Wall clock time and date at job start Mon Mar 30 2020 02:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99645 * 2 1 4 4 O 1.42905 * 109.46872 * 135.00682 * 3 2 1 5 5 C 1.42899 * 114.00219 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47110 * 179.97438 * 5 4 3 7 7 O 1.21286 * 120.00228 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99575 * 179.97438 * 6 5 4 9 9 C 1.39986 * 119.99597 * 175.49172 * 8 6 5 10 10 C 1.38914 * 120.00328 * 215.12337 * 9 8 6 11 11 C 1.38004 * 120.00321 * 180.02562 * 10 9 8 12 12 C 1.38906 * 119.99637 * 0.02562 * 11 10 9 13 13 O 1.35780 * 119.99544 * 179.97438 * 12 11 10 14 14 C 1.34814 * 117.00386 * 5.34527 * 13 12 11 15 15 H 1.08001 * 119.99395 * 354.96428 * 14 13 12 16 16 C 1.38627 * 120.00361 * 174.96175 * 14 13 12 17 17 N 1.31571 * 119.99963 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00214 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47260 * 89.99770 * 18 16 14 20 20 H 1.48496 * 109.47559 * 210.00076 * 18 16 14 21 21 H 1.48502 * 109.47182 * 330.00306 * 18 16 14 22 22 C 1.38906 * 120.00519 * 0.25484 * 12 11 10 23 23 C 1.37994 * 120.00186 * 359.45181 * 22 12 11 24 24 H 1.07997 * 119.99831 * 179.97438 * 1 2 3 25 25 H 1.07995 * 120.00220 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.00220 * 180.02562 * 2 1 3 27 27 H 1.08992 * 109.47459 * 15.00383 * 3 2 1 28 28 H 1.09000 * 109.47176 * 255.00285 * 3 2 1 29 29 H 1.09008 * 109.46776 * 59.99882 * 5 4 3 30 30 H 1.08996 * 109.47195 * 299.99900 * 5 4 3 31 31 H 0.97003 * 119.99962 * 355.49585 * 8 6 5 32 32 H 1.08005 * 120.00053 * 0.02562 * 10 9 8 33 33 H 1.08002 * 120.00231 * 180.02562 * 11 10 9 34 34 H 0.97001 * 120.00332 * 179.97438 * 17 16 14 35 35 H 1.08003 * 119.99924 * 179.70124 * 22 12 11 36 36 H 1.08003 * 120.00725 * 180.27620 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1268 1.2413 0.9526 5 6 3.9085 2.4349 1.0320 6 6 4.9941 2.2567 2.0620 7 8 5.0893 1.2105 2.6680 8 7 5.8598 3.2598 2.3089 9 6 6.8081 3.1303 3.3305 10 6 7.1761 4.2395 4.0815 11 6 8.1114 4.1118 5.0882 12 6 8.6852 2.8743 5.3501 13 8 9.6058 2.7488 6.3403 14 6 9.8368 3.8364 7.1028 15 1 9.3606 4.7754 6.8622 16 6 10.6853 3.7494 8.1955 17 7 11.2650 2.6053 8.4888 18 14 11.0047 5.2561 9.2524 19 1 10.0039 5.3134 10.3481 20 1 12.3693 5.1740 9.8322 21 1 10.8946 6.4790 8.4171 22 6 8.3217 1.7663 4.5954 23 6 7.3820 1.8925 3.5927 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3855 2.1161 0.2660 28 1 2.4754 1.4869 -0.9927 29 1 3.2689 3.2696 1.3193 30 1 4.3587 2.6396 0.0608 31 1 5.8256 4.0715 1.7789 32 1 6.7302 5.2018 3.8775 33 1 8.3972 4.9741 5.6723 34 1 11.8591 2.5444 9.2532 35 1 8.7715 0.8051 4.7960 36 1 7.0960 1.0301 3.0088 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001124187347.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:08 Heat of formation + Delta-G solvation = -75.140796 kcal Electronic energy + Delta-G solvation = -19910.339496 eV Core-core repulsion = 16553.629710 eV Total energy + Delta-G solvation = -3356.709786 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.51583 -40.41115 -38.96104 -37.96827 -35.43438 -34.75382 -34.16162 -31.88140 -30.59839 -28.56273 -27.28897 -26.33849 -23.95659 -23.11820 -21.67796 -20.87117 -19.88243 -19.02590 -18.55488 -18.16170 -17.38505 -17.08494 -16.39263 -16.36084 -16.00124 -15.81951 -15.48874 -15.12236 -14.98707 -14.53917 -14.23760 -14.02286 -13.59999 -13.32342 -13.30817 -13.13728 -13.02279 -12.68024 -12.44626 -12.10449 -11.87576 -11.36661 -11.12062 -10.95491 -10.79842 -10.52289 -10.24151 -9.85495 -8.63396 -8.45080 -6.12872 0.50145 0.53299 1.19964 1.37239 1.45426 1.55291 1.60261 1.89007 2.19630 2.82246 3.09260 3.15365 3.51754 3.68737 4.05598 4.08066 4.13349 4.18944 4.26475 4.31441 4.48542 4.49018 4.61302 4.63017 4.75992 4.99231 5.06570 5.19042 5.29219 5.45662 5.55177 5.66487 5.67518 5.71530 6.02726 6.08962 6.18628 6.56293 6.98809 7.23390 7.79628 8.78230 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.049083 B = 0.002677 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.322184 B =10457.017321 C =10655.474360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.179 4.179 3 C 0.085 3.915 4 O -0.401 6.401 5 C 0.054 3.946 6 C 0.500 3.500 7 O -0.562 6.562 8 N -0.644 5.644 9 C 0.061 3.939 10 C -0.075 4.075 11 C -0.221 4.221 12 C 0.108 3.892 13 O -0.232 6.232 14 C -0.413 4.413 15 H 0.108 0.892 16 C -0.027 4.027 17 N -0.923 5.923 18 Si 1.022 2.978 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.247 1.247 22 C -0.193 4.193 23 C -0.076 4.076 24 H 0.112 0.888 25 H 0.114 0.886 26 H 0.103 0.897 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.430 0.570 32 H 0.164 0.836 33 H 0.134 0.866 34 H 0.272 0.728 35 H 0.109 0.891 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.710 6.552 -19.005 27.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.198 4.198 3 C 0.010 3.990 4 O -0.320 6.320 5 C -0.025 4.025 6 C 0.288 3.712 7 O -0.439 6.439 8 N -0.293 5.293 9 C -0.033 4.033 10 C -0.095 4.095 11 C -0.241 4.241 12 C 0.057 3.943 13 O -0.138 6.138 14 C -0.489 4.489 15 H 0.125 0.875 16 C -0.224 4.224 17 N -0.561 5.561 18 Si 0.841 3.159 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.171 1.171 22 C -0.213 4.213 23 C -0.096 4.096 24 H 0.130 0.870 25 H 0.132 0.868 26 H 0.121 0.879 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.269 0.731 32 H 0.181 0.819 33 H 0.152 0.848 34 H 0.081 0.919 35 H 0.128 0.872 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.395 5.375 -18.301 26.499 hybrid contribution 0.573 0.399 0.467 0.840 sum -17.823 5.774 -17.833 25.865 Atomic orbital electron populations 1.24054 0.95024 1.03497 0.97869 1.22820 0.96387 0.98256 1.02291 1.21801 0.88244 0.96478 0.92518 1.88014 1.45593 1.36492 1.61914 1.22299 0.92158 0.89535 0.98532 1.21286 0.82671 0.83242 0.83990 1.90735 1.73123 1.28794 1.51291 1.42961 1.31463 1.20685 1.34151 1.17368 0.96248 0.94278 0.95404 1.20870 0.96834 0.98772 0.93006 1.21157 1.02982 0.97019 1.02904 1.19876 0.89746 0.94881 0.89764 1.83962 1.51049 1.39053 1.39778 1.21892 1.29380 0.89112 1.08476 0.87459 1.26670 0.95503 1.02276 0.97973 1.70211 1.29990 1.27408 1.28521 0.84537 0.78049 0.75771 0.77536 1.19001 1.19871 1.17077 1.20259 1.03402 0.97149 1.00471 1.20853 0.93851 0.97914 0.96938 0.86997 0.86783 0.87910 0.90557 0.90168 0.86467 0.86274 0.73067 0.81857 0.84795 0.91905 0.87245 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 14.31 67.78 0.97 -0.95 16 2 C -0.18 -2.77 9.89 25.65 0.25 -2.52 16 3 C 0.08 1.15 6.35 71.24 0.45 1.60 16 4 O -0.40 -8.81 9.86 -129.94 -1.28 -10.09 16 5 C 0.05 0.80 6.42 71.24 0.46 1.26 16 6 C 0.50 12.92 7.75 87.66 0.68 13.60 16 7 O -0.56 -21.53 13.94 15.99 0.22 -21.31 16 8 N -0.64 -14.49 5.34 -303.37 -1.62 -16.11 16 9 C 0.06 2.00 6.30 38.17 0.24 2.24 16 10 C -0.08 -2.42 9.96 22.38 0.22 -2.20 16 11 C -0.22 -9.32 9.16 22.37 0.20 -9.12 16 12 C 0.11 5.52 6.65 22.59 0.15 5.67 16 13 O -0.23 -14.20 9.75 -22.91 -0.22 -14.42 16 14 C -0.41 -23.95 9.48 67.91 0.64 -23.31 16 15 H 0.11 5.56 5.20 -2.91 -0.02 5.55 16 16 C -0.03 -1.55 5.49 84.82 0.47 -1.08 16 17 N -0.92 -57.45 13.67 21.61 0.30 -57.15 16 18 Si 1.02 42.61 29.55 68.60 2.03 44.63 16 19 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 20 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 22 C -0.19 -9.08 9.98 22.37 0.22 -8.86 16 23 C -0.08 -3.05 8.69 22.38 0.19 -2.86 16 24 H 0.11 1.07 8.06 -2.91 -0.02 1.05 16 25 H 0.11 0.91 7.90 -2.91 -0.02 0.89 16 26 H 0.10 1.83 8.06 -2.91 -0.02 1.81 16 27 H 0.08 0.70 7.86 -2.39 -0.02 0.68 16 28 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.43 5.14 8.82 -92.71 -0.82 4.32 16 32 H 0.16 3.61 8.06 -2.91 -0.02 3.58 16 33 H 0.13 5.53 5.63 -2.91 -0.02 5.51 16 34 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 35 H 0.11 5.22 8.06 -2.91 -0.02 5.19 16 36 H 0.13 5.24 6.23 -2.91 -0.02 5.22 16 Total: -1.00 -83.67 320.47 4.87 -78.80 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.29 Total: 22.16 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 5.16 Total: -26.51 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -1.32 Total: -73.27 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -1.28 Total: -45.82 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -83.67 4.87 -78.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124187347.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.660 kcal (2) G-P(sol) polarization free energy of solvation -83.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds