Wall clock time and date at job start Mon Mar 30 2020 01:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35626 * 119.99677 * 2 1 4 4 C 1.41545 * 120.00668 * 5.65725 * 3 2 1 5 5 O 1.21784 * 119.99389 * 354.69424 * 4 3 2 6 6 N 1.34768 * 120.00432 * 174.69863 * 4 3 2 7 7 C 1.47579 * 134.49547 * 179.97438 * 6 4 3 8 8 C 1.53950 * 86.12031 * 155.35629 * 7 6 4 9 9 O 1.42902 * 113.74162 * 269.15344 * 8 7 6 10 10 C 1.50699 * 113.74150 * 137.95394 * 8 7 6 11 11 H 1.08001 * 120.00139 * 1.92531 * 10 8 7 12 12 C 1.37876 * 119.99702 * 181.92782 * 10 8 7 13 13 N 1.31523 * 119.99807 * 179.97438 * 12 10 8 14 14 Si 1.86801 * 120.00180 * 359.97438 * 12 10 8 15 15 H 1.48500 * 109.46924 * 269.99973 * 14 12 10 16 16 H 1.48497 * 109.47170 * 30.00155 * 14 12 10 17 17 H 1.48497 * 109.46933 * 150.00156 * 14 12 10 18 18 C 1.47820 * 134.45828 * 359.86249 * 6 4 3 19 19 C 1.41599 * 119.99841 * 179.97438 * 2 1 3 20 20 C 1.37952 * 126.10639 * 295.00069 * 19 2 1 21 21 C 1.40314 * 106.53279 * 179.97438 * 20 19 2 22 22 C 1.35161 * 107.20015 * 0.02562 * 21 20 19 23 23 O 1.34011 * 109.03404 * 359.77167 * 22 21 20 24 24 H 1.09005 * 109.46861 * 58.22516 * 1 2 3 25 25 H 1.09000 * 109.47091 * 178.22497 * 1 2 3 26 26 H 1.09003 * 109.47579 * 298.22712 * 1 2 3 27 27 H 1.08004 * 119.99608 * 185.65747 * 3 2 1 28 28 H 1.09003 * 113.77004 * 41.05189 * 7 6 4 29 29 H 1.09002 * 113.87132 * 269.67388 * 7 6 4 30 30 H 0.96700 * 114.00032 * 178.06927 * 9 8 7 31 31 H 0.96993 * 119.99645 * 179.97438 * 13 12 10 32 32 H 1.09002 * 113.76749 * 90.37895 * 18 6 4 33 33 H 1.09006 * 113.83220 * 318.92378 * 18 6 4 34 34 H 1.08005 * 126.73489 * 359.97438 * 20 19 2 35 35 H 1.07997 * 126.40019 * 179.97438 * 21 20 19 36 36 H 1.07996 * 125.47756 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1746 0.0000 4 6 1.4826 2.3975 0.1208 5 8 0.2648 2.4019 0.1275 6 7 2.1613 3.5568 0.2284 7 6 1.7728 4.9739 0.3657 8 6 3.1501 5.1794 1.0221 9 8 3.1404 5.0187 2.4420 10 6 3.8523 6.4366 0.5779 11 1 3.3684 7.1097 -0.1143 12 6 5.1126 6.7276 1.0553 13 7 5.7258 7.8245 0.6673 14 14 5.9494 5.5638 2.2532 15 1 5.6036 5.9523 3.6441 16 1 5.4887 4.1753 1.9980 17 1 7.4211 5.6386 2.0697 18 6 3.5942 3.9187 0.2581 19 6 2.2150 -1.2263 0.0005 20 6 2.2135 -2.1654 1.0111 21 6 3.0461 -3.2115 0.5853 22 6 3.5125 -2.8781 -0.6387 23 8 3.0079 -1.6871 -0.9893 24 1 -0.3633 0.5412 -0.8737 25 1 -0.3633 -1.0272 -0.0318 26 1 -0.3634 0.4860 0.9054 27 1 3.2612 1.1769 -0.0922 28 1 0.9345 5.1359 1.0434 29 1 1.6573 5.4938 -0.5854 30 1 4.0092 5.1179 2.8550 31 1 6.6122 8.0294 1.0035 32 1 4.0153 4.1265 -0.7255 33 1 4.2078 3.2395 0.8501 34 1 1.6768 -2.1069 1.9465 35 1 3.2726 -4.1140 1.1335 36 1 4.1815 -3.4768 -1.2390 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118754939.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:28 Heat of formation + Delta-G solvation = 5.392333 kcal Electronic energy + Delta-G solvation = -21087.588245 eV Core-core repulsion = 17734.370638 eV Total energy + Delta-G solvation = -3353.217607 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.66358 -39.96609 -38.14301 -35.09674 -34.39432 -33.08742 -32.56666 -29.92766 -28.81138 -27.49042 -25.65568 -25.21556 -23.13629 -21.82350 -20.55138 -19.59361 -18.40446 -17.48253 -17.25347 -16.68884 -16.31504 -16.10961 -15.14756 -14.99796 -14.82895 -13.77525 -13.63273 -13.56080 -13.12736 -13.05869 -12.90072 -12.77582 -12.58965 -12.41826 -12.22215 -12.07904 -11.75681 -11.23440 -10.95153 -10.62584 -10.15057 -10.14307 -9.68829 -9.49289 -9.29578 -9.01195 -8.69386 -8.44456 -7.96361 -6.43990 -4.50341 0.82681 1.59148 2.40089 2.93104 2.97746 3.00391 3.12959 3.47984 3.63495 4.01431 4.55139 4.65875 4.77078 4.88211 4.95753 5.05859 5.26947 5.43479 5.57509 5.60496 5.64976 5.83057 5.87234 5.91417 6.05081 6.08359 6.16663 6.23979 6.29376 6.33273 6.44573 6.57337 6.61202 6.88666 7.18478 8.01334 8.25674 8.49088 8.57976 8.60319 9.13521 10.68217 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.022798 B = 0.004541 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.889104 B = 6164.976101 C = 6900.929933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.016 3.984 3 C -0.172 4.172 4 C 0.559 3.441 5 O -0.555 6.555 6 N -0.628 5.628 7 C 0.128 3.872 8 C 0.195 3.805 9 O -0.553 6.553 10 C -0.537 4.537 11 H 0.092 0.908 12 C 0.081 3.919 13 N -0.876 5.876 14 Si 0.856 3.144 15 H -0.266 1.266 16 H -0.256 1.256 17 H -0.283 1.283 18 C 0.061 3.939 19 C 0.012 3.988 20 C -0.183 4.183 21 C -0.212 4.212 22 C -0.041 4.041 23 O -0.162 6.162 24 H 0.089 0.911 25 H 0.052 0.948 26 H 0.090 0.910 27 H 0.126 0.874 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.352 0.648 31 H 0.271 0.729 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.693 -18.505 -1.037 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.013 3.987 3 C -0.193 4.193 4 C 0.353 3.647 5 O -0.438 6.438 6 N -0.361 5.361 7 C 0.006 3.994 8 C 0.154 3.846 9 O -0.364 6.364 10 C -0.575 4.575 11 H 0.110 0.890 12 C -0.124 4.124 13 N -0.512 5.512 14 Si 0.685 3.315 15 H -0.193 1.193 16 H -0.181 1.181 17 H -0.209 1.209 18 C -0.061 4.061 19 C -0.038 4.038 20 C -0.202 4.202 21 C -0.231 4.231 22 C -0.109 4.109 23 O -0.058 6.058 24 H 0.107 0.893 25 H 0.071 0.929 26 H 0.108 0.892 27 H 0.144 0.856 28 H 0.095 0.905 29 H 0.113 0.887 30 H 0.204 0.796 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.170 0.830 35 H 0.168 0.832 36 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -3.817 -18.469 -1.420 18.913 hybrid contribution 1.594 -0.662 0.834 1.917 sum -2.223 -19.131 -0.586 19.269 Atomic orbital electron populations 1.20973 0.88411 1.01111 1.04970 1.19168 0.96063 0.88177 0.95296 1.22122 1.00886 0.92340 1.03910 1.16517 0.86902 0.83336 0.77978 1.90783 1.13328 1.87300 1.52437 1.50111 1.09997 1.06063 1.69972 1.23269 0.98478 0.77807 0.99804 1.20563 0.93158 0.92174 0.78728 1.86468 1.34060 1.94667 1.21180 1.21238 1.01285 1.05644 1.29293 0.89037 1.24999 0.96923 0.94897 0.95627 1.69858 1.14611 1.23810 1.42888 0.87368 0.79804 0.82122 0.82237 1.19269 1.18080 1.20921 1.24726 0.81621 0.97826 1.01978 1.19813 0.98054 0.96665 0.89227 1.22160 1.03781 0.93791 1.00489 1.21718 1.02678 1.01603 0.97139 1.24207 1.02335 0.86368 0.98031 1.84191 1.49457 1.31394 1.40711 0.89292 0.92902 0.89157 0.85645 0.90497 0.88668 0.79615 0.91879 0.88596 0.91267 0.82971 0.83160 0.77968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 8.32 36.01 0.30 -1.05 16 2 C 0.02 0.23 5.78 -104.27 -0.60 -0.37 16 3 C -0.17 -2.82 9.27 -39.26 -0.36 -3.19 16 4 C 0.56 10.81 7.77 -15.00 -0.12 10.70 16 5 O -0.56 -11.53 13.72 5.11 0.07 -11.46 16 6 N -0.63 -12.65 3.61 -181.51 -0.66 -13.31 16 7 C 0.13 2.66 8.23 -2.97 -0.02 2.63 16 8 C 0.19 4.41 1.06 -90.84 -0.10 4.31 16 9 O -0.55 -12.96 13.35 -35.23 -0.47 -13.43 16 10 C -0.54 -13.75 9.19 -34.44 -0.32 -14.06 16 11 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 12 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 13 N -0.88 -24.37 13.96 55.43 0.77 -23.59 16 14 Si 0.86 18.69 24.31 -169.99 -4.13 14.56 16 15 H -0.27 -5.68 7.05 56.52 0.40 -5.28 16 16 H -0.26 -5.21 5.16 56.52 0.29 -4.92 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 C 0.06 1.23 6.85 -2.83 -0.02 1.21 16 19 C 0.01 0.16 6.29 -38.41 -0.24 -0.08 16 20 C -0.18 -2.13 10.90 -38.91 -0.42 -2.55 16 21 C -0.21 -2.07 10.87 -39.90 -0.43 -2.50 16 22 C -0.04 -0.39 12.06 29.64 0.36 -0.04 16 23 O -0.16 -2.10 10.67 4.71 0.05 -2.05 16 24 H 0.09 1.30 7.31 -51.93 -0.38 0.92 16 25 H 0.05 0.60 7.97 -51.93 -0.41 0.18 16 26 H 0.09 1.33 7.15 -51.93 -0.37 0.96 16 27 H 0.13 1.94 7.80 -52.48 -0.41 1.54 16 28 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 29 H 0.10 1.84 8.09 -51.93 -0.42 1.42 16 30 H 0.35 7.84 3.57 45.56 0.16 8.00 16 31 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.10 1.82 8.09 -51.93 -0.42 1.40 16 33 H 0.07 1.33 6.84 -51.93 -0.35 0.98 16 34 H 0.15 1.54 8.06 -52.48 -0.42 1.12 16 35 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.20 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 306.48 15.07 4.62 4.62 Total: -1.00 -30.06 306.48 -5.79 -35.85 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -3.97 Total: 11.79 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -2.08 Total: -2.98 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.12 Total: -36.90 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.35 Total: -26.93 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.13 Total: 14.56 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.06 -5.79 -35.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118754939.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.246 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds