Wall clock time and date at job start Mon Mar 30 2020 01:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50703 * 119.99373 * 2 1 4 4 H 1.08996 * 109.47116 * 0.02562 * 3 2 1 5 5 C 1.53005 * 109.46791 * 239.99910 * 3 2 1 6 6 O 1.42899 * 109.47077 * 305.00209 * 5 3 2 7 7 N 1.46501 * 109.46870 * 120.00400 * 3 2 1 8 8 C 1.34780 * 119.99510 * 204.99854 * 7 3 2 9 9 O 1.21590 * 120.00046 * 359.97438 * 8 7 3 10 10 C 1.47535 * 119.99849 * 180.02562 * 8 7 3 11 11 C 1.39666 * 120.19596 * 0.02562 * 10 8 7 12 12 C 1.37830 * 119.92216 * 179.97438 * 11 10 8 13 13 C 1.38580 * 120.32044 * 359.97438 * 12 11 10 14 14 C 1.38026 * 120.40073 * 0.02562 * 13 12 11 15 15 C 1.38831 * 120.07207 * 0.02562 * 14 13 12 16 16 O 1.35519 * 120.16246 * 180.02562 * 15 14 13 17 17 C 1.34818 * 117.00123 * 354.39673 * 16 15 14 18 18 H 1.08011 * 119.99422 * 5.06547 * 17 16 15 19 19 C 1.38693 * 120.00642 * 185.06428 * 17 16 15 20 20 N 1.31525 * 119.99570 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00271 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46871 * 60.00351 * 21 19 17 23 23 H 1.48501 * 109.47057 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47457 * 300.00216 * 21 19 17 25 25 H 1.07994 * 120.00288 * 359.97438 * 1 2 3 26 26 H 1.08006 * 119.99634 * 180.02562 * 1 2 3 27 27 H 1.07994 * 120.00288 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.46758 * 65.00501 * 5 3 2 29 29 H 1.08994 * 109.47168 * 185.00371 * 5 3 2 30 30 H 0.96700 * 113.99761 * 180.02562 * 6 5 3 31 31 H 0.96994 * 120.00085 * 24.99659 * 7 3 2 32 32 H 1.08003 * 120.04115 * 359.97438 * 11 10 8 33 33 H 1.07992 * 119.84383 * 180.02562 * 12 11 10 34 34 H 1.07999 * 119.79696 * 180.28209 * 13 12 11 35 35 H 1.07998 * 119.96126 * 180.02562 * 14 13 12 36 36 H 0.96998 * 119.99271 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9431 1.3863 -1.2493 6 8 3.7919 0.2383 -1.3095 7 7 2.9057 1.3828 1.1961 8 6 3.2691 2.5841 1.6876 9 8 2.8982 3.6032 1.1380 10 6 4.1178 2.6623 2.8919 11 6 4.5475 1.4942 3.5255 12 6 5.3406 1.5738 4.6499 13 6 5.7153 2.8084 5.1558 14 6 5.2982 3.9712 4.5401 15 6 4.4980 3.9102 3.4073 16 8 4.0879 5.0507 2.8011 17 6 4.3936 6.2128 3.4124 18 1 5.0112 6.2107 4.2984 19 6 3.9150 7.4110 2.9036 20 7 3.1625 7.4135 1.8248 21 14 4.3380 9.0211 3.7510 22 1 5.8120 9.2006 3.7652 23 1 3.7096 10.1477 3.0154 24 1 3.8291 8.9949 5.1458 25 1 -0.5400 0.9352 0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 1.8501 -0.9352 -0.0004 28 1 2.3113 1.4180 -2.1370 29 1 3.5539 2.2879 -1.2057 30 1 4.3790 0.2231 -2.0777 31 1 3.2019 0.5698 1.6344 32 1 4.2586 0.5296 3.1350 33 1 5.6725 0.6698 5.1386 34 1 6.3407 2.8609 6.0347 35 1 5.5947 4.9296 4.9402 36 1 2.8275 8.2515 1.4693 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148559400.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:11 Heat of formation + Delta-G solvation = -58.647774 kcal Electronic energy + Delta-G solvation = -21229.019751 eV Core-core repulsion = 17873.025157 eV Total energy + Delta-G solvation = -3355.994595 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.66581 -38.44875 -36.84946 -36.28243 -34.81849 -32.49295 -32.29561 -30.45210 -28.90159 -28.06672 -25.36769 -23.69413 -22.37067 -21.33307 -20.04967 -19.61320 -18.01614 -17.45693 -17.26828 -16.15419 -15.94008 -14.99725 -14.66522 -14.44043 -14.23463 -14.17802 -13.86789 -13.74971 -13.24536 -12.93602 -12.73035 -12.48649 -12.15296 -11.80034 -11.69785 -11.29189 -11.10934 -10.94270 -10.86872 -10.75010 -10.46526 -9.98031 -9.60707 -9.52108 -8.86183 -8.78715 -8.51521 -8.23884 -7.28595 -6.43095 -4.02958 1.74514 2.16509 2.34868 3.12405 3.14568 3.16813 3.75696 3.85906 3.94812 4.38908 4.67218 4.78819 5.08961 5.18253 5.20937 5.35591 5.45290 5.51307 5.60051 5.73144 5.77058 5.84884 5.98104 6.15051 6.16511 6.55512 6.59306 6.69116 6.71960 6.93953 7.02540 7.09130 7.26422 7.31266 7.66906 7.72127 7.94054 8.19496 8.96668 9.12684 9.69509 10.70817 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016988 B = 0.005432 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.806400 B = 5153.315453 C = 6261.795173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.151 4.151 3 C 0.179 3.821 4 H 0.101 0.899 5 C 0.066 3.934 6 O -0.569 6.569 7 N -0.729 5.729 8 C 0.555 3.445 9 O -0.506 6.506 10 C -0.226 4.226 11 C -0.037 4.037 12 C -0.231 4.231 13 C -0.051 4.051 14 C -0.239 4.239 15 C 0.189 3.811 16 O -0.124 6.124 17 C -0.404 4.404 18 H 0.093 0.907 19 C 0.045 3.955 20 N -0.834 5.834 21 Si 0.941 3.059 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.116 0.884 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.375 0.625 31 H 0.395 0.605 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.131 0.869 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.057 -12.707 -1.755 12.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.170 4.170 3 C 0.074 3.926 4 H 0.119 0.881 5 C -0.013 4.013 6 O -0.374 6.374 7 N -0.384 5.384 8 C 0.345 3.655 9 O -0.380 6.380 10 C -0.231 4.231 11 C -0.056 4.056 12 C -0.250 4.250 13 C -0.069 4.069 14 C -0.258 4.258 15 C 0.130 3.870 16 O -0.023 6.023 17 C -0.480 4.480 18 H 0.110 0.890 19 C -0.163 4.163 20 N -0.466 5.466 21 Si 0.765 3.235 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 H 0.117 0.883 26 H 0.118 0.882 27 H 0.134 0.866 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.221 0.779 31 H 0.230 0.770 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.149 0.851 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.924 -11.793 -2.002 11.998 hybrid contribution 0.739 0.472 0.170 0.893 sum -0.185 -11.322 -1.832 11.471 Atomic orbital electron populations 1.23933 0.95816 1.02072 0.99972 1.22952 0.95692 0.98236 1.00100 1.20017 0.91617 0.96404 0.84540 0.88085 1.22654 0.92916 0.88473 0.97245 1.86437 1.55769 1.44640 1.50539 1.45839 1.54347 1.08635 1.29546 1.18273 0.80241 0.82884 0.84097 1.90934 1.53775 1.33676 1.59632 1.18843 1.10792 0.91786 1.01668 1.20785 0.94885 0.95604 0.94277 1.20468 1.07050 0.96972 1.00493 1.20898 0.96287 0.92303 0.97458 1.21149 1.05716 0.99188 0.99743 1.19281 0.90659 0.87236 0.89840 1.84174 1.64257 1.10805 1.43017 1.21447 1.33104 0.81705 1.11702 0.88965 1.25373 0.95742 0.98925 0.96252 1.70123 1.29369 1.27803 1.19274 0.85800 0.78986 0.79685 0.79057 1.19392 1.20182 1.19375 0.88312 0.88190 0.86570 0.93247 0.92401 0.77934 0.77045 0.86976 0.87273 0.87200 0.85100 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 14.32 29.01 0.42 -1.54 16 2 C -0.15 -1.85 8.52 -36.03 -0.31 -2.16 16 3 C 0.18 2.74 2.73 -69.08 -0.19 2.55 16 4 H 0.10 1.73 7.22 -51.93 -0.37 1.35 16 5 C 0.07 0.93 6.84 37.16 0.25 1.19 16 6 O -0.57 -7.15 13.01 -35.23 -0.46 -7.61 16 7 N -0.73 -12.48 4.97 -55.97 -0.28 -12.75 16 8 C 0.56 12.43 7.73 -12.47 -0.10 12.33 16 9 O -0.51 -13.79 14.83 -16.57 -0.25 -14.04 16 10 C -0.23 -5.02 5.89 -104.81 -0.62 -5.64 16 11 C -0.04 -0.65 9.53 -39.20 -0.37 -1.03 16 12 C -0.23 -3.89 10.03 -39.60 -0.40 -4.28 16 13 C -0.05 -0.91 10.03 -39.53 -0.40 -1.31 16 14 C -0.24 -5.20 9.16 -39.44 -0.36 -5.56 16 15 C 0.19 4.77 6.66 -38.60 -0.26 4.51 16 16 O -0.12 -3.69 7.84 -21.06 -0.17 -3.86 16 17 C -0.40 -11.49 9.49 30.90 0.29 -11.20 16 18 H 0.09 2.38 5.21 -52.48 -0.27 2.11 16 19 C 0.04 1.25 5.49 -17.51 -0.10 1.15 16 20 N -0.83 -25.19 13.67 55.48 0.76 -24.43 16 21 Si 0.94 20.58 29.55 -169.99 -5.02 15.56 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H 0.10 1.09 7.83 -52.49 -0.41 0.68 16 26 H 0.10 0.88 8.06 -52.48 -0.42 0.46 16 27 H 0.12 1.33 7.95 -52.49 -0.42 0.91 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.37 3.12 9.12 45.56 0.42 3.54 16 31 H 0.39 5.79 6.62 -40.82 -0.27 5.52 16 32 H 0.11 1.59 6.40 -52.48 -0.34 1.25 16 33 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 36 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 316.37 15.07 4.77 4.77 Total: -1.00 -34.97 316.37 -5.99 -40.96 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -3.21 Total: 12.39 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -2.13 Total: -10.98 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.48 Total: -37.19 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.87 Total: -25.51 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.97 -5.99 -40.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148559400.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.691 kcal (2) G-P(sol) polarization free energy of solvation -34.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds