Wall clock time and date at job start Mon Mar 30 2020 01:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46933 * 2 1 4 4 H 1.09001 * 109.47334 * 175.06299 * 3 2 1 5 5 C 1.50704 * 109.47437 * 55.06307 * 3 2 1 6 6 H 1.07998 * 120.00114 * 245.70497 * 5 3 2 7 7 C 1.37884 * 119.99779 * 65.69390 * 5 3 2 8 8 N 1.31510 * 119.99718 * 5.50636 * 7 5 3 9 9 Si 1.86800 * 120.00056 * 185.49846 * 7 5 3 10 10 H 1.48490 * 109.47046 * 270.00622 * 9 7 5 11 11 H 1.48504 * 109.46887 * 30.00607 * 9 7 5 12 12 H 1.48498 * 109.46881 * 150.00018 * 9 7 5 13 13 N 1.46901 * 109.47054 * 295.06357 * 3 2 1 14 14 C 1.46897 * 111.00188 * 279.83083 * 13 3 2 15 15 C 1.50695 * 109.47193 * 185.02592 * 14 13 3 16 16 C 1.38382 * 119.89792 * 89.99947 * 15 14 13 17 17 C 1.38140 * 120.21847 * 179.97438 * 16 15 14 18 18 C 1.38567 * 119.89174 * 0.02562 * 17 16 15 19 19 O 1.35678 * 133.02534 * 180.02562 * 18 17 16 20 20 C 1.34296 * 108.28368 * 179.97438 * 19 18 17 21 21 O 1.21507 * 125.36328 * 179.97438 * 20 19 18 22 22 O 1.34290 * 109.26283 * 359.97438 * 20 19 18 23 23 C 1.35680 * 108.28629 * 0.02562 * 22 20 19 24 24 C 1.38146 * 119.89156 * 269.72275 * 15 14 13 25 25 H 1.09007 * 109.46745 * 185.00714 * 1 2 3 26 26 H 1.08997 * 109.47944 * 305.01014 * 1 2 3 27 27 H 1.09004 * 109.46980 * 65.01711 * 1 2 3 28 28 H 1.08999 * 109.47662 * 239.99923 * 2 1 3 29 29 H 1.09002 * 109.47173 * 119.99574 * 2 1 3 30 30 H 0.97000 * 120.00360 * 355.14166 * 8 7 5 31 31 H 1.00908 * 110.99960 * 43.78725 * 13 3 2 32 32 H 1.09004 * 109.46631 * 305.02374 * 14 13 3 33 33 H 1.09001 * 109.47252 * 65.01791 * 14 13 3 34 34 H 1.07998 * 119.88976 * 0.02562 * 16 15 14 35 35 H 1.07997 * 120.05596 * 180.02562 * 17 16 15 36 36 H 1.08007 * 120.04944 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4438 0.0884 5 6 1.4403 2.1874 1.1648 6 1 0.7567 3.0048 0.9888 7 6 1.7642 1.8252 2.4551 8 7 2.6773 0.9034 2.6697 9 14 0.9062 2.6439 3.8984 10 1 1.6700 3.8492 4.3093 11 1 -0.4673 3.0412 3.4971 12 1 0.8337 1.6920 5.0359 13 7 1.6500 2.0997 -1.2546 14 6 2.5595 1.7302 -2.3473 15 6 2.2047 2.5155 -3.5835 16 6 2.7982 3.7442 -3.8142 17 6 2.4782 4.4695 -4.9455 18 6 1.5595 3.9653 -5.8521 19 8 1.0591 4.4364 -7.0219 20 6 0.1866 3.5346 -7.5005 21 8 -0.4428 3.6447 -8.5340 22 8 0.1196 2.4920 -6.6568 23 6 0.9620 2.7286 -5.6199 24 6 1.2922 2.0040 -4.4859 25 1 -0.3633 -1.0238 0.0897 26 1 -0.3635 0.5895 0.8416 27 1 -0.3633 0.4341 -0.9315 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.0721 0.4284 1.9218 31 1 0.6930 1.8858 -1.4926 32 1 3.5860 1.9539 -2.0569 33 1 2.4646 0.6642 -2.5543 34 1 3.5145 4.1369 -3.1078 35 1 2.9432 5.4279 -5.1230 36 1 0.8336 1.0430 -4.3053 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894468689.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:18 Heat of formation + Delta-G solvation = -70.149317 kcal Electronic energy + Delta-G solvation = -20878.165368 eV Core-core repulsion = 17521.672029 eV Total energy + Delta-G solvation = -3356.493339 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.22083 -39.35752 -38.14993 -38.06803 -36.69578 -33.28059 -31.42868 -30.89233 -29.65841 -26.47836 -24.65082 -24.25721 -23.76408 -23.67908 -22.37038 -19.63945 -19.10794 -18.41603 -18.26996 -17.25634 -16.77926 -15.43853 -15.28234 -15.09627 -14.45336 -14.40931 -14.36885 -13.86291 -13.81668 -13.63909 -13.35518 -12.73689 -12.64219 -12.19627 -11.95174 -11.64745 -11.60349 -11.38407 -11.15928 -10.80916 -10.37874 -10.20457 -10.14339 -9.97039 -9.25906 -8.84455 -8.71139 -8.31319 -7.52891 -6.37157 -4.08119 0.67570 0.70854 1.74596 1.82340 2.19459 3.16228 3.41497 3.44219 3.59831 3.86889 4.30698 4.46897 4.58556 4.76537 4.90318 4.94314 5.20762 5.33861 5.45048 5.53505 5.66061 5.81245 5.87983 5.98953 6.03843 6.19211 6.21669 6.30506 6.56374 6.71508 6.80858 6.84960 6.91453 7.12077 7.21657 7.73796 8.11678 8.28276 8.54593 8.84352 9.60196 10.99067 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.031417 B = 0.003562 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.027373 B = 7858.947052 C = 8042.738332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.155 4.155 3 C 0.204 3.796 4 H 0.029 0.971 5 C -0.573 4.573 6 H 0.056 0.944 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 1.069 2.931 10 H -0.289 1.289 11 H -0.288 1.288 12 H -0.286 1.286 13 N -0.670 5.670 14 C 0.091 3.909 15 C -0.039 4.039 16 C -0.073 4.073 17 C -0.073 4.073 18 C 0.003 3.997 19 O -0.237 6.237 20 C 0.591 3.409 21 O -0.422 6.422 22 O -0.236 6.236 23 C 0.014 3.986 24 C -0.073 4.073 25 H 0.028 0.972 26 H 0.073 0.927 27 H 0.032 0.968 28 H 0.022 0.978 29 H 0.068 0.932 30 H 0.269 0.731 31 H 0.331 0.669 32 H 0.084 0.916 33 H 0.036 0.964 34 H 0.153 0.847 35 H 0.146 0.854 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.255 2.885 -13.572 13.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.194 4.194 3 C 0.096 3.904 4 H 0.047 0.953 5 C -0.611 4.611 6 H 0.074 0.926 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.897 3.103 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.212 1.212 13 N -0.301 5.301 14 C -0.038 4.038 15 C -0.040 4.040 16 C -0.091 4.091 17 C -0.092 4.092 18 C -0.040 4.040 19 O -0.150 6.150 20 C 0.399 3.601 21 O -0.314 6.314 22 O -0.149 6.149 23 C -0.030 4.030 24 C -0.092 4.092 25 H 0.047 0.953 26 H 0.092 0.908 27 H 0.051 0.949 28 H 0.040 0.960 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.150 0.850 32 H 0.102 0.898 33 H 0.054 0.946 34 H 0.170 0.830 35 H 0.164 0.836 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.186 3.607 -12.364 12.881 hybrid contribution -0.436 -1.042 -2.133 2.413 sum -0.250 2.565 -14.497 14.725 Atomic orbital electron populations 1.21603 0.96696 0.99259 1.01428 1.22284 0.96254 1.01324 0.99583 1.19389 0.95822 0.88449 0.86737 0.95286 1.21808 1.30211 1.18175 0.90928 0.92566 1.25708 0.95741 0.97010 1.00027 1.70790 1.24513 1.24394 1.35648 0.83539 0.75580 0.75731 0.75410 1.21536 1.21461 1.21210 1.60855 1.04903 1.62340 1.01987 1.20967 0.99168 0.95311 0.88399 1.19982 0.93917 0.95041 0.95042 1.21092 0.99536 0.93234 0.95276 1.20092 0.95900 1.01390 0.91795 1.19588 1.02116 0.94247 0.88091 1.85233 1.52021 1.43734 1.34026 1.21459 0.78752 0.76299 0.83631 1.91280 1.45303 1.75847 1.18971 1.85247 1.56810 1.41958 1.30919 1.19516 0.95250 0.96349 0.91902 1.19992 0.98684 1.00658 0.89843 0.95254 0.90783 0.94920 0.95971 0.91347 0.91890 0.85018 0.89783 0.94580 0.82981 0.83576 0.83838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 9.38 37.16 0.35 -2.18 16 2 C -0.15 -3.18 5.45 -26.73 -0.15 -3.33 16 3 C 0.20 4.49 1.95 -68.86 -0.13 4.36 16 4 H 0.03 0.71 7.32 -51.93 -0.38 0.33 16 5 C -0.57 -14.55 7.19 -34.44 -0.25 -14.80 16 6 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 7 C 0.02 0.50 5.29 -17.82 -0.09 0.41 16 8 N -0.92 -25.66 13.20 55.43 0.73 -24.93 16 9 Si 1.07 23.97 29.91 -169.99 -5.08 18.88 16 10 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.67 -12.14 6.18 -109.22 -0.67 -12.82 16 14 C 0.09 1.29 5.60 -4.98 -0.03 1.26 16 15 C -0.04 -0.46 5.44 -104.61 -0.57 -1.03 16 16 C -0.07 -0.76 9.69 -39.56 -0.38 -1.14 16 17 C -0.07 -0.72 10.06 -39.50 -0.40 -1.11 16 18 C 0.00 0.04 7.35 -39.07 -0.29 -0.25 16 19 O -0.24 -2.99 10.79 -31.01 -0.33 -3.32 16 20 C 0.59 8.02 9.67 101.05 0.98 9.00 16 21 O -0.42 -6.57 18.04 -27.23 -0.49 -7.06 16 22 O -0.24 -3.10 10.79 -31.00 -0.33 -3.44 16 23 C 0.01 0.17 7.35 -39.07 -0.29 -0.12 16 24 C -0.07 -0.84 9.71 -39.50 -0.38 -1.22 16 25 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 26 H 0.07 1.58 6.88 -51.93 -0.36 1.23 16 27 H 0.03 0.55 6.68 -51.93 -0.35 0.20 16 28 H 0.02 0.40 7.13 -51.93 -0.37 0.03 16 29 H 0.07 1.59 6.17 -51.93 -0.32 1.27 16 30 H 0.27 7.41 5.62 -40.82 -0.23 7.18 16 31 H 0.33 5.85 6.79 -39.29 -0.27 5.58 16 32 H 0.08 1.19 7.89 -51.93 -0.41 0.78 16 33 H 0.04 0.49 7.13 -51.93 -0.37 0.12 16 34 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.14 1.48 8.06 -52.48 -0.42 1.05 16 LS Contribution 306.09 15.07 4.61 4.61 Total: -1.00 -28.36 306.09 -7.15 -35.51 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -3.95 Total: 2.72 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -1.63 Total: -10.16 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.06 Total: -37.75 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -1.16 Total: -13.82 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -5.08 Total: 18.88 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.36 -7.15 -35.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894468689.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.635 kcal (2) G-P(sol) polarization free energy of solvation -28.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds