Wall clock time and date at job start Mon Mar 30 2020 01:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35626 * 119.99677 * 2 1 4 4 C 1.41545 * 120.00668 * 5.65725 * 3 2 1 5 5 O 1.21784 * 119.99389 * 354.69424 * 4 3 2 6 6 N 1.34768 * 120.00432 * 174.69863 * 4 3 2 7 7 C 1.47579 * 134.49547 * 179.97438 * 6 4 3 8 8 C 1.53950 * 86.12031 * 155.35629 * 7 6 4 9 9 O 1.42902 * 113.74162 * 269.15344 * 8 7 6 10 10 C 1.50699 * 113.74150 * 137.95394 * 8 7 6 11 11 H 1.08001 * 120.00139 * 1.92531 * 10 8 7 12 12 C 1.37876 * 119.99702 * 181.92782 * 10 8 7 13 13 N 1.31523 * 119.99807 * 179.97438 * 12 10 8 14 14 Si 1.86801 * 120.00180 * 359.97438 * 12 10 8 15 15 H 1.48500 * 109.46924 * 269.99973 * 14 12 10 16 16 H 1.48497 * 109.47170 * 30.00155 * 14 12 10 17 17 H 1.48497 * 109.46933 * 150.00156 * 14 12 10 18 18 C 1.47820 * 134.45828 * 359.86249 * 6 4 3 19 19 C 1.41599 * 119.99841 * 179.97438 * 2 1 3 20 20 C 1.37952 * 126.10639 * 295.00069 * 19 2 1 21 21 C 1.40314 * 106.53279 * 179.97438 * 20 19 2 22 22 C 1.35161 * 107.20015 * 0.02562 * 21 20 19 23 23 O 1.34011 * 109.03404 * 359.77167 * 22 21 20 24 24 H 1.09005 * 109.46861 * 58.22516 * 1 2 3 25 25 H 1.09000 * 109.47091 * 178.22497 * 1 2 3 26 26 H 1.09003 * 109.47579 * 298.22712 * 1 2 3 27 27 H 1.08004 * 119.99608 * 185.65747 * 3 2 1 28 28 H 1.09003 * 113.77004 * 41.05189 * 7 6 4 29 29 H 1.09002 * 113.87132 * 269.67388 * 7 6 4 30 30 H 0.96700 * 114.00032 * 178.06927 * 9 8 7 31 31 H 0.96993 * 119.99645 * 179.97438 * 13 12 10 32 32 H 1.09002 * 113.76749 * 90.37895 * 18 6 4 33 33 H 1.09006 * 113.83220 * 318.92378 * 18 6 4 34 34 H 1.08005 * 126.73489 * 359.97438 * 20 19 2 35 35 H 1.07997 * 126.40019 * 179.97438 * 21 20 19 36 36 H 1.07996 * 125.47756 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1746 0.0000 4 6 1.4826 2.3975 0.1208 5 8 0.2648 2.4019 0.1275 6 7 2.1613 3.5568 0.2284 7 6 1.7728 4.9739 0.3657 8 6 3.1501 5.1794 1.0221 9 8 3.1404 5.0187 2.4420 10 6 3.8523 6.4366 0.5779 11 1 3.3684 7.1097 -0.1143 12 6 5.1126 6.7276 1.0553 13 7 5.7258 7.8245 0.6673 14 14 5.9494 5.5638 2.2532 15 1 5.6036 5.9523 3.6441 16 1 5.4887 4.1753 1.9980 17 1 7.4211 5.6386 2.0697 18 6 3.5942 3.9187 0.2581 19 6 2.2150 -1.2263 0.0005 20 6 2.2135 -2.1654 1.0111 21 6 3.0461 -3.2115 0.5853 22 6 3.5125 -2.8781 -0.6387 23 8 3.0079 -1.6871 -0.9893 24 1 -0.3633 0.5412 -0.8737 25 1 -0.3633 -1.0272 -0.0318 26 1 -0.3634 0.4860 0.9054 27 1 3.2612 1.1769 -0.0922 28 1 0.9345 5.1359 1.0434 29 1 1.6573 5.4938 -0.5854 30 1 4.0092 5.1179 2.8550 31 1 6.6122 8.0294 1.0035 32 1 4.0153 4.1265 -0.7255 33 1 4.2078 3.2395 0.8501 34 1 1.6768 -2.1069 1.9465 35 1 3.2726 -4.1140 1.1335 36 1 4.1815 -3.4768 -1.2390 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118754939.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:27 Heat of formation + Delta-G solvation = -15.950556 kcal Electronic energy + Delta-G solvation = -21088.513742 eV Core-core repulsion = 17734.370638 eV Total energy + Delta-G solvation = -3354.143104 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.51365 -41.53580 -39.71538 -36.48029 -35.97027 -34.55798 -33.91959 -31.40870 -29.83765 -28.93572 -27.23741 -26.93988 -24.25227 -22.62650 -22.04875 -20.86304 -19.85289 -19.31763 -18.48013 -18.11958 -17.83388 -17.12026 -16.57677 -16.35832 -16.09332 -15.45346 -15.26401 -15.07537 -14.51604 -14.42689 -14.03818 -13.89662 -13.85485 -13.71692 -13.50890 -13.37170 -13.02256 -12.82615 -12.62451 -12.45442 -11.95159 -11.38253 -11.08789 -10.97311 -10.82214 -10.64008 -10.43846 -9.64514 -9.25962 -8.43339 -6.55948 -0.32660 0.67705 1.24970 1.28094 1.39564 1.62277 1.86928 2.07353 2.17405 2.30052 2.77065 3.23035 3.57145 3.78990 3.82188 3.99621 4.04385 4.18247 4.34840 4.37387 4.41392 4.59087 4.65390 4.69238 4.71905 4.82864 4.91205 4.93017 4.97729 5.05105 5.17876 5.28428 5.38735 5.54739 6.03730 6.06026 6.52016 6.65729 6.74887 7.06560 7.13019 8.72123 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.022798 B = 0.004541 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.889104 B = 6164.976101 C = 6900.929933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.048 3.952 3 C -0.203 4.203 4 C 0.559 3.441 5 O -0.577 6.577 6 N -0.634 5.634 7 C 0.127 3.873 8 C 0.185 3.815 9 O -0.560 6.560 10 C -0.545 4.545 11 H 0.057 0.943 12 C 0.030 3.970 13 N -0.924 5.924 14 Si 0.915 3.085 15 H -0.256 1.256 16 H -0.230 1.230 17 H -0.281 1.281 18 C 0.075 3.925 19 C -0.032 4.032 20 C -0.174 4.174 21 C -0.221 4.221 22 C -0.029 4.029 23 O -0.181 6.181 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.133 0.867 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.357 0.643 31 H 0.274 0.726 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.164 0.836 35 H 0.179 0.821 36 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.925 -22.164 -0.358 22.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.045 3.955 3 C -0.224 4.224 4 C 0.354 3.646 5 O -0.462 6.462 6 N -0.367 5.367 7 C 0.005 3.995 8 C 0.144 3.856 9 O -0.372 6.372 10 C -0.583 4.583 11 H 0.075 0.925 12 C -0.171 4.171 13 N -0.561 5.561 14 Si 0.740 3.260 15 H -0.182 1.182 16 H -0.154 1.154 17 H -0.207 1.207 18 C -0.048 4.048 19 C -0.081 4.081 20 C -0.193 4.193 21 C -0.239 4.239 22 C -0.097 4.097 23 O -0.077 6.077 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.151 0.849 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.209 0.791 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.102 0.898 34 H 0.181 0.819 35 H 0.197 0.803 36 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -3.068 -22.144 -0.742 22.368 hybrid contribution 1.281 0.375 0.577 1.454 sum -1.786 -21.769 -0.165 21.843 Atomic orbital electron populations 1.20958 0.88149 1.02408 1.03826 1.19332 0.96383 0.88435 0.91334 1.21960 1.01177 0.91529 1.07720 1.16940 0.86775 0.83759 0.77078 1.90769 1.14266 1.87573 1.53592 1.50072 1.09904 1.05910 1.70794 1.23228 0.97460 0.78901 0.99960 1.20594 0.94235 0.92095 0.78646 1.86461 1.34609 1.94624 1.21469 1.21356 1.01603 1.06548 1.28750 0.92478 1.25804 0.97484 0.96457 0.97381 1.69997 1.15281 1.26054 1.44782 0.86385 0.78514 0.81126 0.80001 1.18173 1.15405 1.20723 1.24531 0.81911 0.96295 1.02052 1.19693 1.00428 0.97174 0.90778 1.22495 1.03142 0.93455 1.00241 1.22109 1.02242 1.02147 0.97439 1.25130 1.01117 0.85103 0.98344 1.84177 1.49717 1.32821 1.40954 0.90327 0.90344 0.90222 0.84878 0.90902 0.87956 0.79121 0.91682 0.87806 0.89802 0.81857 0.80328 0.74052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.56 8.32 71.24 0.59 -1.97 16 2 C 0.05 1.34 5.78 -19.64 -0.11 1.22 16 3 C -0.20 -6.48 9.27 22.48 0.21 -6.28 16 4 C 0.56 21.39 7.77 85.06 0.66 22.05 16 5 O -0.58 -24.01 13.72 -4.62 -0.06 -24.07 16 6 N -0.63 -25.19 3.61 -850.16 -3.07 -28.26 16 7 C 0.13 5.30 8.23 86.49 0.71 6.02 16 8 C 0.19 8.32 1.06 -10.87 -0.01 8.31 16 9 O -0.56 -25.59 13.35 -148.98 -1.99 -27.58 16 10 C -0.54 -28.49 9.19 25.60 0.24 -28.26 16 11 H 0.06 3.29 8.06 -2.91 -0.02 3.26 16 12 C 0.03 1.57 5.47 84.65 0.46 2.04 16 13 N -0.92 -52.60 13.96 21.45 0.30 -52.30 16 14 Si 0.92 37.74 24.31 68.60 1.67 39.41 16 15 H -0.26 -10.12 7.05 99.48 0.70 -9.42 16 16 H -0.23 -8.48 5.16 99.48 0.51 -7.97 16 17 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 18 C 0.07 2.91 6.85 86.44 0.59 3.50 16 19 C -0.03 -0.78 6.29 23.03 0.14 -0.64 16 20 C -0.17 -3.52 10.90 22.71 0.25 -3.27 16 21 C -0.22 -3.41 10.87 22.07 0.24 -3.17 16 22 C -0.03 -0.44 12.06 67.11 0.81 0.36 16 23 O -0.18 -4.22 10.67 -6.05 -0.06 -4.28 16 24 H 0.08 2.26 7.31 -2.38 -0.02 2.25 16 25 H 0.08 1.62 7.97 -2.39 -0.02 1.60 16 26 H 0.08 2.30 7.15 -2.39 -0.02 2.28 16 27 H 0.13 3.96 7.80 -2.91 -0.02 3.94 16 28 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 29 H 0.10 4.05 8.09 -2.39 -0.02 4.03 16 30 H 0.36 15.15 3.57 -74.06 -0.26 14.88 16 31 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.10 3.85 8.09 -2.39 -0.02 3.83 16 33 H 0.08 3.01 6.84 -2.38 -0.02 2.99 16 34 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 35 H 0.18 1.67 8.06 -2.91 -0.02 1.64 16 36 H 0.24 1.44 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -65.88 306.48 2.20 -63.68 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: 0.64 Total: 33.49 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 4.78 Total: -0.09 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -2.77 Total: -80.56 kcal Atomic # 8 Polarization: -53.81 SS G_CDS: -2.12 Total: -55.93 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 1.67 Total: 39.41 kcal Total: -65.88 2.20 -63.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118754939.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.728 kcal (2) G-P(sol) polarization free energy of solvation -65.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds