Wall clock time and date at job start Mon Mar 30 2020 01:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47074 * 2 1 4 4 H 1.08998 * 109.47105 * 174.08800 * 3 2 1 5 5 C 1.50699 * 109.46844 * 54.08983 * 3 2 1 6 6 H 1.07998 * 120.00061 * 240.00283 * 5 3 2 7 7 C 1.37885 * 120.00143 * 60.00230 * 5 3 2 8 8 N 1.31513 * 119.99366 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00046 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47147 * 59.99969 * 9 7 5 11 11 H 1.48494 * 109.46820 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46877 * 300.00056 * 9 7 5 13 13 N 1.46900 * 109.47202 * 294.09239 * 3 2 1 14 14 C 1.46895 * 110.99796 * 275.78438 * 13 3 2 15 15 C 1.50703 * 109.47130 * 176.20566 * 14 13 3 16 16 C 1.34510 * 125.78988 * 89.71164 * 15 14 13 17 17 C 1.41383 * 106.84361 * 179.88933 * 16 15 14 18 18 C 1.50703 * 126.58440 * 180.12049 * 17 16 15 19 19 F 1.39895 * 109.46941 * 180.27425 * 18 17 16 20 20 F 1.39894 * 109.47100 * 300.27932 * 18 17 16 21 21 F 1.39899 * 109.46814 * 60.27619 * 18 17 16 22 22 C 1.34515 * 106.83535 * 0.37528 * 17 16 15 23 23 O 1.34302 * 108.42518 * 359.76729 * 22 17 16 24 24 H 1.08999 * 109.47598 * 58.55558 * 1 2 3 25 25 H 1.09001 * 109.47002 * 298.55371 * 1 2 3 26 26 H 1.08998 * 109.46842 * 178.55668 * 1 2 3 27 27 H 1.08996 * 109.47248 * 119.99997 * 2 1 3 28 28 H 1.08999 * 109.47448 * 240.00567 * 2 1 3 29 29 H 0.97004 * 119.99294 * 179.97438 * 8 7 5 30 30 H 1.00902 * 110.99884 * 39.73256 * 13 3 2 31 31 H 1.09002 * 109.47243 * 296.20338 * 14 13 3 32 32 H 1.09001 * 109.47481 * 56.20307 * 14 13 3 33 33 H 1.07999 * 126.58001 * 0.03045 * 16 15 14 34 34 H 1.08007 * 125.78612 * 179.74794 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1248 1.4444 0.1058 5 6 1.4217 2.1939 1.1508 6 1 0.8148 3.0670 0.9618 7 6 1.6309 1.7666 2.4450 8 7 2.3696 0.7031 2.6749 9 14 0.8651 2.6984 3.8714 10 1 -0.6128 2.6964 3.7275 11 1 1.2394 2.0415 5.1495 12 1 1.3606 4.0982 3.8712 13 7 1.6702 2.0927 -1.2643 14 6 2.6509 1.7939 -2.3164 15 6 2.1911 2.3984 -3.6180 16 6 2.4825 3.6361 -4.0569 17 6 1.8531 3.7837 -5.3143 18 6 1.8923 5.0017 -6.2009 19 9 1.1426 4.7610 -7.3572 20 9 1.3535 6.0953 -5.5149 21 9 3.2174 5.2792 -6.5535 22 6 1.2079 2.6302 -5.5647 23 8 1.4162 1.7949 -4.5340 24 1 -0.3634 0.5361 -0.8767 25 1 -0.3633 0.4912 0.9027 26 1 -0.3633 -1.0273 -0.0259 27 1 1.8933 -0.5138 0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 2.5171 0.4028 3.5854 30 1 0.7403 1.8249 -1.5502 31 1 3.6180 2.2150 -2.0418 32 1 2.7440 0.7138 -2.4302 33 1 3.0839 4.3746 -3.5476 34 1 0.6215 2.4129 -6.4453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878698084.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:20 Heat of formation + Delta-G solvation = -140.995769 kcal Electronic energy + Delta-G solvation = -21372.214123 eV Core-core repulsion = 17470.791911 eV Total energy + Delta-G solvation = -3901.422212 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.20636 -47.76724 -47.65820 -42.81227 -36.74014 -33.77723 -33.11279 -31.24975 -29.47232 -26.74091 -26.14926 -24.38999 -23.27290 -21.66422 -20.74512 -19.40804 -18.55745 -18.43132 -18.00328 -16.40896 -16.21838 -16.16763 -14.91634 -14.80064 -14.56144 -14.53423 -14.17505 -14.14325 -13.86643 -13.85045 -13.50548 -13.05128 -12.91087 -12.63428 -12.30351 -12.11891 -11.97314 -11.73351 -10.92981 -10.78643 -10.58729 -10.30019 -10.06717 -9.95678 -9.63493 -9.09265 -8.65841 -8.39574 -7.40898 -6.02867 -4.04730 1.40727 2.22273 2.50599 2.87271 3.32355 3.36830 3.40345 3.72112 3.88899 4.35867 4.40824 4.58315 4.90300 5.29204 5.29743 5.32543 5.59445 5.72998 5.83481 5.98369 6.23671 6.29046 6.31718 6.49544 6.82736 6.92852 7.13497 7.18036 7.43734 7.60621 7.81032 8.16609 8.36088 8.49254 9.00078 9.59055 11.04252 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.028050 B = 0.003803 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.981602 B = 7360.291651 C = 7840.365071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.147 4.147 3 C 0.215 3.785 4 H 0.037 0.963 5 C -0.491 4.491 6 H 0.062 0.938 7 C 0.059 3.941 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.678 5.678 14 C 0.133 3.867 15 C 0.019 3.981 16 C -0.164 4.164 17 C -0.282 4.282 18 C 0.541 3.459 19 F -0.182 7.182 20 F -0.174 7.174 21 F -0.177 7.177 22 C 0.028 3.972 23 O -0.161 6.161 24 H 0.029 0.971 25 H 0.067 0.933 26 H 0.023 0.977 27 H 0.095 0.905 28 H 0.012 0.988 29 H 0.260 0.740 30 H 0.332 0.668 31 H 0.101 0.899 32 H 0.043 0.957 33 H 0.160 0.840 34 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.741 3.140 -16.506 16.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.186 4.186 3 C 0.108 3.892 4 H 0.055 0.945 5 C -0.530 4.530 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.310 5.310 14 C 0.004 3.996 15 C -0.031 4.031 16 C -0.183 4.183 17 C -0.285 4.285 18 C 0.487 3.513 19 F -0.163 7.163 20 F -0.155 7.155 21 F -0.158 7.158 22 C -0.042 4.042 23 O -0.055 6.055 24 H 0.048 0.952 25 H 0.086 0.914 26 H 0.042 0.958 27 H 0.113 0.887 28 H 0.030 0.970 29 H 0.070 0.930 30 H 0.150 0.850 31 H 0.119 0.881 32 H 0.061 0.939 33 H 0.177 0.823 34 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -0.476 3.365 -16.143 16.497 hybrid contribution -0.591 -0.070 0.335 0.683 sum -1.067 3.295 -15.807 16.182 Atomic orbital electron populations 1.21568 0.97559 0.98125 1.01314 1.22128 0.95192 1.00930 1.00392 1.19263 0.96387 0.88783 0.84733 0.94533 1.20974 1.30807 1.11663 0.89577 0.91968 1.24898 0.95478 0.95141 0.98701 1.69867 1.39054 1.24024 1.20565 0.86598 0.79622 0.80030 0.81390 1.20353 1.21478 1.20287 1.61058 1.03871 1.63267 1.02842 1.20547 0.97719 0.97738 0.83581 1.22883 0.95241 0.92636 0.92341 1.21191 1.05147 0.97757 0.94243 1.20453 1.11601 0.96244 1.00160 1.17347 0.73552 0.82632 0.77757 1.93158 1.76926 1.94460 1.51802 1.93225 1.86041 1.56804 1.79473 1.93207 1.35670 1.94469 1.92465 1.23817 1.00145 0.87982 0.92251 1.84139 1.54695 1.41066 1.25604 0.95221 0.91423 0.95779 0.88710 0.96976 0.92969 0.85001 0.88143 0.93913 0.82250 0.77027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.39 37.16 0.35 -2.30 16 2 C -0.15 -3.27 5.50 -26.73 -0.15 -3.42 16 3 C 0.22 5.03 2.33 -68.86 -0.16 4.87 16 4 H 0.04 0.93 7.86 -51.93 -0.41 0.52 16 5 C -0.49 -12.81 7.35 -34.44 -0.25 -13.06 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.55 5.22 -17.82 -0.09 1.46 16 8 N -0.90 -24.45 11.39 55.43 0.63 -23.82 16 9 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 13 N -0.68 -13.53 6.24 -109.22 -0.68 -14.22 16 14 C 0.13 2.20 6.01 -4.98 -0.03 2.17 16 15 C 0.02 0.28 6.79 -35.62 -0.24 0.04 16 16 C -0.16 -2.31 10.77 -39.70 -0.43 -2.74 16 17 C -0.28 -3.58 5.59 -104.74 -0.59 -4.16 16 18 C 0.54 6.51 3.53 36.01 0.13 6.63 16 19 F -0.18 -1.99 16.79 2.25 0.04 -1.95 16 20 F -0.17 -2.28 17.30 2.25 0.04 -2.24 16 21 F -0.18 -2.19 17.30 2.25 0.04 -2.15 16 22 C 0.03 0.32 11.52 29.42 0.34 0.66 16 23 O -0.16 -2.23 10.65 5.71 0.06 -2.17 16 24 H 0.03 0.56 6.42 -51.93 -0.33 0.22 16 25 H 0.07 1.54 7.05 -51.93 -0.37 1.18 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.09 2.38 6.25 -51.93 -0.32 2.06 16 28 H 0.01 0.24 7.24 -51.93 -0.38 -0.14 16 29 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.33 6.50 6.55 -39.29 -0.26 6.24 16 31 H 0.10 1.59 8.13 -51.93 -0.42 1.17 16 32 H 0.04 0.70 7.23 -51.93 -0.38 0.32 16 33 H 0.16 2.14 8.06 -52.49 -0.42 1.72 16 34 H 0.21 1.53 7.95 -52.48 -0.42 1.11 16 LS Contribution 301.53 15.07 4.54 4.54 Total: -1.00 -27.06 301.53 -5.15 -32.21 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -3.67 Total: 3.80 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -1.12 Total: -9.85 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: -0.05 Total: -38.03 kcal Atomic # 8 Polarization: -2.23 SS G_CDS: 0.06 Total: -2.17 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 0.12 Total: -6.34 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.06 -5.15 -32.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878698084.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.787 kcal (2) G-P(sol) polarization free energy of solvation -27.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds