Wall clock time and date at job start Mon Mar 30 2020 01:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.08998 * 109.47211 * 54.45014 * 3 2 1 5 5 C 1.50698 * 109.47023 * 174.45144 * 3 2 1 6 6 H 1.07998 * 119.99789 * 88.03941 * 5 3 2 7 7 C 1.37879 * 120.00141 * 268.03376 * 5 3 2 8 8 N 1.31508 * 119.99848 * 175.05400 * 7 5 3 9 9 Si 1.86803 * 119.99763 * 355.05690 * 7 5 3 10 10 H 1.48497 * 109.47218 * 275.07902 * 9 7 5 11 11 H 1.48499 * 109.47068 * 35.08438 * 9 7 5 12 12 H 1.48500 * 109.46671 * 155.08185 * 9 7 5 13 13 O 1.45203 * 109.46879 * 294.45194 * 3 2 1 14 14 C 1.34709 * 117.00068 * 90.00057 * 13 3 2 15 15 O 1.21472 * 119.99737 * 359.97438 * 14 13 3 16 16 C 1.47731 * 120.00163 * 179.97438 * 14 13 3 17 17 C 1.39770 * 120.48136 * 359.72311 * 16 14 13 18 18 N 1.31747 * 120.93361 * 179.69802 * 17 16 14 19 19 C 1.31722 * 122.07831 * 0.59453 * 18 17 16 20 20 C 1.39918 * 120.85320 * 359.69465 * 19 18 17 21 21 C 1.47175 * 120.51280 * 179.97438 * 20 19 18 22 22 C 1.50694 * 120.00297 * 0.02987 * 21 20 19 23 23 O 1.21257 * 119.99758 * 180.02562 * 21 20 19 24 24 C 1.39720 * 120.48602 * 180.02562 * 16 14 13 25 25 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 26 26 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 27 27 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 29 29 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 30 30 H 0.97007 * 119.99432 * 180.02562 * 8 7 5 31 31 H 1.07999 * 119.52906 * 359.97438 * 17 16 14 32 32 H 1.07998 * 119.57217 * 179.67765 * 19 18 17 33 33 H 1.09001 * 109.47638 * 59.99284 * 22 21 20 34 34 H 1.09000 * 109.47477 * 180.02562 * 22 21 20 35 35 H 1.09002 * 109.47254 * 299.99512 * 22 21 20 36 36 H 1.07994 * 120.93167 * 359.97438 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 0.8361 5 6 3.5407 1.4447 0.1374 6 1 4.1635 1.3834 -0.7428 7 6 4.1185 1.5251 1.3867 8 7 5.4238 1.4292 1.5148 9 14 3.0471 1.7702 2.8972 10 1 2.7777 3.2187 3.0832 11 1 1.7629 1.0471 2.7158 12 1 3.7493 1.2397 4.0933 13 8 1.6670 2.0877 -1.2462 14 6 0.4798 2.7236 -1.2743 15 8 -0.2248 2.7384 -0.2849 16 6 0.0348 3.4030 -2.5083 17 6 0.8400 3.3973 -3.6507 18 7 0.4493 3.9953 -4.7577 19 6 -0.7010 4.6316 -4.8405 20 6 -1.5676 4.6930 -3.7437 21 6 -2.8509 5.4065 -3.8444 22 6 -3.2407 6.0776 -5.1361 23 8 -3.5947 5.4543 -2.8879 24 6 -1.1944 4.0661 -2.5485 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8303 1.4854 2.3938 31 1 1.7941 2.8917 -3.6269 32 1 -0.9787 5.1123 -5.7669 33 1 -3.2897 5.3340 -5.9316 34 1 -4.2157 6.5508 -5.0200 35 1 -2.4983 6.8339 -5.3911 36 1 -1.8389 4.0936 -1.6824 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122980788.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:44 Heat of formation + Delta-G solvation = -117.207827 kcal Electronic energy + Delta-G solvation = -21014.188585 eV Core-core repulsion = 17655.654636 eV Total energy + Delta-G solvation = -3358.533949 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.05659 -41.07782 -39.82383 -37.80167 -35.43877 -34.10318 -33.83633 -33.40792 -30.59787 -29.79536 -26.45276 -25.42487 -24.69245 -23.13538 -21.88519 -20.97911 -19.55517 -18.75209 -18.51232 -17.66625 -17.50514 -17.18589 -16.78757 -16.25172 -16.15815 -15.57870 -15.17437 -14.88080 -14.82089 -14.45927 -14.18388 -13.99708 -13.66955 -13.61410 -13.20968 -13.12716 -12.99562 -12.97462 -12.65561 -12.08220 -11.92619 -11.80141 -11.42904 -11.26936 -11.19258 -11.07791 -10.84255 -10.63401 -10.49292 -8.48744 -6.57760 -0.85593 -0.45599 1.10936 1.22743 1.27724 1.37285 1.54693 1.69317 2.17670 2.59945 2.83508 2.90313 3.17978 3.50708 3.56625 3.59848 3.89652 3.99279 4.13233 4.21138 4.28065 4.39085 4.54104 4.57866 4.74313 4.74612 4.83315 4.96775 5.02947 5.05939 5.22190 5.28463 5.31354 5.41510 5.55117 6.10315 6.39127 6.50671 6.54980 6.76135 7.09204 8.66310 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.027327 B = 0.004340 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.392870 B = 6450.669521 C = 6741.001446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.193 3.807 4 H 0.035 0.965 5 C -0.531 4.531 6 H 0.053 0.947 7 C 0.040 3.960 8 N -0.920 5.920 9 Si 0.920 3.080 10 H -0.272 1.272 11 H -0.248 1.248 12 H -0.267 1.267 13 O -0.347 6.347 14 C 0.499 3.501 15 O -0.536 6.536 16 C -0.197 4.197 17 C 0.193 3.807 18 N -0.501 5.501 19 C 0.197 3.803 20 C -0.240 4.240 21 C 0.405 3.595 22 C -0.192 4.192 23 O -0.501 6.501 24 C 0.029 3.971 25 H 0.042 0.958 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.276 0.724 31 H 0.180 0.820 32 H 0.227 0.773 33 H 0.128 0.872 34 H 0.088 0.912 35 H 0.127 0.873 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.529 7.020 -15.447 23.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C 0.139 3.861 4 H 0.053 0.947 5 C -0.569 4.569 6 H 0.071 0.929 7 C -0.162 4.162 8 N -0.558 5.558 9 Si 0.743 3.257 10 H -0.197 1.197 11 H -0.172 1.172 12 H -0.191 1.191 13 O -0.263 6.263 14 C 0.344 3.656 15 O -0.428 6.428 16 C -0.201 4.201 17 C 0.037 3.963 18 N -0.209 5.209 19 C 0.039 3.961 20 C -0.243 4.243 21 C 0.285 3.715 22 C -0.248 4.248 23 O -0.379 6.379 24 C 0.003 3.997 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.197 0.803 32 H 0.243 0.757 33 H 0.146 0.854 34 H 0.107 0.893 35 H 0.145 0.855 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.364 6.975 -15.235 22.733 hybrid contribution -0.307 -0.079 2.206 2.228 sum -15.671 6.896 -13.030 21.515 Atomic orbital electron populations 1.21830 0.95466 1.01776 1.00807 1.22049 0.95314 0.96748 1.02756 1.20891 0.94155 0.90429 0.80581 0.94687 1.20911 0.89370 1.52241 0.94337 0.92857 1.25555 0.95994 0.93302 1.01333 1.69945 1.11079 1.49136 1.25660 0.86144 0.80232 0.79651 0.79638 1.19734 1.17161 1.19135 1.86623 1.34569 1.62778 1.42304 1.21330 0.80116 0.76160 0.87960 1.90772 1.55499 1.59665 1.36860 1.20183 0.98763 1.06616 0.94494 1.23634 0.97993 0.88906 0.85749 1.68009 1.17413 1.09979 1.25502 1.24292 0.85743 0.87865 0.98162 1.21821 1.00993 1.06028 0.95459 1.23067 0.82324 0.75269 0.90841 1.22346 1.05253 1.03387 0.93849 1.90588 1.52072 1.53306 1.41915 1.22033 0.92223 0.86992 0.98426 0.93871 0.94220 0.90749 0.91081 0.91176 0.91432 0.80275 0.75656 0.85377 0.89322 0.85518 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.30 8.57 71.98 0.62 -4.68 16 2 C -0.13 -5.59 5.58 30.59 0.17 -5.42 16 3 C 0.19 9.49 1.84 29.85 0.05 9.55 16 4 H 0.04 1.82 4.49 -2.39 -0.01 1.81 16 5 C -0.53 -30.19 9.24 25.60 0.24 -29.96 16 6 H 0.05 3.31 8.06 -2.91 -0.02 3.28 16 7 C 0.04 2.25 5.47 84.66 0.46 2.71 16 8 N -0.92 -55.10 13.96 21.45 0.30 -54.80 16 9 Si 0.92 43.80 26.72 68.60 1.83 45.63 16 10 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.25 -11.29 6.87 99.48 0.68 -10.61 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 13 O -0.35 -15.53 9.08 -56.19 -0.51 -16.04 16 14 C 0.50 20.10 6.38 70.33 0.45 20.55 16 15 O -0.54 -23.87 13.59 19.93 0.27 -23.60 16 16 C -0.20 -6.15 5.88 -20.04 -0.12 -6.27 16 17 C 0.19 5.14 10.78 85.08 0.92 6.06 16 18 N -0.50 -10.63 10.33 -193.40 -2.00 -12.63 16 19 C 0.20 2.82 10.64 85.12 0.91 3.72 16 20 C -0.24 -4.62 5.88 -20.09 -0.12 -4.74 16 21 C 0.41 6.89 7.23 28.03 0.20 7.09 16 22 C -0.19 -0.96 8.95 71.23 0.64 -0.33 16 23 O -0.50 -13.48 17.14 -2.96 -0.05 -13.53 16 24 C 0.03 0.80 9.25 23.06 0.21 1.01 16 25 H 0.04 1.70 7.82 -2.39 -0.02 1.68 16 26 H 0.04 1.48 6.05 -2.39 -0.01 1.46 16 27 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 28 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 29 H 0.07 3.01 7.92 -2.38 -0.02 3.00 16 30 H 0.28 15.30 8.31 -92.70 -0.77 14.53 16 31 H 0.18 4.78 7.61 -2.91 -0.02 4.75 16 32 H 0.23 0.61 7.06 -2.91 -0.02 0.59 16 33 H 0.13 -0.06 8.09 -2.39 -0.02 -0.08 16 34 H 0.09 0.54 8.12 -2.39 -0.02 0.52 16 35 H 0.13 -0.02 8.09 -2.39 -0.02 -0.04 16 36 H 0.14 4.33 7.40 -2.91 -0.02 4.30 16 Total: -1.00 -74.38 312.90 5.56 -68.82 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: 1.08 Total: 6.84 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 4.63 Total: -0.70 kcal Atomic # 7 Polarization: -65.73 SS G_CDS: -1.70 Total: -67.42 kcal Atomic # 8 Polarization: -52.88 SS G_CDS: -0.29 Total: -53.17 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.83 Total: 45.63 kcal Total: -74.38 5.56 -68.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122980788.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.384 kcal (2) G-P(sol) polarization free energy of solvation -74.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds