Wall clock time and date at job start Mon Mar 30 2020 02:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99645 * 2 1 4 4 O 1.42905 * 109.46872 * 135.00682 * 3 2 1 5 5 C 1.42899 * 114.00219 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47110 * 179.97438 * 5 4 3 7 7 O 1.21286 * 120.00228 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99575 * 179.97438 * 6 5 4 9 9 C 1.39986 * 119.99597 * 175.49172 * 8 6 5 10 10 C 1.38914 * 120.00328 * 215.12337 * 9 8 6 11 11 C 1.38004 * 120.00321 * 180.02562 * 10 9 8 12 12 C 1.38906 * 119.99637 * 0.02562 * 11 10 9 13 13 O 1.35780 * 119.99544 * 179.97438 * 12 11 10 14 14 C 1.34814 * 117.00386 * 5.34527 * 13 12 11 15 15 H 1.08001 * 119.99395 * 354.96428 * 14 13 12 16 16 C 1.38627 * 120.00361 * 174.96175 * 14 13 12 17 17 N 1.31571 * 119.99963 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00214 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47260 * 89.99770 * 18 16 14 20 20 H 1.48496 * 109.47559 * 210.00076 * 18 16 14 21 21 H 1.48502 * 109.47182 * 330.00306 * 18 16 14 22 22 C 1.38906 * 120.00519 * 0.25484 * 12 11 10 23 23 C 1.37994 * 120.00186 * 359.45181 * 22 12 11 24 24 H 1.07997 * 119.99831 * 179.97438 * 1 2 3 25 25 H 1.07995 * 120.00220 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.00220 * 180.02562 * 2 1 3 27 27 H 1.08992 * 109.47459 * 15.00383 * 3 2 1 28 28 H 1.09000 * 109.47176 * 255.00285 * 3 2 1 29 29 H 1.09008 * 109.46776 * 59.99882 * 5 4 3 30 30 H 1.08996 * 109.47195 * 299.99900 * 5 4 3 31 31 H 0.97003 * 119.99962 * 355.49585 * 8 6 5 32 32 H 1.08005 * 120.00053 * 0.02562 * 10 9 8 33 33 H 1.08002 * 120.00231 * 180.02562 * 11 10 9 34 34 H 0.97001 * 120.00332 * 179.97438 * 17 16 14 35 35 H 1.08003 * 119.99924 * 179.70124 * 22 12 11 36 36 H 1.08003 * 120.00725 * 180.27620 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1268 1.2413 0.9526 5 6 3.9085 2.4349 1.0320 6 6 4.9941 2.2567 2.0620 7 8 5.0893 1.2105 2.6680 8 7 5.8598 3.2598 2.3089 9 6 6.8081 3.1303 3.3305 10 6 7.1761 4.2395 4.0815 11 6 8.1114 4.1118 5.0882 12 6 8.6852 2.8743 5.3501 13 8 9.6058 2.7488 6.3403 14 6 9.8368 3.8364 7.1028 15 1 9.3606 4.7754 6.8622 16 6 10.6853 3.7494 8.1955 17 7 11.2650 2.6053 8.4888 18 14 11.0047 5.2561 9.2524 19 1 10.0039 5.3134 10.3481 20 1 12.3693 5.1740 9.8322 21 1 10.8946 6.4790 8.4171 22 6 8.3217 1.7663 4.5954 23 6 7.3820 1.8925 3.5927 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3855 2.1161 0.2660 28 1 2.4754 1.4869 -0.9927 29 1 3.2689 3.2696 1.3193 30 1 4.3587 2.6396 0.0608 31 1 5.8256 4.0715 1.7789 32 1 6.7302 5.2018 3.8775 33 1 8.3972 4.9741 5.6723 34 1 11.8591 2.5444 9.2532 35 1 8.7715 0.8051 4.7960 36 1 7.0960 1.0301 3.0088 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001124187347.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:09 Heat of formation + Delta-G solvation = -50.581492 kcal Electronic energy + Delta-G solvation = -19909.274524 eV Core-core repulsion = 16553.629710 eV Total energy + Delta-G solvation = -3355.644814 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.19024 -38.82103 -37.98483 -36.38916 -34.14536 -33.98909 -32.19450 -30.21417 -29.40041 -27.31543 -25.79061 -25.19059 -22.31309 -21.62970 -20.52037 -20.06178 -18.08176 -17.56517 -17.31997 -16.85923 -16.63715 -15.88669 -15.44816 -14.81453 -14.56366 -14.41542 -13.91626 -13.67704 -13.57135 -13.23481 -12.82448 -12.68199 -12.42797 -12.36538 -11.83315 -11.56996 -11.51163 -11.31460 -11.02307 -10.73341 -10.45573 -10.28888 -9.75149 -9.66508 -9.56117 -9.22704 -8.70669 -8.20479 -6.94400 -6.44003 -4.02224 1.77901 2.07634 2.21025 2.74800 2.90544 3.13182 3.14838 3.18636 3.87049 3.97357 4.51849 4.59416 4.72255 4.75848 4.84515 4.89710 5.01275 5.10193 5.14076 5.33824 5.50865 5.54951 5.78832 6.13526 6.21194 6.21865 6.24702 6.29288 6.72227 6.81843 6.85024 7.00314 7.15914 7.22357 7.41326 7.68405 7.78438 8.00313 8.34353 9.01147 9.71609 10.73916 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.049083 B = 0.002677 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.322184 B =10457.017321 C =10655.474360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 C 0.086 3.914 4 O -0.358 6.358 5 C 0.047 3.953 6 C 0.504 3.496 7 O -0.504 6.504 8 N -0.659 5.659 9 C 0.033 3.967 10 C -0.088 4.088 11 C -0.221 4.221 12 C 0.148 3.852 13 O -0.176 6.176 14 C -0.392 4.392 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.861 5.861 18 Si 0.942 3.058 19 H -0.273 1.273 20 H -0.278 1.278 21 H -0.268 1.268 22 C -0.179 4.179 23 C -0.067 4.067 24 H 0.105 0.895 25 H 0.097 0.903 26 H 0.119 0.881 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.402 0.598 32 H 0.111 0.889 33 H 0.132 0.868 34 H 0.270 0.730 35 H 0.121 0.879 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.924 3.209 -16.750 23.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.167 4.167 3 C 0.010 3.990 4 O -0.276 6.276 5 C -0.033 4.033 6 C 0.289 3.711 7 O -0.378 6.378 8 N -0.306 5.306 9 C -0.059 4.059 10 C -0.109 4.109 11 C -0.241 4.241 12 C 0.094 3.906 13 O -0.079 6.079 14 C -0.468 4.468 15 H 0.109 0.891 16 C -0.166 4.166 17 N -0.496 5.496 18 Si 0.766 3.234 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.199 4.199 23 C -0.087 4.087 24 H 0.123 0.877 25 H 0.116 0.884 26 H 0.137 0.863 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.236 0.764 32 H 0.129 0.871 33 H 0.149 0.851 34 H 0.080 0.920 35 H 0.139 0.861 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.550 1.986 -15.950 22.364 hybrid contribution 0.002 1.532 0.087 1.534 sum -15.548 3.518 -15.863 22.489 Atomic orbital electron populations 1.23835 0.95499 1.02313 1.00118 1.22727 0.95626 0.98245 1.00119 1.21619 0.88790 0.96248 0.92338 1.88067 1.44241 1.34900 1.60413 1.22176 0.93228 0.89290 0.98625 1.20239 0.82245 0.84486 0.84088 1.90742 1.71599 1.26402 1.49015 1.43052 1.32907 1.19424 1.35208 1.17226 0.97505 0.95462 0.95670 1.20473 0.98609 0.96657 0.95127 1.20971 1.02726 0.98344 1.02016 1.19427 0.88727 0.92914 0.89563 1.83993 1.48314 1.37939 1.37675 1.21314 1.28963 0.88502 1.08032 0.89062 1.25296 0.96034 0.98567 0.96700 1.70047 1.28022 1.24401 1.27149 0.85705 0.78144 0.79863 0.79655 1.19885 1.20279 1.19228 1.20159 1.02458 0.97685 0.99563 1.20760 0.94130 0.96402 0.97382 0.87692 0.88441 0.86332 0.92567 0.92089 0.90185 0.90234 0.76377 0.87123 0.85065 0.92001 0.86066 0.85282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.23 14.31 29.01 0.42 -0.82 16 2 C -0.15 -1.26 9.89 -36.02 -0.36 -1.62 16 3 C 0.09 0.72 6.35 36.01 0.23 0.95 16 4 O -0.36 -4.40 9.86 -55.14 -0.54 -4.94 16 5 C 0.05 0.46 6.42 36.01 0.23 0.69 16 6 C 0.50 7.29 7.75 -10.98 -0.09 7.21 16 7 O -0.50 -9.86 13.94 -14.36 -0.20 -10.06 16 8 N -0.66 -8.82 5.34 -9.82 -0.05 -8.88 16 9 C 0.03 0.60 6.30 -83.63 -0.53 0.07 16 10 C -0.09 -1.58 9.96 -39.42 -0.39 -1.97 16 11 C -0.22 -4.74 9.16 -39.42 -0.36 -5.10 16 12 C 0.15 3.63 6.65 -39.09 -0.26 3.37 16 13 O -0.18 -5.06 9.75 0.00 0.00 -5.06 16 14 C -0.39 -10.94 9.48 30.88 0.29 -10.65 16 15 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 17 N -0.86 -25.40 13.67 55.48 0.76 -24.64 16 18 Si 0.94 20.48 29.55 -169.99 -5.02 15.45 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 C -0.18 -4.01 9.98 -39.42 -0.39 -4.40 16 23 C -0.07 -1.35 8.69 -39.41 -0.34 -1.69 16 24 H 0.10 0.60 8.06 -52.49 -0.42 0.17 16 25 H 0.10 0.55 7.90 -52.49 -0.41 0.13 16 26 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 27 H 0.06 0.38 7.86 -51.93 -0.41 -0.03 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.40 3.61 8.82 -40.82 -0.36 3.25 16 32 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 33 H 0.13 2.77 5.63 -52.49 -0.30 2.48 16 34 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.12 2.64 8.06 -52.48 -0.42 2.22 16 36 H 0.13 2.58 6.23 -52.48 -0.33 2.25 16 LS Contribution 320.47 15.07 4.83 4.83 Total: -1.00 -34.88 320.47 -6.05 -40.93 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -4.17 Total: 5.39 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -1.65 Total: -13.01 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: 0.71 Total: -33.52 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.74 Total: -20.07 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.88 -6.05 -40.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124187347.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.655 kcal (2) G-P(sol) polarization free energy of solvation -34.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds