Wall clock time and date at job start Mon Mar 30 2020 01:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33000 * 119.99549 * 2 1 4 4 C 1.47098 * 119.99760 * 172.35044 * 3 2 1 5 5 O 1.21619 * 120.00179 * 353.99701 * 4 3 2 6 6 N 1.34778 * 119.99952 * 173.99818 * 4 3 2 7 7 C 1.46499 * 119.99943 * 179.97438 * 6 4 3 8 8 H 1.08996 * 109.47464 * 325.00215 * 7 6 4 9 9 C 1.50701 * 109.46987 * 205.00022 * 7 6 4 10 10 H 1.07992 * 120.00302 * 0.02562 * 9 7 6 11 11 C 1.37881 * 119.99547 * 180.02562 * 9 7 6 12 12 N 1.31510 * 120.00629 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 119.99554 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47235 * 59.99953 * 13 11 9 15 15 H 1.48506 * 109.46879 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47229 * 299.99750 * 13 11 9 17 17 C 1.53006 * 109.47024 * 85.00279 * 7 6 4 18 18 F 1.39899 * 109.46845 * 59.99783 * 17 7 6 19 19 F 1.39892 * 109.47100 * 179.97438 * 17 7 6 20 20 F 1.39901 * 109.46805 * 299.99832 * 17 7 6 21 21 C 1.50698 * 120.00278 * 179.97438 * 2 1 3 22 22 C 1.52994 * 117.49738 * 356.61562 * 21 2 1 23 23 C 1.52996 * 117.49913 * 287.99060 * 21 2 1 24 24 H 1.09006 * 109.46893 * 269.99751 * 1 2 3 25 25 H 1.08994 * 109.47639 * 30.00191 * 1 2 3 26 26 H 1.09000 * 109.47268 * 150.00297 * 1 2 3 27 27 H 1.07999 * 120.00084 * 352.34232 * 3 2 1 28 28 H 0.97000 * 120.00065 * 359.97438 * 6 4 3 29 29 H 0.96991 * 120.00577 * 179.97438 * 12 11 9 30 30 H 1.09008 * 115.54692 * 142.32152 * 21 2 1 31 31 H 1.09004 * 117.50370 * 359.97438 * 22 21 2 32 32 H 1.09005 * 117.50112 * 145.01755 * 22 21 2 33 33 H 1.08999 * 117.50020 * 214.97703 * 23 21 2 34 34 H 1.09000 * 117.49906 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1519 0.0000 4 6 3.6330 1.1576 0.1696 5 8 4.2204 0.1221 0.4186 6 7 4.3209 2.3103 0.0491 7 6 5.7761 2.3161 0.2185 8 1 6.0561 1.5888 0.9804 9 6 6.2266 3.6894 0.6453 10 1 5.5016 4.4788 0.7775 11 6 7.5646 3.9380 0.8669 12 7 8.4476 2.9770 0.7054 13 14 8.1230 5.6401 1.3966 14 1 7.4739 5.9957 2.6841 15 1 9.5981 5.6460 1.5683 16 1 7.7409 6.6316 0.3592 17 6 6.4454 1.9490 -1.1075 18 9 6.0860 2.8826 -2.0854 19 9 7.8349 1.9551 -0.9459 20 9 6.0271 0.6741 -1.5037 21 6 2.2605 -1.3050 0.0006 22 6 1.4406 -2.5942 0.0813 23 6 2.2508 -2.1258 1.2917 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6391 2.0830 -0.1246 28 1 3.8525 3.1361 -0.1499 29 1 9.3889 3.1519 0.8610 30 1 3.1697 -1.3232 -0.6006 31 1 0.3560 -2.4984 0.1344 32 1 1.8100 -3.4609 -0.4669 33 1 3.1533 -2.6844 1.5398 34 1 1.6997 -1.7217 2.1409 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928812741.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:27 Heat of formation + Delta-G solvation = -153.274901 kcal Electronic energy + Delta-G solvation = -22487.946050 eV Core-core repulsion = 18585.991375 eV Total energy + Delta-G solvation = -3901.954675 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.43310 -48.06987 -47.74377 -40.75792 -38.62725 -36.38704 -34.47730 -34.20862 -30.65985 -28.54480 -26.59489 -24.64832 -23.37930 -23.08440 -21.67838 -20.01906 -19.03643 -18.81047 -18.67208 -18.03287 -17.48899 -16.92239 -16.53935 -15.86699 -15.50804 -15.06679 -14.98498 -14.66200 -14.48755 -14.36789 -14.31499 -14.05263 -14.04226 -13.90964 -13.70990 -13.13866 -12.99301 -12.77274 -12.61662 -12.42989 -12.20285 -12.06696 -11.67306 -11.57825 -11.26133 -10.68516 -10.44289 -10.07022 -9.68621 -8.21767 -6.53055 0.44269 1.45636 1.48389 1.56813 2.25076 2.30789 2.49824 2.59000 2.93584 3.08529 3.65888 3.75286 3.84188 3.93649 4.07353 4.16409 4.25676 4.31587 4.48775 4.71776 4.75727 4.88547 4.93591 4.99050 5.13738 5.27215 5.30081 5.45675 5.48311 5.56631 5.65747 5.74625 6.51892 6.84571 7.16877 7.47075 8.70811 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.027682 B = 0.005307 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.231222 B = 5275.076527 C = 5573.699428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.002 3.998 3 C -0.237 4.237 4 C 0.524 3.476 5 O -0.571 6.571 6 N -0.707 5.707 7 C 0.254 3.746 8 H 0.044 0.956 9 C -0.563 4.563 10 H 0.091 0.909 11 C 0.014 3.986 12 N -0.876 5.876 13 Si 0.984 3.016 14 H -0.262 1.262 15 H -0.284 1.284 16 H -0.265 1.265 17 C 0.414 3.586 18 F -0.204 7.204 19 F -0.151 7.151 20 F -0.220 7.220 21 C -0.140 4.140 22 C -0.159 4.159 23 C -0.163 4.163 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.159 0.841 28 H 0.412 0.588 29 H 0.268 0.732 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.390 -3.028 -0.993 15.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.001 3.999 3 C -0.258 4.258 4 C 0.316 3.684 5 O -0.452 6.452 6 N -0.357 5.357 7 C 0.146 3.854 8 H 0.062 0.938 9 C -0.600 4.600 10 H 0.109 0.891 11 C -0.192 4.192 12 N -0.510 5.510 13 Si 0.807 3.193 14 H -0.186 1.186 15 H -0.209 1.209 16 H -0.190 1.190 17 C 0.358 3.642 18 F -0.186 7.186 19 F -0.133 7.133 20 F -0.202 7.202 21 C -0.158 4.158 22 C -0.195 4.195 23 C -0.200 4.200 24 H 0.112 0.888 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.176 0.824 28 H 0.248 0.752 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.143 0.857 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.744 -3.812 -0.831 15.252 hybrid contribution 1.188 0.901 -0.245 1.511 sum -13.557 -2.911 -1.075 13.907 Atomic orbital electron populations 1.21088 0.87549 1.04891 1.04161 1.22157 0.97283 0.91998 0.88508 1.22477 0.90920 1.00641 1.11762 1.19455 0.89621 0.82914 0.76437 1.90741 1.72245 1.32533 1.49714 1.45889 1.06956 1.11137 1.71764 1.19238 0.78420 1.00078 0.87651 0.93843 1.21216 0.94127 0.94656 1.49954 0.89073 1.26033 0.96413 1.02419 0.94291 1.70528 1.02965 1.34136 1.43398 0.85200 0.76988 0.77827 0.79243 1.18641 1.20947 1.18994 1.23333 0.79449 0.72217 0.89234 1.92979 1.92067 1.66733 1.66799 1.93371 1.29451 1.95704 1.94728 1.93053 1.90579 1.43652 1.92907 1.21225 1.00459 0.90608 1.03547 1.23255 0.99444 0.96381 1.00447 1.22783 1.02234 1.02855 0.92105 0.88799 0.89260 0.89370 0.82380 0.75220 0.92187 0.89520 0.85719 0.88335 0.90320 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 9.45 71.24 0.67 -1.08 16 2 C 0.00 0.06 5.80 -17.62 -0.10 -0.04 16 3 C -0.24 -6.91 9.63 23.43 0.23 -6.69 16 4 C 0.52 21.41 7.21 86.57 0.62 22.03 16 5 O -0.57 -27.50 12.02 -4.09 -0.05 -27.55 16 6 N -0.71 -29.86 4.98 -449.70 -2.24 -32.10 16 7 C 0.25 13.14 2.21 44.25 0.10 13.24 16 8 H 0.04 2.60 7.58 -2.39 -0.02 2.58 16 9 C -0.56 -29.13 8.47 25.60 0.22 -28.91 16 10 H 0.09 4.33 7.74 -2.91 -0.02 4.31 16 11 C 0.01 0.71 5.20 84.66 0.44 1.15 16 12 N -0.88 -49.63 9.50 21.45 0.20 -49.42 16 13 Si 0.98 41.09 29.54 68.60 2.03 43.12 16 14 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 15 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 16 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 17 C 0.41 22.16 2.81 71.98 0.20 22.37 16 18 F -0.20 -10.33 16.94 44.97 0.76 -9.57 16 19 F -0.15 -8.78 12.91 44.97 0.58 -8.20 16 20 F -0.22 -11.76 15.67 44.97 0.70 -11.05 16 21 C -0.14 -4.14 4.12 -11.54 -0.05 -4.18 16 22 C -0.16 -3.30 9.77 30.59 0.30 -3.00 16 23 C -0.16 -4.34 10.22 30.59 0.31 -4.02 16 24 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 25 H 0.09 1.03 8.06 -2.39 -0.02 1.01 16 26 H 0.09 1.03 6.46 -2.39 -0.02 1.02 16 27 H 0.16 3.40 8.04 -2.91 -0.02 3.38 16 28 H 0.41 14.64 8.52 -92.71 -0.79 13.85 16 29 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 30 H 0.09 3.34 6.62 -2.38 -0.02 3.32 16 31 H 0.12 1.82 6.36 -2.38 -0.02 1.80 16 32 H 0.10 1.93 8.14 -2.38 -0.02 1.92 16 33 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -67.33 298.00 5.28 -62.05 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.35 Total: 21.87 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 2.94 Total: 10.85 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -2.04 Total: -81.52 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.05 Total: -27.55 kcal Atomic # 9 Polarization: -30.86 SS G_CDS: 2.05 Total: -28.82 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -67.33 5.28 -62.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928812741.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.227 kcal (2) G-P(sol) polarization free energy of solvation -67.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds