.16796 5.32710 5.37199 5.48897 5.72739 5.77910 6.06492 6.34072 6.48721 6.64248 6.75152 7.28595 7.43257 8.87539 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.015290 B = 0.005824 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.792301 B = 4806.141135 C = 5766.222872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.227 4.227 3 C 0.003 3.997 4 C 0.089 3.911 5 O -0.360 6.360 6 C 0.644 3.356 7 O -0.610 6.610 8 N -0.575 5.575 9 C 0.273 3.727 10 C -0.525 4.525 11 H 0.047 0.953 12 C 0.017 3.983 13 N -0.924 5.924 14 Si 0.953 3.047 15 H -0.285 1.285 16 H -0.278 1.278 17 H -0.262 1.262 18 C 0.197 3.803 19 C -0.044 4.044 20 C -0.190 4.190 21 C -0.234 4.234 22 C -0.042 4.042 23 O -0.184 6.184 24 H 0.252 0.748 25 H 0.106 0.894 26 H 0.114 0.886 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.009 0.991 30 H 0.046 0.954 31 H 0.267 0.733 32 H 0.128 0.872 33 H 0.115 0.885 34 H 0.139 0.861 35 H 0.161 0.839 36 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.678 16.042 5.646 17.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.228 4.228 3 C -0.033 4.033 4 C 0.014 3.986 5 O -0.274 6.274 6 C 0.398 3.602 7 O -0.502 6.502 8 N -0.313 5.313 9 C 0.154 3.846 10 C -0.564 4.564 11 H 0.065 0.935 12 C -0.182 4.182 13 N -0.564 5.564 14 Si 0.778 3.222 15 H -0.211 1.211 16 H -0.203 1.203 17 H -0.187 1.187 18 C 0.074 3.926 19 C -0.095 4.095 20 C -0.210 4.210 21 C -0.253 4.253 22 C -0.109 4.109 23 O -0.080 6.080 24 H 0.268 0.732 25 H 0.125 0.875 26 H 0.133 0.867 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.028 0.972 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.146 0.854 33 H 0.133 0.867 34 H 0.157 0.843 35 H 0.178 0.822 36 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -6.095 15.787 5.378 17.757 hybrid contribution 0.195 -1.416 0.717 1.599 sum -5.901 14.371 6.095 16.688 Atomic orbital electron populations 1.25782 0.96799 0.97710 0.99377 1.22932 0.94589 1.03028 1.02207 1.18371 0.84887 0.94928 1.05112 1.22882 0.74606 0.98909 1.02157 1.86167 1.23923 1.34790 1.82516 1.18225 0.83890 0.81231 0.76849 1.90937 1.65175 1.38076 1.55971 1.47275 1.01241 1.14764 1.68012 1.19010 0.91525 0.78895 0.95179 1.21492 1.38161 1.02959 0.93786 0.93472 1.25605 0.95420 0.98351 0.98803 1.70007 1.41326 1.20536 1.24578 0.85689 0.78084 0.78322 0.80088 1.21057 1.20309 1.18659 1.20110 0.98649 0.88274 0.85518 1.22938 0.92329 1.01770 0.92435 1.21758 1.01165 1.03276 0.94845 1.22108 1.01033 1.05442 0.96756 1.24717 0.95220 1.03052 0.87943 1.84001 1.46690 1.61378 1.15909 0.73217 0.87544 0.86748 0.91448 0.92624 0.97248 0.93583 0.92449 0.85435 0.86708 0.84306 0.82167 0.74572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 19.25 74.32 1.43 -1.81 16 2 C -0.23 -4.98 13.34 31.13 0.42 -4.56 16 3 C 0.00 0.07 6.08 28.79 0.18 0.25 16 4 C 0.09 2.69 5.43 71.98 0.39 3.08 16 5 O -0.36 -12.84 9.04 -55.48 -0.50 -13.34 16 6 C 0.64 28.99 8.39 129.79 1.09 30.08 16 7 O -0.61 -32.62 15.71 19.78 0.31 -32.31 16 8 N -0.58 -25.02 2.44 -960.91 -2.34 -27.37 16 9 C 0.27 14.20 5.20 85.63 0.45 14.65 16 10 C -0.53 -29.52 9.13 25.60 0.23 -29.29 16 11 H 0.05 2.73 7.64 -2.91 -0.02 2.71 16 12 C 0.02 0.99 5.46 84.65 0.46 1.45 16 13 N -0.92 -54.33 13.29 21.45 0.28 -54.05 16 14 Si 0.95 44.99 29.54 68.60 2.03 47.01 16 15 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 18 C 0.20 6.54 5.99 85.63 0.51 7.05 16 19 C -0.04 -1.54 6.90 24.83 0.17 -1.37 16 20 C -0.19 -6.80 10.39 22.19 0.23 -6.57 16 21 C -0.23 -7.12 10.91 22.19 0.24 -6.88 16 22 C -0.04 -1.14 12.09 66.97 0.81 -0.33 16 23 O -0.18 -6.06 10.65 -2.58 -0.03 -6.09 16 24 H 0.25 2.35 7.80 -4.43 -0.03 2.32 16 25 H 0.11 2.10 8.14 -2.39 -0.02 2.09 16 26 H 0.11 2.04 8.14 -2.39 -0.02 2.03 16 27 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.01 0.56 7.42 -2.38 -0.02 0.54 16 30 H 0.05 2.34 7.89 -2.39 -0.02 2.32 16 31 H 0.27 14.84 8.31 -92.71 -0.77 14.06 16 32 H 0.13 3.68 7.89 -2.39 -0.02 3.66 16 33 H 0.11 3.16 7.37 -2.39 -0.02 3.14 16 34 H 0.14 5.15 8.06 -2.91 -0.02 5.13 16 35 H 0.16 4.08 8.06 -2.91 -0.02 4.05 16 36 H 0.24 4.02 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -73.85 331.62 7.43 -66.42 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 1.07 Total: 13.96 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 6.61 Total: 5.76 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -2.06 Total: -81.42 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -0.22 Total: -51.74 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -73.85 7.43 -66.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858882535.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.520 kcal (2) G-P(sol) polarization free energy of solvation -73.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds