Wall clock time and date at job start Mon Mar 30 2020 01:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47366 * 2 1 4 4 H 1.09002 * 109.47325 * 179.82830 * 3 2 1 5 5 C 1.50694 * 109.47105 * 299.82843 * 3 2 1 6 6 H 1.08001 * 120.00445 * 120.00183 * 5 3 2 7 7 C 1.37881 * 120.00174 * 299.99580 * 5 3 2 8 8 N 1.31514 * 119.99838 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00047 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46918 * 90.00563 * 9 7 5 11 11 H 1.48507 * 109.46861 * 210.00299 * 9 7 5 12 12 H 1.48497 * 109.47218 * 330.00509 * 9 7 5 13 13 N 1.46897 * 109.47235 * 59.83060 * 3 2 1 14 14 C 1.46901 * 111.00408 * 85.92149 * 13 3 2 15 15 C 1.50700 * 109.47165 * 175.56630 * 14 13 3 16 16 C 1.38383 * 119.89163 * 269.73060 * 15 14 13 17 17 C 1.38141 * 120.20984 * 179.74024 * 16 15 14 18 18 C 1.38570 * 119.89417 * 0.51867 * 17 16 15 19 19 O 1.35678 * 133.02375 * 179.78311 * 18 17 16 20 20 C 1.34286 * 108.28643 * 179.97438 * 19 18 17 21 21 O 1.21510 * 125.37030 * 180.02562 * 20 19 18 22 22 O 1.34296 * 109.26194 * 359.97438 * 20 19 18 23 23 C 1.35675 * 108.28312 * 0.02562 * 22 20 19 24 24 C 1.38140 * 119.89248 * 90.00385 * 15 14 13 25 25 H 1.09007 * 109.47209 * 295.59598 * 1 2 3 26 26 H 1.09000 * 109.47062 * 55.59071 * 1 2 3 27 27 H 1.08993 * 109.47621 * 175.59302 * 1 2 3 28 28 H 1.08997 * 109.47382 * 239.99836 * 2 1 3 29 29 H 1.09003 * 109.47195 * 120.00086 * 2 1 3 30 30 H 0.97003 * 120.00382 * 179.97438 * 8 7 5 31 31 H 1.00901 * 111.00343 * 209.88627 * 13 3 2 32 32 H 1.09002 * 109.47213 * 295.57012 * 14 13 3 33 33 H 1.09000 * 109.46568 * 55.56883 * 14 13 3 34 34 H 1.08000 * 119.89336 * 359.97438 * 16 15 14 35 35 H 1.08005 * 120.04991 * 180.27747 * 17 16 15 36 36 H 1.08008 * 120.05361 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0031 5 6 1.5412 2.1517 -1.2325 6 1 0.9200 3.0299 -1.1362 7 6 1.8778 1.6794 -2.4834 8 7 2.6339 0.6097 -2.6009 9 14 1.2589 2.5581 -4.0113 10 1 2.2378 3.5996 -4.4139 11 1 1.0972 1.5776 -5.1148 12 1 -0.0502 3.1955 -3.7196 13 7 1.5470 2.1362 1.1973 14 6 2.4392 1.9093 2.3421 15 6 1.9629 2.7213 3.5189 16 6 2.4370 4.0079 3.7062 17 6 2.0007 4.7600 4.7797 18 6 1.0937 4.2206 5.6777 19 8 0.5025 4.7038 6.7993 20 6 -0.3046 3.7513 7.2939 21 8 -0.9856 3.8565 8.2948 22 8 -0.2413 2.6646 6.5074 23 6 0.6206 2.9236 5.4921 24 6 1.0588 2.1769 4.4102 25 1 -0.3634 0.4440 0.9269 26 1 -0.3633 0.5807 -0.8478 27 1 -0.3634 -1.0245 -0.0790 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.8705 0.2772 -3.4809 31 1 1.4288 3.1226 1.0209 32 1 2.4324 0.8513 2.6040 33 1 3.4527 2.2118 2.0783 34 1 3.1474 4.4266 3.0088 35 1 2.3690 5.7654 4.9209 36 1 0.6943 1.1708 4.2642 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894468688.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:15 Heat of formation + Delta-G solvation = -82.855213 kcal Electronic energy + Delta-G solvation = -20835.195909 eV Core-core repulsion = 17478.151601 eV Total energy + Delta-G solvation = -3357.044308 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.17122 -40.30460 -39.12668 -39.09714 -37.73524 -34.66324 -32.93975 -31.90936 -30.89888 -28.31971 -26.17591 -25.24010 -24.98704 -24.57885 -23.44749 -20.90629 -19.99471 -19.40241 -19.13808 -18.49066 -17.98160 -16.91328 -16.39479 -16.23218 -15.49808 -15.46406 -15.39971 -15.23646 -15.14400 -14.77697 -14.67645 -13.96101 -13.84273 -13.31434 -13.13779 -12.95040 -12.78886 -12.71154 -12.53248 -12.35585 -12.22446 -11.82378 -11.55640 -11.24742 -10.73938 -10.48335 -10.05285 -9.73864 -8.92788 -8.05331 -6.16280 -0.20823 -0.12919 0.75184 0.85203 1.28086 1.44574 1.48303 1.56050 2.30863 2.47299 3.03372 3.24625 3.39032 3.61470 3.89941 4.01062 4.10760 4.14742 4.56443 4.69837 4.74993 4.82430 4.85692 4.89789 5.00440 5.03266 5.31355 5.36815 5.41806 5.48863 5.62493 5.70042 5.76991 5.88238 5.89556 5.95494 6.35628 6.53516 6.85370 7.09448 7.52640 8.99233 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.031724 B = 0.003567 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.402901 B = 7848.832806 C = 8095.830045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.101 4.101 3 C 0.223 3.777 4 H -0.025 1.025 5 C -0.520 4.520 6 H 0.059 0.941 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 0.948 3.052 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.270 1.270 13 N -0.677 5.677 14 C 0.099 3.901 15 C -0.047 4.047 16 C -0.079 4.079 17 C -0.059 4.059 18 C -0.004 4.004 19 O -0.235 6.235 20 C 0.596 3.404 21 O -0.449 6.449 22 O -0.241 6.241 23 C -0.003 4.003 24 C -0.056 4.056 25 H 0.054 0.946 26 H 0.033 0.967 27 H 0.028 0.972 28 H 0.055 0.945 29 H 0.025 0.975 30 H 0.259 0.741 31 H 0.336 0.664 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.172 0.828 35 H 0.178 0.822 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.086 6.277 12.781 14.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.140 4.140 3 C 0.115 3.885 4 H -0.007 1.007 5 C -0.559 4.559 6 H 0.077 0.923 7 C -0.180 4.180 8 N -0.555 5.555 9 Si 0.775 3.225 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.194 1.194 13 N -0.308 5.308 14 C -0.030 4.030 15 C -0.047 4.047 16 C -0.097 4.097 17 C -0.077 4.077 18 C -0.048 4.048 19 O -0.148 6.148 20 C 0.404 3.596 21 O -0.343 6.343 22 O -0.154 6.154 23 C -0.046 4.046 24 C -0.075 4.075 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.154 0.846 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.189 0.811 35 H 0.196 0.804 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.340 5.704 13.388 14.557 hybrid contribution 0.258 0.581 -0.981 1.169 sum 0.598 6.284 12.407 13.921 Atomic orbital electron populations 1.21324 0.96313 0.98137 1.00888 1.21340 0.95985 0.97985 0.98708 1.18930 0.91284 0.91851 0.86466 1.00709 1.21470 1.31174 1.11935 0.91302 0.92322 1.25548 0.95359 0.95597 1.01535 1.70002 1.37800 1.23830 1.23892 0.85709 0.78878 0.78283 0.79657 1.20313 1.21623 1.19438 1.60689 1.48926 1.16111 1.05122 1.20919 0.94500 0.99235 0.88355 1.19794 0.95035 0.95152 0.94760 1.21367 0.99381 0.92403 0.96564 1.20372 0.93977 1.02430 0.90895 1.19925 1.02182 0.92811 0.89879 1.85210 1.52455 1.39718 1.37416 1.21380 0.78931 0.76405 0.82838 1.91255 1.42214 1.78834 1.21989 1.85226 1.57042 1.38195 1.34911 1.19708 0.96181 0.95855 0.92889 1.20029 0.96772 1.01084 0.89593 0.92717 0.94765 0.95304 0.92613 0.95621 0.93152 0.84587 0.90495 0.93637 0.81100 0.80424 0.83082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.47 9.52 71.98 0.69 -3.79 16 2 C -0.10 -4.50 5.59 30.59 0.17 -4.33 16 3 C 0.22 9.88 2.30 44.17 0.10 9.99 16 4 H -0.02 -1.21 7.71 -2.39 -0.02 -1.23 16 5 C -0.52 -25.65 7.26 25.60 0.19 -25.46 16 6 H 0.06 2.84 7.60 -2.91 -0.02 2.82 16 7 C 0.02 0.97 5.30 84.66 0.45 1.42 16 8 N -0.92 -49.65 11.32 21.45 0.24 -49.40 16 9 Si 0.95 41.12 29.54 68.60 2.03 43.14 16 10 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 13 N -0.68 -23.32 5.64 -499.47 -2.81 -26.13 16 14 C 0.10 2.63 5.66 85.56 0.48 3.12 16 15 C -0.05 -0.99 5.35 -19.85 -0.11 -1.09 16 16 C -0.08 -1.28 9.69 22.28 0.22 -1.06 16 17 C -0.06 -0.89 10.06 22.33 0.22 -0.67 16 18 C 0.00 -0.09 7.35 22.60 0.17 0.08 16 19 O -0.23 -5.56 10.79 14.78 0.16 -5.40 16 20 C 0.60 15.92 9.67 113.37 1.10 17.02 16 21 O -0.45 -14.03 18.04 27.41 0.49 -13.53 16 22 O -0.24 -6.25 10.79 14.72 0.16 -6.10 16 23 C 0.00 -0.07 7.35 22.60 0.17 0.10 16 24 C -0.06 -1.23 9.71 22.33 0.22 -1.01 16 25 H 0.05 2.07 7.74 -2.38 -0.02 2.05 16 26 H 0.03 1.53 7.07 -2.39 -0.02 1.51 16 27 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 2.85 6.06 -2.39 -0.01 2.84 16 29 H 0.03 1.03 7.60 -2.39 -0.02 1.01 16 30 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 31 H 0.34 11.23 8.13 -89.69 -0.73 10.50 16 32 H 0.08 2.10 7.55 -2.39 -0.02 2.08 16 33 H 0.05 1.20 7.88 -2.39 -0.02 1.18 16 34 H 0.17 2.05 8.06 -2.91 -0.02 2.02 16 35 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 36 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -58.25 310.23 4.71 -53.54 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.39 Total: 9.58 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 4.06 Total: -5.70 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -2.57 Total: -75.54 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: 0.81 Total: -25.02 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Total: -58.25 4.71 -53.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894468688.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.318 kcal (2) G-P(sol) polarization free energy of solvation -58.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds