Wall clock time and date at job start Mon Mar 30 2020 01:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32991 * 1 3 3 C 1.47099 * 120.00293 * 2 1 4 4 O 1.21613 * 119.99705 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00389 * 179.97438 * 3 2 1 6 6 C 1.46499 * 120.00065 * 180.02562 * 5 3 2 7 7 H 1.09005 * 109.41274 * 34.99977 * 6 5 3 8 8 C 1.52959 * 109.41471 * 154.86217 * 6 5 3 9 9 C 1.53226 * 109.40719 * 183.70675 * 8 6 5 10 10 C 1.51271 * 108.53235 * 305.36926 * 9 8 6 11 11 C 1.37881 * 120.84697 * 231.32532 * 10 9 8 12 12 N 1.31503 * 120.00229 * 0.02562 * 11 10 9 13 13 Si 1.86801 * 119.99597 * 180.02562 * 11 10 9 14 14 H 1.48504 * 109.47101 * 90.00386 * 13 11 10 15 15 H 1.48504 * 109.47287 * 209.99777 * 13 11 10 16 16 H 1.48500 * 109.47275 * 330.00169 * 13 11 10 17 17 C 1.51267 * 118.30348 * 51.34970 * 10 9 8 18 18 C 1.52961 * 109.41398 * 275.14107 * 6 5 3 19 19 C 1.50706 * 120.00207 * 180.02562 * 2 1 3 20 20 F 1.39900 * 109.46715 * 359.97438 * 19 2 1 21 21 F 1.39897 * 109.47068 * 119.99655 * 19 2 1 22 22 F 1.39895 * 109.47042 * 239.99965 * 19 2 1 23 23 H 1.08001 * 119.99722 * 359.97438 * 1 2 3 24 24 H 1.08005 * 120.00029 * 180.02562 * 1 2 3 25 25 H 0.97000 * 119.99549 * 0.02562 * 5 3 2 26 26 H 1.09000 * 109.47680 * 303.68229 * 8 6 5 27 27 H 1.08998 * 109.48369 * 63.70373 * 8 6 5 28 28 H 1.08997 * 109.63001 * 65.08096 * 9 8 6 29 29 H 1.08995 * 109.62777 * 185.46628 * 9 8 6 30 30 H 0.97006 * 120.00146 * 180.02562 * 12 11 10 31 31 H 1.08999 * 109.62600 * 68.36235 * 17 10 9 32 32 H 1.08996 * 109.62729 * 188.74637 * 17 10 9 33 33 H 1.09000 * 109.48318 * 296.27799 * 18 6 5 34 34 H 1.09007 * 109.47764 * 56.31705 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0655 1.2739 0.0000 4 8 1.4574 2.3271 0.0005 5 7 3.4132 1.2739 0.0005 6 6 4.1457 2.5426 0.0011 7 1 3.5973 3.2773 0.5907 8 6 5.5307 2.3298 0.6144 9 6 6.2617 3.6738 0.6999 10 6 6.2792 4.3000 -0.6770 11 6 7.4574 4.7505 -1.2338 12 7 8.5852 4.6380 -0.5668 13 14 7.4516 5.5206 -2.9356 14 1 7.2381 6.9853 -2.8154 15 1 8.7546 5.2633 -3.5999 16 1 6.3576 4.9256 -3.7445 17 6 4.9712 4.4199 -1.4272 18 6 4.2885 3.0479 -1.4356 19 6 2.0835 -1.3051 -0.0006 20 9 1.1743 -2.3684 -0.0005 21 9 2.8877 -1.3787 -1.1429 22 9 2.8878 -1.3797 1.1416 23 1 -0.5400 0.9353 0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 3.8982 0.4338 0.0005 26 1 5.4247 1.9095 1.6145 27 1 6.1031 1.6434 -0.0096 28 1 5.7389 4.3314 1.3945 29 1 7.2829 3.5138 1.0455 30 1 9.4140 4.9552 -0.9584 31 1 4.3289 5.1464 -0.9294 32 1 5.1641 4.7421 -2.4504 33 1 4.8911 2.3444 -2.0102 34 1 3.3014 3.1368 -1.8894 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144213452.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:15 Heat of formation + Delta-G solvation = -184.735602 kcal Electronic energy + Delta-G solvation = -22201.311406 eV Core-core repulsion = 18297.992493 eV Total energy + Delta-G solvation = -3903.318913 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.42665 -47.96677 -47.82959 -39.78565 -36.94542 -34.14786 -33.79980 -31.56541 -29.69159 -27.53831 -26.33267 -23.71194 -21.74037 -21.41445 -20.15193 -19.61836 -18.81196 -18.70658 -18.19928 -16.21777 -15.75839 -15.54020 -14.94901 -14.88826 -14.54505 -14.39684 -14.28943 -14.14413 -14.00122 -13.99310 -13.32603 -13.19329 -12.77142 -12.35073 -12.16778 -12.06074 -11.66890 -11.03528 -10.87346 -10.75161 -10.48372 -10.25628 -10.03986 -9.91360 -9.55651 -9.04614 -8.90277 -8.50727 -8.36435 -6.11129 -4.02148 0.75643 2.37386 3.05422 3.22361 3.28158 3.36094 3.37128 3.43646 3.81221 4.15541 4.38073 4.60392 5.06017 5.16375 5.41796 5.53569 5.72140 5.85159 6.15649 6.37497 6.46600 6.68198 6.70410 6.86653 6.93509 7.08328 7.18746 7.41826 7.63276 7.63742 7.70366 7.83634 8.27333 8.36860 8.94926 9.53593 10.98324 Molecular weight = 277.10amu Principal moments of inertia in cm(-1) A = 0.030878 B = 0.004658 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.571611 B = 6009.677191 C = 6194.104380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 C -0.266 4.266 3 C 0.559 3.441 4 O -0.531 6.531 5 N -0.713 5.713 6 C 0.153 3.847 7 H 0.082 0.918 8 C -0.116 4.116 9 C 0.014 3.986 10 C -0.489 4.489 11 C 0.076 3.924 12 N -0.890 5.890 13 Si 0.887 3.113 14 H -0.278 1.278 15 H -0.290 1.290 16 H -0.264 1.264 17 C -0.019 4.019 18 C -0.113 4.113 19 C 0.501 3.499 20 F -0.177 7.177 21 F -0.171 7.171 22 F -0.172 7.172 23 H 0.144 0.856 24 H 0.132 0.868 25 H 0.393 0.607 26 H 0.037 0.963 27 H 0.055 0.945 28 H 0.007 0.993 29 H 0.061 0.939 30 H 0.264 0.736 31 H 0.019 0.981 32 H 0.036 0.964 33 H 0.052 0.948 34 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.664 -12.465 0.964 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.271 4.271 3 C 0.344 3.656 4 O -0.410 6.410 5 N -0.361 5.361 6 C 0.051 3.949 7 H 0.100 0.900 8 C -0.154 4.154 9 C -0.024 4.024 10 C -0.508 4.508 11 C -0.126 4.126 12 N -0.528 5.528 13 Si 0.715 3.285 14 H -0.204 1.204 15 H -0.217 1.217 16 H -0.189 1.189 17 C -0.057 4.057 18 C -0.152 4.152 19 C 0.447 3.553 20 F -0.159 7.159 21 F -0.153 7.153 22 F -0.153 7.153 23 H 0.162 0.838 24 H 0.150 0.850 25 H 0.228 0.772 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.025 0.975 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.819 -11.693 0.966 18.128 hybrid contribution 0.471 -0.419 -0.956 1.145 sum -13.347 -12.112 0.009 18.024 Atomic orbital electron populations 1.25081 0.93676 1.05634 0.81595 1.22356 0.97125 0.92370 1.15237 1.17599 0.82914 0.87545 0.77528 1.90822 1.68120 1.31302 1.50759 1.46455 1.05483 1.11447 1.72758 1.21177 0.92591 0.82815 0.98305 0.89972 1.21956 0.93832 1.02075 0.97535 1.19332 0.97320 0.89937 0.95803 1.20051 0.90817 1.38780 1.01151 1.24840 0.95030 0.95239 0.97502 1.69829 0.98596 1.46360 1.37991 0.86678 0.76985 0.79881 0.84924 1.20368 1.21658 1.18947 1.19791 0.96191 0.92245 0.97434 1.21901 0.98501 1.00193 0.94561 1.18468 0.77850 0.84839 0.74191 1.93162 1.66936 1.59490 1.96298 1.93254 1.74537 1.96661 1.50805 1.93245 1.74569 1.96665 1.50852 0.83797 0.85034 0.77244 0.94439 0.92591 0.97493 0.92020 0.92576 0.96213 0.94532 0.92893 0.94444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.18 13.71 28.91 0.40 0.21 16 2 C -0.27 -3.13 5.46 -102.85 -0.56 -3.69 16 3 C 0.56 8.94 7.66 -12.67 -0.10 8.84 16 4 O -0.53 -10.07 15.88 5.27 0.08 -9.98 16 5 N -0.71 -11.87 4.94 -55.03 -0.27 -12.14 16 6 C 0.15 3.03 2.35 -67.97 -0.16 2.87 16 7 H 0.08 1.75 7.57 -51.93 -0.39 1.36 16 8 C -0.12 -2.38 5.40 -26.64 -0.14 -2.53 16 9 C 0.01 0.34 5.96 -27.49 -0.16 0.18 16 10 C -0.49 -12.79 5.51 -98.92 -0.55 -13.33 16 11 C 0.08 2.08 5.46 -17.82 -0.10 1.98 16 12 N -0.89 -25.35 12.73 55.43 0.71 -24.65 16 13 Si 0.89 21.04 27.53 -169.99 -4.68 16.36 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.26 -6.09 6.11 56.52 0.35 -5.74 16 17 C -0.02 -0.44 5.60 -27.48 -0.15 -0.59 16 18 C -0.11 -2.38 5.50 -26.63 -0.15 -2.53 16 19 C 0.50 5.62 2.81 36.01 0.10 5.72 16 20 F -0.18 -1.75 15.91 2.25 0.04 -1.71 16 21 F -0.17 -2.10 16.41 2.25 0.04 -2.06 16 22 F -0.17 -2.06 16.40 2.25 0.04 -2.02 16 23 H 0.14 1.18 7.49 -52.49 -0.39 0.79 16 24 H 0.13 0.71 7.04 -52.48 -0.37 0.34 16 25 H 0.39 5.89 6.20 -40.82 -0.25 5.63 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.06 1.64 7.08 -51.93 -0.37 1.27 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.04 0.86 4.59 -51.93 -0.24 0.62 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.04 0.77 8.14 -51.92 -0.42 0.34 16 LS Contribution 292.69 15.07 4.41 4.41 Total: -1.00 -29.40 292.69 -4.96 -34.35 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -3.74 Total: 0.30 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -1.57 Total: -2.86 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.43 Total: -36.78 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.11 Total: -5.80 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.68 Total: 16.36 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.40 -4.96 -34.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144213452.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.382 kcal (2) G-P(sol) polarization free energy of solvation -29.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds