Wall clock time and date at job start Mon Mar 30 2020 01:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32997 * 120.00045 * 2 1 4 4 C 1.47104 * 119.99990 * 172.95593 * 3 2 1 5 5 O 1.21614 * 119.99743 * 354.03269 * 4 3 2 6 6 N 1.34772 * 120.00142 * 174.03285 * 4 3 2 7 7 C 1.46495 * 120.00113 * 179.97438 * 6 4 3 8 8 H 1.08998 * 109.46900 * 35.00328 * 7 6 4 9 9 C 1.50706 * 109.46872 * 155.00335 * 7 6 4 10 10 H 1.07999 * 120.00078 * 359.97438 * 9 7 6 11 11 C 1.37878 * 119.99729 * 180.02562 * 9 7 6 12 12 N 1.31515 * 120.00033 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 119.99794 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47019 * 90.00021 * 13 11 9 15 15 H 1.48498 * 109.47171 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47227 * 329.99985 * 13 11 9 17 17 C 1.52994 * 109.47321 * 274.99867 * 7 6 4 18 18 F 1.39901 * 109.47510 * 300.00500 * 17 7 6 19 19 F 1.39895 * 109.47305 * 179.97438 * 17 7 6 20 20 F 1.39902 * 109.47109 * 60.00259 * 17 7 6 21 21 C 1.50699 * 120.00039 * 179.97438 * 2 1 3 22 22 C 1.53006 * 117.49806 * 1.65363 * 21 2 1 23 23 C 1.52997 * 117.50347 * 293.03097 * 21 2 1 24 24 H 1.09008 * 109.46786 * 90.00283 * 1 2 3 25 25 H 1.08994 * 109.47102 * 209.99822 * 1 2 3 26 26 H 1.08998 * 109.46934 * 330.00474 * 1 2 3 27 27 H 1.07999 * 120.00061 * 352.95148 * 3 2 1 28 28 H 0.97006 * 119.99998 * 0.02562 * 6 4 3 29 29 H 0.96996 * 119.99613 * 180.02562 * 12 11 9 30 30 H 1.08995 * 115.54941 * 147.35528 * 21 2 1 31 31 H 1.09002 * 117.49653 * 359.97438 * 22 21 2 32 32 H 1.08997 * 117.49684 * 145.02125 * 22 21 2 33 33 H 1.09002 * 117.50081 * 214.97852 * 23 21 2 34 34 H 1.09001 * 117.49563 * 359.97249 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6347 1.1566 0.1562 5 8 4.2242 0.1197 0.3937 6 7 4.3215 2.3100 0.0362 7 6 5.7781 2.3148 0.1923 8 1 6.1895 1.3885 -0.2086 9 6 6.3594 3.4876 -0.5546 10 1 5.7089 4.1616 -1.0922 11 6 7.7218 3.6994 -0.5525 12 7 8.5140 2.8784 0.1018 13 14 8.4425 5.1526 -1.4789 14 1 8.5083 6.3309 -0.5774 15 1 9.8094 4.8118 -1.9484 16 1 7.5826 5.4706 -2.6471 17 6 6.1316 2.4296 1.6765 18 9 5.6034 3.6184 2.1911 19 9 7.5225 2.4336 1.8256 20 9 5.5919 1.3409 2.3699 21 6 2.2605 -1.3051 0.0006 22 6 1.4389 -2.5952 -0.0380 23 6 2.1540 -2.1819 1.2499 24 1 -0.3633 -0.0001 -1.0278 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6382 2.0836 -0.1148 28 1 3.8512 3.1371 -0.1528 29 1 9.4724 3.0277 0.1035 30 1 3.2127 -1.2984 -0.5299 31 1 0.3533 -2.5000 -0.0634 32 1 1.8505 -3.4376 -0.5940 33 1 3.0360 -2.7523 1.5411 34 1 1.5393 -1.8145 2.0716 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928812742.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:30 Heat of formation + Delta-G solvation = -134.442830 kcal Electronic energy + Delta-G solvation = -22464.185177 eV Core-core repulsion = 18563.047122 eV Total energy + Delta-G solvation = -3901.138055 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.31265 -45.96609 -45.58081 -39.30819 -37.42260 -34.58117 -33.19939 -32.49484 -28.97247 -27.35727 -24.55437 -23.34818 -22.18047 -21.54062 -20.03161 -18.58720 -17.31243 -16.77885 -16.61642 -16.44532 -15.80691 -15.31446 -14.91430 -14.56028 -13.81336 -13.56531 -13.36246 -12.99393 -12.86059 -12.77252 -12.43473 -12.36777 -12.26736 -12.13510 -11.93686 -11.77898 -11.42961 -11.19024 -11.13028 -10.88223 -10.77720 -10.57020 -10.36864 -10.17157 -9.62889 -8.95626 -8.71320 -8.66126 -8.13260 -6.22359 -4.46093 1.62755 3.19424 3.25517 3.28053 3.80506 3.95238 4.15831 4.23728 4.61715 4.70767 4.94737 4.96937 5.16612 5.23712 5.27584 5.51430 5.56177 5.68339 5.69757 5.84499 5.89716 5.91345 6.03484 6.25486 6.25895 6.46562 6.53029 6.75708 7.01943 7.26275 7.50961 7.64883 8.41997 8.52492 8.99126 9.22122 10.69311 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.027408 B = 0.005291 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.345061 B = 5290.594057 C = 5604.730735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.020 4.020 3 C -0.213 4.213 4 C 0.535 3.465 5 O -0.533 6.533 6 N -0.709 5.709 7 C 0.245 3.755 8 H 0.084 0.916 9 C -0.552 4.552 10 H 0.077 0.923 11 C 0.064 3.936 12 N -0.840 5.840 13 Si 0.915 3.085 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.270 1.270 17 C 0.417 3.583 18 F -0.210 7.210 19 F -0.138 7.138 20 F -0.217 7.217 21 C -0.111 4.111 22 C -0.194 4.194 23 C -0.156 4.156 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.124 0.876 28 H 0.398 0.602 29 H 0.268 0.732 30 H 0.135 0.865 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.634 -3.862 -0.587 13.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.022 4.022 3 C -0.234 4.234 4 C 0.323 3.677 5 O -0.412 6.412 6 N -0.358 5.358 7 C 0.139 3.861 8 H 0.102 0.898 9 C -0.589 4.589 10 H 0.095 0.905 11 C -0.144 4.144 12 N -0.474 5.474 13 Si 0.741 3.259 14 H -0.202 1.202 15 H -0.208 1.208 16 H -0.195 1.195 17 C 0.361 3.639 18 F -0.192 7.192 19 F -0.119 7.119 20 F -0.199 7.199 21 C -0.129 4.129 22 C -0.231 4.231 23 C -0.193 4.193 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.142 0.858 28 H 0.231 0.769 29 H 0.078 0.922 30 H 0.153 0.847 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.958 -4.639 -0.334 12.831 hybrid contribution 0.309 1.342 -0.124 1.383 sum -11.649 -3.297 -0.458 12.115 Atomic orbital electron populations 1.20961 0.91544 1.02927 1.02640 1.21699 0.94827 0.93469 0.92186 1.22484 0.94112 0.98348 1.08429 1.18554 0.87552 0.84066 0.77492 1.90733 1.70875 1.31342 1.48227 1.46005 1.08723 1.09762 1.71303 1.19685 0.77196 1.02441 0.86731 0.89796 1.20892 0.92557 1.11306 1.34106 0.90504 1.25089 0.96928 0.97448 0.94967 1.70405 1.04785 1.35791 1.36381 0.86219 0.78393 0.81478 0.79781 1.20226 1.20810 1.19492 1.23140 0.76308 0.71534 0.92950 1.92984 1.87104 1.49642 1.89473 1.93399 1.26756 1.95761 1.95970 1.93070 1.86834 1.56803 1.83204 1.21451 1.00464 0.87596 1.03359 1.23120 0.98764 0.99002 1.02208 1.22763 1.02489 1.02754 0.91250 0.90639 0.91086 0.91208 0.85779 0.76851 0.92159 0.84720 0.88960 0.88899 0.88577 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 9.49 36.01 0.34 -0.85 16 2 C -0.02 -0.27 5.80 -101.17 -0.59 -0.86 16 3 C -0.21 -3.24 9.62 -37.80 -0.36 -3.61 16 4 C 0.53 10.69 7.21 -12.67 -0.09 10.60 16 5 O -0.53 -12.20 11.88 5.27 0.06 -12.13 16 6 N -0.71 -14.75 4.98 -56.12 -0.28 -15.03 16 7 C 0.25 6.16 2.21 -69.09 -0.15 6.00 16 8 H 0.08 2.35 7.58 -51.93 -0.39 1.96 16 9 C -0.55 -14.18 8.46 -34.44 -0.29 -14.48 16 10 H 0.08 1.87 7.74 -52.49 -0.41 1.46 16 11 C 0.06 1.69 5.20 -17.82 -0.09 1.59 16 12 N -0.84 -23.23 9.50 55.43 0.53 -22.70 16 13 Si 0.91 20.19 29.54 -169.99 -5.02 15.17 16 14 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 17 C 0.42 10.86 2.81 37.15 0.10 10.96 16 18 F -0.21 -5.28 16.94 2.25 0.04 -5.24 16 19 F -0.14 -3.86 12.91 2.25 0.03 -3.83 16 20 F -0.22 -5.62 15.68 2.25 0.04 -5.59 16 21 C -0.11 -1.65 4.34 -91.77 -0.40 -2.04 16 22 C -0.19 -2.24 9.79 -26.73 -0.26 -2.50 16 23 C -0.16 -2.11 10.23 -26.73 -0.27 -2.38 16 24 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 25 H 0.07 0.62 6.37 -51.93 -0.33 0.29 16 26 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 27 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 28 H 0.40 7.16 8.52 -40.82 -0.35 6.81 16 29 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.14 2.40 6.23 -51.93 -0.32 2.08 16 31 H 0.09 0.89 6.31 -51.93 -0.33 0.56 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 297.69 15.07 4.49 4.49 Total: -1.00 -29.83 297.69 -5.99 -35.82 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -3.80 Total: 6.62 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -2.07 Total: 2.44 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.25 Total: -37.73 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.06 Total: -12.13 kcal Atomic # 9 Polarization: -14.77 SS G_CDS: 0.10 Total: -14.66 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.83 -5.99 -35.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928812742.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.628 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds