Wall clock time and date at job start Mon Mar 30 2020 01:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.08998 * 109.47211 * 54.45014 * 3 2 1 5 5 C 1.50698 * 109.47023 * 174.45144 * 3 2 1 6 6 H 1.07998 * 119.99789 * 88.03941 * 5 3 2 7 7 C 1.37879 * 120.00141 * 268.03376 * 5 3 2 8 8 N 1.31508 * 119.99848 * 175.05400 * 7 5 3 9 9 Si 1.86803 * 119.99763 * 355.05690 * 7 5 3 10 10 H 1.48497 * 109.47218 * 275.07902 * 9 7 5 11 11 H 1.48499 * 109.47068 * 35.08438 * 9 7 5 12 12 H 1.48500 * 109.46671 * 155.08185 * 9 7 5 13 13 O 1.45203 * 109.46879 * 294.45194 * 3 2 1 14 14 C 1.34709 * 117.00068 * 90.00057 * 13 3 2 15 15 O 1.21472 * 119.99737 * 359.97438 * 14 13 3 16 16 C 1.47731 * 120.00163 * 179.97438 * 14 13 3 17 17 C 1.39770 * 120.48136 * 359.72311 * 16 14 13 18 18 N 1.31747 * 120.93361 * 179.69802 * 17 16 14 19 19 C 1.31722 * 122.07831 * 0.59453 * 18 17 16 20 20 C 1.39918 * 120.85320 * 359.69465 * 19 18 17 21 21 C 1.47175 * 120.51280 * 179.97438 * 20 19 18 22 22 C 1.50694 * 120.00297 * 0.02987 * 21 20 19 23 23 O 1.21257 * 119.99758 * 180.02562 * 21 20 19 24 24 C 1.39720 * 120.48602 * 180.02562 * 16 14 13 25 25 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 26 26 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 27 27 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 29 29 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 30 30 H 0.97007 * 119.99432 * 180.02562 * 8 7 5 31 31 H 1.07999 * 119.52906 * 359.97438 * 17 16 14 32 32 H 1.07998 * 119.57217 * 179.67765 * 19 18 17 33 33 H 1.09001 * 109.47638 * 59.99284 * 22 21 20 34 34 H 1.09000 * 109.47477 * 180.02562 * 22 21 20 35 35 H 1.09002 * 109.47254 * 299.99512 * 22 21 20 36 36 H 1.07994 * 120.93167 * 359.97438 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 0.8361 5 6 3.5407 1.4447 0.1374 6 1 4.1635 1.3834 -0.7428 7 6 4.1185 1.5251 1.3867 8 7 5.4238 1.4292 1.5148 9 14 3.0471 1.7702 2.8972 10 1 2.7777 3.2187 3.0832 11 1 1.7629 1.0471 2.7158 12 1 3.7493 1.2397 4.0933 13 8 1.6670 2.0877 -1.2462 14 6 0.4798 2.7236 -1.2743 15 8 -0.2248 2.7384 -0.2849 16 6 0.0348 3.4030 -2.5083 17 6 0.8400 3.3973 -3.6507 18 7 0.4493 3.9953 -4.7577 19 6 -0.7010 4.6316 -4.8405 20 6 -1.5676 4.6930 -3.7437 21 6 -2.8509 5.4065 -3.8444 22 6 -3.2407 6.0776 -5.1361 23 8 -3.5947 5.4543 -2.8879 24 6 -1.1944 4.0661 -2.5485 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8303 1.4854 2.3938 31 1 1.7941 2.8917 -3.6269 32 1 -0.9787 5.1123 -5.7669 33 1 -3.2897 5.3340 -5.9316 34 1 -4.2157 6.5508 -5.0200 35 1 -2.4983 6.8339 -5.3911 36 1 -1.8389 4.0936 -1.6824 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122980788.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:44 Heat of formation + Delta-G solvation = -96.365844 kcal Electronic energy + Delta-G solvation = -21013.284809 eV Core-core repulsion = 17655.654636 eV Total energy + Delta-G solvation = -3357.630173 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.91171 -39.69163 -38.83678 -36.09646 -33.57643 -32.85371 -32.55168 -31.97066 -29.92089 -27.93057 -25.27306 -24.33220 -22.96468 -21.87738 -20.40359 -19.57219 -18.07584 -17.36277 -17.01628 -16.48339 -16.11234 -15.69543 -15.59511 -15.34971 -14.77418 -14.37300 -13.89126 -13.47213 -13.39145 -12.88496 -12.76588 -12.73661 -12.56877 -12.49335 -12.15257 -11.80046 -11.48777 -11.05689 -10.88934 -10.60983 -10.26445 -10.19509 -10.07248 -9.90983 -9.67579 -9.49283 -9.45059 -9.15742 -8.76136 -6.33380 -4.37823 0.10527 0.63216 2.00097 2.85648 3.10684 3.22064 3.25732 3.31042 3.66829 3.68614 4.08473 4.21294 4.46253 4.51500 4.63419 4.79721 4.95608 4.98162 4.99114 5.17629 5.37016 5.53244 5.73556 5.84078 5.85258 5.94034 6.01571 6.20647 6.34487 6.56790 6.71774 6.73719 7.08444 7.12633 7.23330 7.41970 7.51914 8.11586 8.46333 8.76210 9.25075 10.77665 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.027327 B = 0.004340 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.392870 B = 6450.669521 C = 6741.001446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.191 3.809 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.087 0.913 7 C 0.085 3.915 8 N -0.879 5.879 9 Si 0.866 3.134 10 H -0.270 1.270 11 H -0.258 1.258 12 H -0.281 1.281 13 O -0.339 6.339 14 C 0.499 3.501 15 O -0.509 6.509 16 C -0.175 4.175 17 C 0.188 3.812 18 N -0.496 5.496 19 C 0.169 3.831 20 C -0.243 4.243 21 C 0.401 3.599 22 C -0.200 4.200 23 O -0.452 6.452 24 C 0.038 3.962 25 H 0.054 0.946 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.271 0.729 31 H 0.183 0.817 32 H 0.170 0.830 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.515 6.091 -13.182 19.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.170 4.170 3 C 0.138 3.862 4 H 0.066 0.934 5 C -0.559 4.559 6 H 0.105 0.895 7 C -0.120 4.120 8 N -0.515 5.515 9 Si 0.691 3.309 10 H -0.196 1.196 11 H -0.182 1.182 12 H -0.206 1.206 13 O -0.255 6.255 14 C 0.343 3.657 15 O -0.400 6.400 16 C -0.178 4.178 17 C 0.032 3.968 18 N -0.204 5.204 19 C 0.011 3.989 20 C -0.246 4.246 21 C 0.278 3.722 22 C -0.256 4.256 23 O -0.326 6.326 24 C 0.012 3.988 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.200 0.800 32 H 0.187 0.813 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.347 6.047 -12.940 19.549 hybrid contribution -0.896 0.126 1.693 1.919 sum -14.243 6.173 -11.248 19.170 Atomic orbital electron populations 1.21938 0.97503 0.99940 1.01498 1.22130 0.93572 0.98780 1.02564 1.21099 0.96255 0.88802 0.80045 0.93373 1.20768 0.87624 1.52240 0.95268 0.89486 1.24867 0.94956 0.93613 0.98602 1.69846 1.09470 1.47608 1.24618 0.87015 0.81348 0.79808 0.82683 1.19551 1.18248 1.20628 1.86680 1.32942 1.62131 1.43722 1.20704 0.81362 0.76945 0.86731 1.90799 1.55096 1.58646 1.35493 1.20486 0.97293 1.04445 0.95626 1.23688 0.98349 0.88953 0.85809 1.67874 1.16154 1.09563 1.26778 1.23425 0.87867 0.90541 0.97099 1.21502 0.99901 1.06794 0.96367 1.22335 0.83789 0.76452 0.89596 1.22260 1.04453 1.02427 0.96500 1.90585 1.50926 1.51404 1.39729 1.22047 0.92993 0.86404 0.97335 0.92704 0.93993 0.93933 0.91748 0.90871 0.91883 0.79962 0.81326 0.88509 0.89352 0.88494 0.82483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.57 37.16 0.32 -2.58 16 2 C -0.13 -2.84 5.58 -26.73 -0.15 -2.98 16 3 C 0.19 4.59 1.84 -27.88 -0.05 4.54 16 4 H 0.05 1.23 4.49 -51.93 -0.23 0.99 16 5 C -0.52 -14.31 9.24 -34.44 -0.32 -14.63 16 6 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 7 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 8 N -0.88 -25.63 13.96 55.43 0.77 -24.85 16 9 Si 0.87 20.99 26.72 -169.99 -4.54 16.44 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.26 -6.07 6.87 56.52 0.39 -5.68 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 O -0.34 -7.36 9.08 -40.52 -0.37 -7.73 16 14 C 0.50 9.79 6.38 34.61 0.22 10.01 16 15 O -0.51 -11.03 13.59 -19.24 -0.26 -11.29 16 16 C -0.18 -2.72 5.88 -104.89 -0.62 -3.33 16 17 C 0.19 2.57 10.78 -17.02 -0.18 2.39 16 18 N -0.50 -5.98 10.33 -12.48 -0.13 -6.11 16 19 C 0.17 1.58 10.64 -16.97 -0.18 1.40 16 20 C -0.24 -2.64 5.88 -104.97 -0.62 -3.26 16 21 C 0.40 3.96 7.23 -30.68 -0.22 3.74 16 22 C -0.20 -1.00 8.95 36.00 0.32 -0.68 16 23 O -0.45 -6.24 17.14 5.58 0.10 -6.14 16 24 C 0.04 0.52 9.25 -38.36 -0.35 0.17 16 25 H 0.05 1.10 7.82 -51.93 -0.41 0.69 16 26 H 0.04 0.79 6.05 -51.93 -0.31 0.48 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.07 1.58 7.92 -51.93 -0.41 1.17 16 30 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.18 2.41 7.61 -52.49 -0.40 2.01 16 32 H 0.17 0.84 7.06 -52.49 -0.37 0.47 16 33 H 0.10 0.29 8.09 -51.93 -0.42 -0.13 16 34 H 0.09 0.45 8.12 -51.93 -0.42 0.03 16 35 H 0.10 0.30 8.09 -51.93 -0.42 -0.12 16 36 H 0.16 2.33 7.40 -52.49 -0.39 1.94 16 LS Contribution 312.90 15.07 4.72 4.72 Total: -1.00 -32.30 312.90 -5.85 -38.15 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -4.20 Total: -0.22 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -1.93 Total: -2.96 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.64 Total: -30.97 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.53 Total: -25.16 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.54 Total: 16.44 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.30 -5.85 -38.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122980788.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.220 kcal (2) G-P(sol) polarization free energy of solvation -32.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds