Wall clock time and date at job start Mon Mar 30 2020 01:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47074 * 2 1 4 4 H 1.08998 * 109.47105 * 174.08800 * 3 2 1 5 5 C 1.50699 * 109.46844 * 54.08983 * 3 2 1 6 6 H 1.07998 * 120.00061 * 240.00283 * 5 3 2 7 7 C 1.37885 * 120.00143 * 60.00230 * 5 3 2 8 8 N 1.31513 * 119.99366 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00046 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47147 * 59.99969 * 9 7 5 11 11 H 1.48494 * 109.46820 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46877 * 300.00056 * 9 7 5 13 13 N 1.46900 * 109.47202 * 294.09239 * 3 2 1 14 14 C 1.46895 * 110.99796 * 275.78438 * 13 3 2 15 15 C 1.50703 * 109.47130 * 176.20566 * 14 13 3 16 16 C 1.34510 * 125.78988 * 89.71164 * 15 14 13 17 17 C 1.41383 * 106.84361 * 179.88933 * 16 15 14 18 18 C 1.50703 * 126.58440 * 180.12049 * 17 16 15 19 19 F 1.39895 * 109.46941 * 180.27425 * 18 17 16 20 20 F 1.39894 * 109.47100 * 300.27932 * 18 17 16 21 21 F 1.39899 * 109.46814 * 60.27619 * 18 17 16 22 22 C 1.34515 * 106.83535 * 0.37528 * 17 16 15 23 23 O 1.34302 * 108.42518 * 359.76729 * 22 17 16 24 24 H 1.08999 * 109.47598 * 58.55558 * 1 2 3 25 25 H 1.09001 * 109.47002 * 298.55371 * 1 2 3 26 26 H 1.08998 * 109.46842 * 178.55668 * 1 2 3 27 27 H 1.08996 * 109.47248 * 119.99997 * 2 1 3 28 28 H 1.08999 * 109.47448 * 240.00567 * 2 1 3 29 29 H 0.97004 * 119.99294 * 179.97438 * 8 7 5 30 30 H 1.00902 * 110.99884 * 39.73256 * 13 3 2 31 31 H 1.09002 * 109.47243 * 296.20338 * 14 13 3 32 32 H 1.09001 * 109.47481 * 56.20307 * 14 13 3 33 33 H 1.07999 * 126.58001 * 0.03045 * 16 15 14 34 34 H 1.08007 * 125.78612 * 179.74794 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1248 1.4444 0.1058 5 6 1.4217 2.1939 1.1508 6 1 0.8148 3.0670 0.9618 7 6 1.6309 1.7666 2.4450 8 7 2.3696 0.7031 2.6749 9 14 0.8651 2.6984 3.8714 10 1 -0.6128 2.6964 3.7275 11 1 1.2394 2.0415 5.1495 12 1 1.3606 4.0982 3.8712 13 7 1.6702 2.0927 -1.2643 14 6 2.6509 1.7939 -2.3164 15 6 2.1911 2.3984 -3.6180 16 6 2.4825 3.6361 -4.0569 17 6 1.8531 3.7837 -5.3143 18 6 1.8923 5.0017 -6.2009 19 9 1.1426 4.7610 -7.3572 20 9 1.3535 6.0953 -5.5149 21 9 3.2174 5.2792 -6.5535 22 6 1.2079 2.6302 -5.5647 23 8 1.4162 1.7949 -4.5340 24 1 -0.3634 0.5361 -0.8767 25 1 -0.3633 0.4912 0.9027 26 1 -0.3633 -1.0273 -0.0259 27 1 1.8933 -0.5138 0.8899 28 1 1.8934 -0.5137 -0.8900 29 1 2.5171 0.4028 3.5854 30 1 0.7403 1.8249 -1.5502 31 1 3.6180 2.2150 -2.0418 32 1 2.7440 0.7138 -2.4302 33 1 3.0839 4.3746 -3.5476 34 1 0.6215 2.4129 -6.4453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878698084.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:20 Heat of formation + Delta-G solvation = -156.532042 kcal Electronic energy + Delta-G solvation = -21372.887827 eV Core-core repulsion = 17470.791911 eV Total energy + Delta-G solvation = -3902.095915 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.14953 -48.68432 -48.63326 -43.84986 -38.42846 -34.95765 -34.65609 -32.96340 -30.84674 -28.41897 -27.20285 -25.91382 -25.00452 -22.70813 -21.80340 -21.20576 -19.51153 -19.40847 -19.08004 -18.01736 -17.40637 -17.30473 -16.73552 -16.36784 -15.58632 -15.50646 -15.47722 -15.08425 -15.02386 -14.81710 -14.80529 -14.65542 -14.33591 -13.98794 -13.77678 -13.50558 -13.27800 -13.14188 -12.76362 -12.58623 -12.43915 -11.88913 -11.74746 -11.42273 -11.32496 -10.99989 -10.41454 -9.75357 -9.01893 -8.04557 -6.12299 0.43396 1.12698 1.46309 1.47126 1.54039 1.54736 1.87220 2.47672 2.75679 2.93311 3.25168 3.40811 3.61200 3.80199 3.88406 4.20199 4.41605 4.54361 4.56049 4.62073 4.71935 4.76146 4.89985 5.10531 5.14338 5.32680 5.42079 5.69306 5.75739 5.81360 5.88667 6.30379 6.61428 6.73648 6.97643 7.55017 9.00631 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.028050 B = 0.003803 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.981602 B = 7360.291651 C = 7840.365071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.140 4.140 3 C 0.221 3.779 4 H 0.009 0.991 5 C -0.502 4.502 6 H 0.051 0.949 7 C 0.018 3.982 8 N -0.918 5.918 9 Si 0.949 3.051 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.683 5.683 14 C 0.138 3.862 15 C -0.002 4.002 16 C -0.164 4.164 17 C -0.301 4.301 18 C 0.548 3.452 19 F -0.173 7.173 20 F -0.182 7.182 21 F -0.180 7.180 22 C 0.056 3.944 23 O -0.168 6.168 24 H 0.046 0.954 25 H 0.041 0.959 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.030 0.970 29 H 0.259 0.741 30 H 0.334 0.666 31 H 0.101 0.899 32 H 0.046 0.954 33 H 0.160 0.840 34 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.740 3.265 -18.045 18.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.180 4.180 3 C 0.113 3.887 4 H 0.027 0.973 5 C -0.541 4.541 6 H 0.070 0.930 7 C -0.181 4.181 8 N -0.559 5.559 9 Si 0.775 3.225 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.315 5.315 14 C 0.010 3.990 15 C -0.051 4.051 16 C -0.184 4.184 17 C -0.304 4.304 18 C 0.494 3.506 19 F -0.154 7.154 20 F -0.163 7.163 21 F -0.161 7.161 22 C -0.014 4.014 23 O -0.063 6.063 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.153 0.847 31 H 0.119 0.881 32 H 0.064 0.936 33 H 0.177 0.823 34 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -1.477 3.497 -17.695 18.097 hybrid contribution -0.273 -0.085 0.692 0.749 sum -1.750 3.412 -17.003 17.430 Atomic orbital electron populations 1.21459 0.96147 0.99356 1.00779 1.21975 0.96384 0.99904 0.99718 1.19000 0.94413 0.89478 0.85813 0.97324 1.21208 1.30554 1.11464 0.90827 0.93049 1.25524 0.95941 0.95847 1.00788 1.69988 1.40036 1.25071 1.20764 0.85753 0.79028 0.78809 0.78864 1.19842 1.21280 1.20242 1.60882 1.04734 1.63100 1.02782 1.20407 0.96894 0.98110 0.83630 1.22420 0.97183 0.93033 0.92473 1.21326 1.04726 0.97418 0.94926 1.20531 1.12587 0.97250 0.99998 1.17194 0.73455 0.82124 0.77833 1.93176 1.76654 1.94358 1.51202 1.93211 1.86152 1.57238 1.79743 1.93203 1.35968 1.94471 1.92478 1.24667 0.98143 0.86665 0.91964 1.84134 1.54566 1.41557 1.25999 0.93500 0.93980 0.93782 0.91746 0.95162 0.93160 0.84706 0.88125 0.93587 0.82271 0.72789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.83 9.39 71.98 0.68 -4.16 16 2 C -0.14 -6.23 5.50 30.60 0.17 -6.06 16 3 C 0.22 10.44 2.33 44.17 0.10 10.54 16 4 H 0.01 0.46 7.86 -2.39 -0.02 0.44 16 5 C -0.50 -26.44 7.35 25.60 0.19 -26.25 16 6 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 7 C 0.02 0.94 5.22 84.66 0.44 1.38 16 8 N -0.92 -50.90 11.39 21.45 0.24 -50.66 16 9 Si 0.95 42.95 29.54 68.60 2.03 44.98 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 13 N -0.68 -27.07 6.24 -499.46 -3.12 -30.18 16 14 C 0.14 4.50 6.01 85.56 0.51 5.02 16 15 C 0.00 -0.05 6.79 24.83 0.17 0.12 16 16 C -0.16 -4.44 10.77 22.19 0.24 -4.20 16 17 C -0.30 -6.96 5.59 -19.94 -0.11 -7.07 16 18 C 0.55 12.03 3.53 71.24 0.25 12.28 16 19 F -0.17 -3.28 16.79 44.97 0.75 -2.53 16 20 F -0.18 -4.49 17.30 44.97 0.78 -3.71 16 21 F -0.18 -4.15 17.30 44.97 0.78 -3.38 16 22 C 0.06 1.07 11.52 66.97 0.77 1.84 16 23 O -0.17 -4.24 10.65 -2.49 -0.03 -4.27 16 24 H 0.05 1.70 6.42 -2.39 -0.02 1.68 16 25 H 0.04 1.89 7.05 -2.39 -0.02 1.87 16 26 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 27 H 0.06 3.28 6.25 -2.39 -0.01 3.26 16 28 H 0.03 1.20 7.24 -2.39 -0.02 1.18 16 29 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 30 H 0.33 12.78 6.55 -89.69 -0.59 12.19 16 31 H 0.10 3.22 8.13 -2.39 -0.02 3.20 16 32 H 0.05 1.46 7.23 -2.39 -0.02 1.45 16 33 H 0.16 4.20 8.06 -2.91 -0.02 4.17 16 34 H 0.26 2.42 7.95 -2.91 -0.02 2.40 16 Total: -1.00 -57.67 301.53 5.40 -52.27 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.55 Total: 14.04 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 3.41 Total: -16.56 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -2.87 Total: -80.84 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.03 Total: -4.27 kcal Atomic # 9 Polarization: -11.92 SS G_CDS: 2.31 Total: -9.61 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -57.67 5.40 -52.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878698084.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.266 kcal (2) G-P(sol) polarization free energy of solvation -57.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds