Wall clock time and date at job start Mon Mar 30 2020 01:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33000 * 119.99549 * 2 1 4 4 C 1.47098 * 119.99760 * 172.35044 * 3 2 1 5 5 O 1.21619 * 120.00179 * 353.99701 * 4 3 2 6 6 N 1.34778 * 119.99952 * 173.99818 * 4 3 2 7 7 C 1.46499 * 119.99943 * 179.97438 * 6 4 3 8 8 H 1.08996 * 109.47464 * 325.00215 * 7 6 4 9 9 C 1.50701 * 109.46987 * 205.00022 * 7 6 4 10 10 H 1.07992 * 120.00302 * 0.02562 * 9 7 6 11 11 C 1.37881 * 119.99547 * 180.02562 * 9 7 6 12 12 N 1.31510 * 120.00629 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 119.99554 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47235 * 59.99953 * 13 11 9 15 15 H 1.48506 * 109.46879 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47229 * 299.99750 * 13 11 9 17 17 C 1.53006 * 109.47024 * 85.00279 * 7 6 4 18 18 F 1.39899 * 109.46845 * 59.99783 * 17 7 6 19 19 F 1.39892 * 109.47100 * 179.97438 * 17 7 6 20 20 F 1.39901 * 109.46805 * 299.99832 * 17 7 6 21 21 C 1.50698 * 120.00278 * 179.97438 * 2 1 3 22 22 C 1.52994 * 117.49738 * 356.61562 * 21 2 1 23 23 C 1.52996 * 117.49913 * 287.99060 * 21 2 1 24 24 H 1.09006 * 109.46893 * 269.99751 * 1 2 3 25 25 H 1.08994 * 109.47639 * 30.00191 * 1 2 3 26 26 H 1.09000 * 109.47268 * 150.00297 * 1 2 3 27 27 H 1.07999 * 120.00084 * 352.34232 * 3 2 1 28 28 H 0.97000 * 120.00065 * 359.97438 * 6 4 3 29 29 H 0.96991 * 120.00577 * 179.97438 * 12 11 9 30 30 H 1.09008 * 115.54692 * 142.32152 * 21 2 1 31 31 H 1.09004 * 117.50370 * 359.97438 * 22 21 2 32 32 H 1.09005 * 117.50112 * 145.01755 * 22 21 2 33 33 H 1.08999 * 117.50020 * 214.97703 * 23 21 2 34 34 H 1.09000 * 117.49906 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1519 0.0000 4 6 3.6330 1.1576 0.1696 5 8 4.2204 0.1221 0.4186 6 7 4.3209 2.3103 0.0491 7 6 5.7761 2.3161 0.2185 8 1 6.0561 1.5888 0.9804 9 6 6.2266 3.6894 0.6453 10 1 5.5016 4.4788 0.7775 11 6 7.5646 3.9380 0.8669 12 7 8.4476 2.9770 0.7054 13 14 8.1230 5.6401 1.3966 14 1 7.4739 5.9957 2.6841 15 1 9.5981 5.6460 1.5683 16 1 7.7409 6.6316 0.3592 17 6 6.4454 1.9490 -1.1075 18 9 6.0860 2.8826 -2.0854 19 9 7.8349 1.9551 -0.9459 20 9 6.0271 0.6741 -1.5037 21 6 2.2605 -1.3050 0.0006 22 6 1.4406 -2.5942 0.0813 23 6 2.2508 -2.1258 1.2917 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6391 2.0830 -0.1246 28 1 3.8525 3.1361 -0.1499 29 1 9.3889 3.1519 0.8610 30 1 3.1697 -1.3232 -0.6006 31 1 0.3560 -2.4984 0.1344 32 1 1.8100 -3.4609 -0.4669 33 1 3.1533 -2.6844 1.5398 34 1 1.6997 -1.7217 2.1409 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928812741.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:27 Heat of formation + Delta-G solvation = -135.137101 kcal Electronic energy + Delta-G solvation = -22487.159536 eV Core-core repulsion = 18585.991375 eV Total energy + Delta-G solvation = -3901.168161 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.31837 -45.97364 -45.58509 -39.28491 -37.39750 -34.56779 -33.20394 -32.48901 -28.97360 -27.34926 -24.55470 -23.33138 -22.18376 -21.54582 -20.03280 -18.56173 -17.30354 -16.78647 -16.62843 -16.40376 -15.76339 -15.37932 -14.83259 -14.50917 -13.98472 -13.55201 -13.23897 -13.05184 -12.88524 -12.73707 -12.48327 -12.37730 -12.27131 -12.14058 -11.93701 -11.78161 -11.39886 -11.17316 -11.06369 -10.86419 -10.80459 -10.55575 -10.37512 -10.15232 -9.64718 -8.95986 -8.70358 -8.67538 -8.13489 -6.21854 -4.45769 1.63524 3.20642 3.25436 3.27112 3.80910 3.96059 4.16160 4.24547 4.61095 4.70997 4.94904 4.98461 5.17614 5.22554 5.29008 5.52028 5.56546 5.70751 5.71178 5.85725 5.89421 5.91215 6.04003 6.25387 6.27423 6.47274 6.53186 6.74486 7.01784 7.26461 7.51287 7.65238 8.42621 8.52613 8.99729 9.22401 10.69690 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.027682 B = 0.005307 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.231222 B = 5275.076527 C = 5573.699428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.021 4.021 3 C -0.212 4.212 4 C 0.534 3.466 5 O -0.532 6.532 6 N -0.710 5.710 7 C 0.246 3.754 8 H 0.085 0.915 9 C -0.552 4.552 10 H 0.076 0.924 11 C 0.065 3.935 12 N -0.840 5.840 13 Si 0.915 3.085 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.273 1.273 17 C 0.417 3.583 18 F -0.210 7.210 19 F -0.137 7.137 20 F -0.218 7.218 21 C -0.106 4.106 22 C -0.195 4.195 23 C -0.152 4.152 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.124 0.876 28 H 0.398 0.602 29 H 0.268 0.732 30 H 0.130 0.870 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.547 -3.954 -1.114 13.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.023 4.023 3 C -0.233 4.233 4 C 0.322 3.678 5 O -0.410 6.410 6 N -0.358 5.358 7 C 0.140 3.860 8 H 0.102 0.898 9 C -0.589 4.589 10 H 0.094 0.906 11 C -0.144 4.144 12 N -0.474 5.474 13 Si 0.741 3.259 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.198 1.198 17 C 0.361 3.639 18 F -0.192 7.192 19 F -0.119 7.119 20 F -0.200 7.200 21 C -0.123 4.123 22 C -0.232 4.232 23 C -0.189 4.189 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.142 0.858 28 H 0.231 0.769 29 H 0.079 0.921 30 H 0.148 0.852 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.858 -4.748 -0.941 12.808 hybrid contribution 0.323 1.340 -0.182 1.390 sum -11.535 -3.409 -1.124 12.080 Atomic orbital electron populations 1.20971 0.91479 1.03052 1.02533 1.21699 0.94855 0.93459 0.92262 1.22505 0.94142 0.98306 1.08363 1.18556 0.87515 0.84003 0.77694 1.90755 1.70918 1.31322 1.48045 1.46000 1.08726 1.09853 1.71263 1.19673 0.75847 1.01239 0.89256 0.89790 1.20854 0.93550 0.94294 1.50225 0.90564 1.25084 0.96299 0.98510 0.94511 1.70387 1.02743 1.31968 1.42267 0.86281 0.77649 0.82720 0.79234 1.19803 1.20879 1.19835 1.23152 0.79959 0.72196 0.88602 1.92984 1.92186 1.67001 1.67018 1.93400 1.28237 1.95627 1.94594 1.93061 1.90642 1.43449 1.92852 1.21297 1.00301 0.87951 1.02797 1.23144 0.98216 0.98565 1.03285 1.22748 1.01893 1.02792 0.91514 0.90677 0.91202 0.91039 0.85788 0.76873 0.92098 0.85225 0.88949 0.88963 0.88640 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.45 36.00 0.34 -0.85 16 2 C -0.02 -0.29 5.80 -101.17 -0.59 -0.87 16 3 C -0.21 -3.23 9.63 -37.81 -0.36 -3.59 16 4 C 0.53 10.67 7.21 -12.67 -0.09 10.58 16 5 O -0.53 -12.16 12.02 5.26 0.06 -12.09 16 6 N -0.71 -14.76 4.98 -56.12 -0.28 -15.04 16 7 C 0.25 6.17 2.21 -69.08 -0.15 6.01 16 8 H 0.08 2.36 7.58 -51.93 -0.39 1.96 16 9 C -0.55 -14.21 8.47 -34.44 -0.29 -14.51 16 10 H 0.08 1.85 7.74 -52.49 -0.41 1.44 16 11 C 0.06 1.70 5.20 -17.82 -0.09 1.60 16 12 N -0.84 -23.24 9.50 55.43 0.53 -22.71 16 13 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 16 14 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 17 C 0.42 10.84 2.81 37.16 0.10 10.94 16 18 F -0.21 -5.27 16.94 2.25 0.04 -5.23 16 19 F -0.14 -3.85 12.91 2.25 0.03 -3.82 16 20 F -0.22 -5.60 15.67 2.25 0.04 -5.56 16 21 C -0.11 -1.58 4.12 -91.78 -0.38 -1.96 16 22 C -0.20 -2.27 9.77 -26.73 -0.26 -2.53 16 23 C -0.15 -2.07 10.22 -26.73 -0.27 -2.35 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.58 8.06 -51.93 -0.42 0.16 16 26 H 0.07 0.61 6.46 -51.93 -0.34 0.27 16 27 H 0.12 1.52 8.04 -52.49 -0.42 1.09 16 28 H 0.40 7.17 8.52 -40.82 -0.35 6.82 16 29 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.13 2.36 6.62 -51.92 -0.34 2.01 16 31 H 0.09 0.90 6.36 -51.93 -0.33 0.57 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 298.00 15.07 4.49 4.49 Total: -1.00 -29.75 298.00 -5.99 -35.73 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -3.82 Total: 6.57 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -2.05 Total: 2.48 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.25 Total: -37.75 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.06 Total: -12.09 kcal Atomic # 9 Polarization: -14.72 SS G_CDS: 0.10 Total: -14.61 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.75 -5.99 -35.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928812741.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.403 kcal (2) G-P(sol) polarization free energy of solvation -29.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds