Wall clock time and date at job start Mon Mar 30 2020 01:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47366 * 2 1 4 4 H 1.09002 * 109.47325 * 179.82830 * 3 2 1 5 5 C 1.50694 * 109.47105 * 299.82843 * 3 2 1 6 6 H 1.08001 * 120.00445 * 120.00183 * 5 3 2 7 7 C 1.37881 * 120.00174 * 299.99580 * 5 3 2 8 8 N 1.31514 * 119.99838 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00047 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46918 * 90.00563 * 9 7 5 11 11 H 1.48507 * 109.46861 * 210.00299 * 9 7 5 12 12 H 1.48497 * 109.47218 * 330.00509 * 9 7 5 13 13 N 1.46897 * 109.47235 * 59.83060 * 3 2 1 14 14 C 1.46901 * 111.00408 * 85.92149 * 13 3 2 15 15 C 1.50700 * 109.47165 * 175.56630 * 14 13 3 16 16 C 1.38383 * 119.89163 * 269.73060 * 15 14 13 17 17 C 1.38141 * 120.20984 * 179.74024 * 16 15 14 18 18 C 1.38570 * 119.89417 * 0.51867 * 17 16 15 19 19 O 1.35678 * 133.02375 * 179.78311 * 18 17 16 20 20 C 1.34286 * 108.28643 * 179.97438 * 19 18 17 21 21 O 1.21510 * 125.37030 * 180.02562 * 20 19 18 22 22 O 1.34296 * 109.26194 * 359.97438 * 20 19 18 23 23 C 1.35675 * 108.28312 * 0.02562 * 22 20 19 24 24 C 1.38140 * 119.89248 * 90.00385 * 15 14 13 25 25 H 1.09007 * 109.47209 * 295.59598 * 1 2 3 26 26 H 1.09000 * 109.47062 * 55.59071 * 1 2 3 27 27 H 1.08993 * 109.47621 * 175.59302 * 1 2 3 28 28 H 1.08997 * 109.47382 * 239.99836 * 2 1 3 29 29 H 1.09003 * 109.47195 * 120.00086 * 2 1 3 30 30 H 0.97003 * 120.00382 * 179.97438 * 8 7 5 31 31 H 1.00901 * 111.00343 * 209.88627 * 13 3 2 32 32 H 1.09002 * 109.47213 * 295.57012 * 14 13 3 33 33 H 1.09000 * 109.46568 * 55.56883 * 14 13 3 34 34 H 1.08000 * 119.89336 * 359.97438 * 16 15 14 35 35 H 1.08005 * 120.04991 * 180.27747 * 17 16 15 36 36 H 1.08008 * 120.05361 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0031 5 6 1.5412 2.1517 -1.2325 6 1 0.9200 3.0299 -1.1362 7 6 1.8778 1.6794 -2.4834 8 7 2.6339 0.6097 -2.6009 9 14 1.2589 2.5581 -4.0113 10 1 2.2378 3.5996 -4.4139 11 1 1.0972 1.5776 -5.1148 12 1 -0.0502 3.1955 -3.7196 13 7 1.5470 2.1362 1.1973 14 6 2.4392 1.9093 2.3421 15 6 1.9629 2.7213 3.5189 16 6 2.4370 4.0079 3.7062 17 6 2.0007 4.7600 4.7797 18 6 1.0937 4.2206 5.6777 19 8 0.5025 4.7038 6.7993 20 6 -0.3046 3.7513 7.2939 21 8 -0.9856 3.8565 8.2948 22 8 -0.2413 2.6646 6.5074 23 6 0.6206 2.9236 5.4921 24 6 1.0588 2.1769 4.4102 25 1 -0.3634 0.4440 0.9269 26 1 -0.3633 0.5807 -0.8478 27 1 -0.3634 -1.0245 -0.0790 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.8705 0.2772 -3.4809 31 1 1.4288 3.1226 1.0209 32 1 2.4324 0.8513 2.6040 33 1 3.4527 2.2118 2.0783 34 1 3.1474 4.4266 3.0088 35 1 2.3690 5.7654 4.9209 36 1 0.6943 1.1708 4.2642 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894468688.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:16 Heat of formation + Delta-G solvation = -68.645028 kcal Electronic energy + Delta-G solvation = -20834.579709 eV Core-core repulsion = 17478.151601 eV Total energy + Delta-G solvation = -3356.428108 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.17931 -39.30594 -38.10522 -37.99634 -36.19713 -33.11312 -31.38655 -30.87635 -29.63768 -26.70686 -24.82001 -24.21699 -23.69614 -23.19360 -22.39556 -19.19053 -19.00313 -18.37310 -18.15014 -17.21560 -16.46206 -15.43779 -15.25440 -14.89804 -14.40365 -14.33437 -14.23710 -14.04017 -13.92716 -13.49949 -13.28218 -12.54063 -12.27569 -11.96491 -11.82330 -11.70096 -11.66284 -11.23836 -10.98653 -10.80294 -10.47864 -10.16557 -9.82778 -9.48157 -9.19319 -8.91678 -8.74970 -8.54835 -7.42789 -6.10861 -4.16952 0.71399 0.74621 1.78775 1.86631 2.23882 3.19664 3.23431 3.31505 3.34566 3.91789 4.32885 4.35633 4.61879 4.81110 4.91955 5.01830 5.20187 5.36175 5.55298 5.57920 5.75779 5.89820 5.98839 6.21370 6.36375 6.47018 6.59865 6.75469 6.77007 6.85468 7.13780 7.17270 7.38302 7.64967 7.68440 7.74101 8.13778 8.24184 8.50840 8.90838 9.48475 10.94867 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.031724 B = 0.003567 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.402901 B = 7848.832806 C = 8095.830045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 C 0.216 3.784 4 H 0.003 0.997 5 C -0.515 4.515 6 H 0.060 0.940 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.679 5.679 14 C 0.094 3.906 15 C -0.041 4.041 16 C -0.091 4.091 17 C -0.073 4.073 18 C 0.002 3.998 19 O -0.238 6.238 20 C 0.591 3.409 21 O -0.423 6.423 22 O -0.235 6.235 23 C 0.013 3.987 24 C -0.055 4.055 25 H 0.041 0.959 26 H 0.056 0.944 27 H 0.014 0.986 28 H 0.087 0.913 29 H 0.010 0.990 30 H 0.261 0.739 31 H 0.333 0.667 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.921 4.943 12.457 13.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.142 4.142 3 C 0.109 3.891 4 H 0.021 0.979 5 C -0.554 4.554 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.311 5.311 14 C -0.035 4.035 15 C -0.042 4.042 16 C -0.109 4.109 17 C -0.092 4.092 18 C -0.042 4.042 19 O -0.151 6.151 20 C 0.399 3.601 21 O -0.315 6.315 22 O -0.148 6.148 23 C -0.030 4.030 24 C -0.074 4.074 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.033 0.967 28 H 0.106 0.894 29 H 0.029 0.971 30 H 0.071 0.929 31 H 0.151 0.849 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.166 0.834 35 H 0.163 0.837 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.171 4.357 13.060 13.769 hybrid contribution 0.258 0.988 -0.903 1.363 sum 0.429 5.345 12.157 13.287 Atomic orbital electron populations 1.21455 0.97452 0.97530 1.01362 1.21449 0.95083 0.98129 0.99572 1.19188 0.93094 0.91513 0.85304 0.97894 1.21155 1.31904 1.12100 0.90236 0.92229 1.24876 0.94966 0.94950 0.98956 1.69871 1.36517 1.22568 1.23656 0.86574 0.79279 0.79351 0.82685 1.20781 1.21213 1.19826 1.60844 1.48131 1.16241 1.05860 1.20991 0.94852 0.98724 0.88928 1.20040 0.94262 0.94435 0.95468 1.21113 0.99907 0.93455 0.96458 1.20016 0.95558 1.01265 0.92334 1.19578 1.01744 0.92987 0.89871 1.85224 1.52694 1.40133 1.37055 1.21465 0.79183 0.76351 0.83143 1.91279 1.41063 1.78257 1.20874 1.85256 1.56712 1.38261 1.34595 1.19604 0.95598 0.95149 0.92687 1.20010 0.96794 1.00877 0.89693 0.93981 0.92466 0.96720 0.89425 0.97114 0.92854 0.84923 0.90240 0.94150 0.83370 0.83716 0.83306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 9.52 37.15 0.35 -2.18 16 2 C -0.10 -2.31 5.59 -26.73 -0.15 -2.46 16 3 C 0.22 4.83 2.30 -68.87 -0.16 4.67 16 4 H 0.00 0.08 7.71 -51.93 -0.40 -0.32 16 5 C -0.52 -12.79 7.26 -34.44 -0.25 -13.04 16 6 H 0.06 1.47 7.60 -52.49 -0.40 1.07 16 7 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 8 N -0.89 -23.77 11.32 55.43 0.63 -23.14 16 9 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.68 -12.17 5.64 -109.22 -0.62 -12.79 16 14 C 0.09 1.34 5.66 -4.98 -0.03 1.31 16 15 C -0.04 -0.48 5.35 -104.60 -0.56 -1.04 16 16 C -0.09 -0.89 9.69 -39.56 -0.38 -1.28 16 17 C -0.07 -0.69 10.06 -39.49 -0.40 -1.09 16 18 C 0.00 0.02 7.35 -39.07 -0.29 -0.26 16 19 O -0.24 -3.01 10.79 -30.99 -0.33 -3.34 16 20 C 0.59 8.09 9.67 101.05 0.98 9.07 16 21 O -0.42 -6.64 18.04 -27.23 -0.49 -7.13 16 22 O -0.23 -3.14 10.79 -31.00 -0.33 -3.47 16 23 C 0.01 0.17 7.35 -39.07 -0.29 -0.12 16 24 C -0.05 -0.65 9.71 -39.50 -0.38 -1.03 16 25 H 0.04 0.83 7.74 -51.92 -0.40 0.43 16 26 H 0.06 1.31 7.07 -51.93 -0.37 0.94 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 2.21 6.06 -51.93 -0.31 1.90 16 29 H 0.01 0.21 7.60 -51.93 -0.39 -0.18 16 30 H 0.26 6.74 8.31 -40.82 -0.34 6.41 16 31 H 0.33 5.87 8.13 -39.29 -0.32 5.55 16 32 H 0.08 1.14 7.55 -51.93 -0.39 0.75 16 33 H 0.04 0.57 7.88 -51.93 -0.41 0.16 16 34 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 36 H 0.15 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 310.23 15.07 4.68 4.68 Total: -1.00 -27.22 310.23 -7.37 -34.59 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.23 Total: 1.41 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -1.65 Total: -5.89 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.01 Total: -35.93 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -1.16 Total: -13.94 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.22 -7.37 -34.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894468688.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.058 kcal (2) G-P(sol) polarization free energy of solvation -27.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds