Wall clock time and date at job start Mon Mar 30 2020 01:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46933 * 2 1 4 4 H 1.09001 * 109.47334 * 175.06299 * 3 2 1 5 5 C 1.50704 * 109.47437 * 55.06307 * 3 2 1 6 6 H 1.07998 * 120.00114 * 245.70497 * 5 3 2 7 7 C 1.37884 * 119.99779 * 65.69390 * 5 3 2 8 8 N 1.31510 * 119.99718 * 5.50636 * 7 5 3 9 9 Si 1.86800 * 120.00056 * 185.49846 * 7 5 3 10 10 H 1.48490 * 109.47046 * 270.00622 * 9 7 5 11 11 H 1.48504 * 109.46887 * 30.00607 * 9 7 5 12 12 H 1.48498 * 109.46881 * 150.00018 * 9 7 5 13 13 N 1.46901 * 109.47054 * 295.06357 * 3 2 1 14 14 C 1.46897 * 111.00188 * 279.83083 * 13 3 2 15 15 C 1.50695 * 109.47193 * 185.02592 * 14 13 3 16 16 C 1.38382 * 119.89792 * 89.99947 * 15 14 13 17 17 C 1.38140 * 120.21847 * 179.97438 * 16 15 14 18 18 C 1.38567 * 119.89174 * 0.02562 * 17 16 15 19 19 O 1.35678 * 133.02534 * 180.02562 * 18 17 16 20 20 C 1.34296 * 108.28368 * 179.97438 * 19 18 17 21 21 O 1.21507 * 125.36328 * 179.97438 * 20 19 18 22 22 O 1.34290 * 109.26283 * 359.97438 * 20 19 18 23 23 C 1.35680 * 108.28629 * 0.02562 * 22 20 19 24 24 C 1.38146 * 119.89156 * 269.72275 * 15 14 13 25 25 H 1.09007 * 109.46745 * 185.00714 * 1 2 3 26 26 H 1.08997 * 109.47944 * 305.01014 * 1 2 3 27 27 H 1.09004 * 109.46980 * 65.01711 * 1 2 3 28 28 H 1.08999 * 109.47662 * 239.99923 * 2 1 3 29 29 H 1.09002 * 109.47173 * 119.99574 * 2 1 3 30 30 H 0.97000 * 120.00360 * 355.14166 * 8 7 5 31 31 H 1.00908 * 110.99960 * 43.78725 * 13 3 2 32 32 H 1.09004 * 109.46631 * 305.02374 * 14 13 3 33 33 H 1.09001 * 109.47252 * 65.01791 * 14 13 3 34 34 H 1.07998 * 119.88976 * 0.02562 * 16 15 14 35 35 H 1.07997 * 120.05596 * 180.02562 * 17 16 15 36 36 H 1.08007 * 120.04944 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4438 0.0884 5 6 1.4403 2.1874 1.1648 6 1 0.7567 3.0048 0.9888 7 6 1.7642 1.8252 2.4551 8 7 2.6773 0.9034 2.6697 9 14 0.9062 2.6439 3.8984 10 1 1.6700 3.8492 4.3093 11 1 -0.4673 3.0412 3.4971 12 1 0.8337 1.6920 5.0359 13 7 1.6500 2.0997 -1.2546 14 6 2.5595 1.7302 -2.3473 15 6 2.2047 2.5155 -3.5835 16 6 2.7982 3.7442 -3.8142 17 6 2.4782 4.4695 -4.9455 18 6 1.5595 3.9653 -5.8521 19 8 1.0591 4.4364 -7.0219 20 6 0.1866 3.5346 -7.5005 21 8 -0.4428 3.6447 -8.5340 22 8 0.1196 2.4920 -6.6568 23 6 0.9620 2.7286 -5.6199 24 6 1.2922 2.0040 -4.4859 25 1 -0.3633 -1.0238 0.0897 26 1 -0.3635 0.5895 0.8416 27 1 -0.3633 0.4341 -0.9315 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.0721 0.4284 1.9218 31 1 0.6930 1.8858 -1.4926 32 1 3.5860 1.9539 -2.0569 33 1 2.4646 0.6642 -2.5543 34 1 3.5145 4.1369 -3.1078 35 1 2.9432 5.4279 -5.1230 36 1 0.8336 1.0430 -4.3053 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894468689.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:18 Heat of formation + Delta-G solvation = -85.643363 kcal Electronic energy + Delta-G solvation = -20878.837240 eV Core-core repulsion = 17521.672029 eV Total energy + Delta-G solvation = -3357.165211 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.20748 -40.36347 -39.23167 -39.13837 -38.18215 -34.82332 -32.94627 -31.90144 -30.88601 -28.02294 -26.08672 -25.37521 -25.26740 -24.71337 -23.42158 -21.35154 -20.08863 -19.43694 -19.27394 -18.74655 -18.15345 -16.63778 -16.29524 -16.27588 -15.89738 -15.50147 -15.43413 -15.24743 -15.01394 -14.91567 -14.81724 -14.20806 -13.96064 -13.50673 -13.24368 -13.01108 -12.70255 -12.66673 -12.58662 -12.37482 -11.98656 -11.89919 -11.84868 -11.62718 -10.62353 -10.29786 -10.12134 -9.76463 -9.00985 -8.43514 -6.14489 -0.24696 -0.17610 0.71683 0.81392 1.23767 1.59795 1.66281 1.83236 2.26738 2.64237 2.98676 3.32011 3.34311 3.53193 3.82891 3.92337 4.03204 4.09170 4.36699 4.40184 4.53195 4.55569 4.68320 4.70457 4.82094 4.95294 4.98666 5.16469 5.26782 5.29925 5.39360 5.45455 5.60487 5.66990 5.85487 6.00997 6.27901 6.60174 6.76136 6.85587 7.60458 8.93546 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.031417 B = 0.003562 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.027373 B = 7858.947052 C = 8042.738332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.147 4.147 3 C 0.208 3.792 4 H 0.003 0.997 5 C -0.572 4.572 6 H 0.045 0.955 7 C -0.027 4.027 8 N -0.945 5.945 9 Si 1.106 2.894 10 H -0.280 1.280 11 H -0.274 1.274 12 H -0.291 1.291 13 N -0.675 5.675 14 C 0.095 3.905 15 C -0.046 4.046 16 C -0.068 4.068 17 C -0.060 4.060 18 C -0.003 4.003 19 O -0.235 6.235 20 C 0.596 3.404 21 O -0.448 6.448 22 O -0.239 6.239 23 C -0.001 4.001 24 C -0.068 4.068 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.036 0.964 30 H 0.262 0.738 31 H 0.335 0.665 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.167 0.833 35 H 0.177 0.823 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.100 3.594 -14.281 14.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.187 4.187 3 C 0.099 3.901 4 H 0.021 0.979 5 C -0.611 4.611 6 H 0.064 0.936 7 C -0.225 4.225 8 N -0.584 5.584 9 Si 0.931 3.069 10 H -0.206 1.206 11 H -0.199 1.199 12 H -0.217 1.217 13 N -0.306 5.306 14 C -0.034 4.034 15 C -0.047 4.047 16 C -0.086 4.086 17 C -0.078 4.078 18 C -0.047 4.047 19 O -0.148 6.148 20 C 0.405 3.595 21 O -0.342 6.342 22 O -0.153 6.153 23 C -0.044 4.044 24 C -0.087 4.087 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.154 0.846 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.185 0.815 35 H 0.195 0.805 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.034 4.324 -13.089 13.785 hybrid contribution -0.341 -1.246 -1.961 2.348 sum -0.307 3.079 -15.050 15.365 Atomic orbital electron populations 1.21521 0.95365 1.00088 1.01421 1.22146 0.97349 1.00080 0.99166 1.19125 0.93930 0.89227 0.87769 0.97887 1.22089 1.29236 1.17584 0.92197 0.93637 1.26798 0.95843 0.97134 1.02759 1.70881 1.26201 1.25894 1.35443 0.83040 0.75629 0.75176 0.73091 1.20648 1.19868 1.21665 1.60672 1.05772 1.62227 1.01913 1.20921 0.98221 0.96258 0.87954 1.19765 0.94908 0.95632 0.94362 1.21305 0.99199 0.92551 0.95576 1.20392 0.94694 1.02205 0.90522 1.19901 1.02548 0.94225 0.88029 1.85220 1.51733 1.43413 1.34423 1.21373 0.78514 0.76308 0.83346 1.91258 1.46378 1.76472 1.20053 1.85221 1.57069 1.41794 1.31168 1.19644 0.95732 0.96977 0.92085 1.20050 0.98300 1.01018 0.89353 0.93526 0.93526 0.92610 0.93578 0.94482 0.92746 0.84593 0.89879 0.93724 0.81542 0.80523 0.82733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 9.38 71.98 0.68 -3.96 16 2 C -0.15 -5.96 5.45 30.59 0.17 -5.80 16 3 C 0.21 9.11 1.95 44.17 0.09 9.20 16 4 H 0.00 0.16 7.32 -2.39 -0.02 0.14 16 5 C -0.57 -29.07 7.19 25.60 0.18 -28.88 16 6 H 0.05 2.37 7.82 -2.91 -0.02 2.34 16 7 C -0.03 -1.44 5.29 84.66 0.45 -0.99 16 8 N -0.94 -53.81 13.20 21.45 0.28 -53.53 16 9 Si 1.11 48.17 29.91 68.60 2.05 50.23 16 10 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 12 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 13 N -0.67 -23.43 6.18 -499.46 -3.09 -26.52 16 14 C 0.10 2.51 5.60 85.56 0.48 2.99 16 15 C -0.05 -0.98 5.44 -19.85 -0.11 -1.09 16 16 C -0.07 -1.22 9.69 22.28 0.22 -1.00 16 17 C -0.06 -0.98 10.06 22.32 0.22 -0.75 16 18 C 0.00 -0.07 7.35 22.60 0.17 0.10 16 19 O -0.23 -5.54 10.79 14.68 0.16 -5.38 16 20 C 0.60 15.64 9.67 113.37 1.10 16.73 16 21 O -0.45 -13.77 18.04 27.42 0.49 -13.28 16 22 O -0.24 -6.01 10.79 14.72 0.16 -5.85 16 23 C 0.00 -0.02 7.35 22.60 0.17 0.14 16 24 C -0.07 -1.42 9.71 22.33 0.22 -1.20 16 25 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 26 H 0.05 1.95 6.88 -2.39 -0.02 1.94 16 27 H 0.05 1.76 6.68 -2.38 -0.02 1.74 16 28 H 0.05 1.62 7.13 -2.39 -0.02 1.60 16 29 H 0.04 1.73 6.17 -2.39 -0.01 1.71 16 30 H 0.26 14.80 5.62 -92.71 -0.52 14.28 16 31 H 0.34 11.14 6.79 -89.69 -0.61 10.53 16 32 H 0.08 2.21 7.89 -2.38 -0.02 2.19 16 33 H 0.04 1.12 7.13 -2.39 -0.02 1.10 16 34 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -61.09 306.09 4.84 -56.25 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.76 Total: 12.59 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 4.02 Total: -14.51 kcal Atomic # 7 Polarization: -77.24 SS G_CDS: -2.80 Total: -80.05 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: 0.81 Total: -24.50 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.05 Total: 50.23 kcal Total: -61.09 4.84 -56.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894468689.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.396 kcal (2) G-P(sol) polarization free energy of solvation -61.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds