Wall clock time and date at job start Mon Mar 30 2020 02:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53913 * 1 3 3 H 1.10532 * 107.32758 * 2 1 4 4 C 1.51135 * 109.72156 * 241.66206 * 2 1 3 5 5 C 1.45986 * 116.80514 * 155.47978 * 4 2 1 6 6 N 1.49896 * 108.56367 * 53.61371 * 5 4 2 7 7 S 1.65575 * 120.75775 * 110.28270 * 6 5 4 8 8 O 1.42106 * 106.40133 * 203.54023 * 7 6 5 9 9 O 1.42096 * 106.40380 * 336.46443 * 7 6 5 10 10 C 1.76199 * 107.21598 * 90.00286 * 7 6 5 11 11 H 1.08002 * 120.00442 * 359.97438 * 10 7 6 12 12 C 1.37881 * 120.00191 * 179.97438 * 10 7 6 13 13 N 1.31525 * 119.99537 * 0.02562 * 12 10 7 14 14 Si 1.86799 * 120.00351 * 179.97438 * 12 10 7 15 15 H 1.48497 * 109.47034 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.46922 * 119.99972 * 14 12 10 17 17 H 1.48503 * 109.46846 * 240.00131 * 14 12 10 18 18 C 1.43383 * 118.59962 * 290.15748 * 6 5 4 19 19 C 1.54506 * 116.28823 * 92.88938 * 18 6 5 20 20 C 1.48873 * 109.60113 * 118.11735 * 2 1 3 21 21 C 1.52503 * 113.29050 * 87.39503 * 20 2 1 22 22 O 1.44649 * 107.26609 * 329.58794 * 20 2 1 23 23 H 1.08999 * 109.46999 * 178.33683 * 1 2 3 24 24 H 1.08998 * 109.47427 * 298.33143 * 1 2 3 25 25 H 1.09004 * 109.47129 * 58.33636 * 1 2 3 26 26 H 1.11657 * 105.73048 * 39.24852 * 4 2 1 27 27 H 1.07736 * 114.12408 * 286.08576 * 4 2 1 28 28 H 1.09209 * 109.71208 * 173.53986 * 5 4 2 29 29 H 1.09173 * 109.76581 * 293.59297 * 5 4 2 30 30 H 0.96997 * 119.99340 * 180.02562 * 13 12 10 31 31 H 1.09025 * 108.18291 * 330.65080 * 18 6 5 32 32 H 1.09199 * 107.89173 * 214.53316 * 18 6 5 33 33 H 1.09255 * 109.28725 * 195.97228 * 19 18 6 34 34 H 1.09236 * 109.34664 * 77.16735 * 19 18 6 35 35 H 1.08999 * 109.47374 * 59.99824 * 21 20 2 36 36 H 1.08994 * 109.47290 * 180.02562 * 21 20 2 37 37 H 1.09007 * 109.46895 * 299.99927 * 21 20 2 38 38 H 0.96697 * 113.99700 * 179.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5391 0.0000 0.0000 3 1 1.8683 1.0552 0.0000 4 6 2.0491 -0.6753 -1.2522 5 6 3.3872 -0.3036 -1.7022 6 7 4.3432 -0.4917 -0.5631 7 16 5.4725 -1.7022 -0.5964 8 8 5.8128 -1.9707 0.7569 9 8 4.9724 -2.6932 -1.4835 10 6 6.9212 -1.0432 -1.3524 11 1 6.9356 -0.0171 -1.6891 12 6 8.0366 -1.8374 -1.5141 13 7 8.0189 -3.0871 -1.1045 14 14 9.5723 -1.1390 -2.3162 15 1 9.3357 0.2794 -2.6868 16 1 10.7085 -1.2194 -1.3635 17 1 9.8931 -1.9221 -3.5365 18 6 4.2614 0.4009 0.5560 19 6 3.3755 -0.0596 1.7352 20 6 2.0386 -0.6609 1.2369 21 6 2.1809 -2.1729 1.0973 22 8 1.0604 -0.4232 2.2757 23 1 -0.3633 -1.0272 -0.0298 24 1 -0.3634 0.4877 0.9045 25 1 -0.3633 0.5395 -0.8747 26 1 1.3678 -0.3454 -2.0730 27 1 1.9413 -1.7473 -1.2495 28 1 3.6832 -0.9376 -2.5408 29 1 3.3928 0.7405 -2.0211 30 1 8.8038 -3.6457 -1.2179 31 1 3.8883 1.3610 0.1989 32 1 5.2739 0.5599 0.9330 33 1 3.1624 0.7950 2.3816 34 1 3.9110 -0.8129 2.3175 35 1 2.8852 -2.3992 0.2969 36 1 2.5484 -2.5913 2.0342 37 1 1.2101 -2.6089 0.8611 38 1 1.2903 -0.8147 3.1294 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951812.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:43 Heat of formation + Delta-G solvation = -146.646743 kcal Electronic energy + Delta-G solvation = -21836.793174 eV Core-core repulsion = 18612.426610 eV Total energy + Delta-G solvation = -3224.366565 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.63326 -36.00418 -35.31059 -33.94468 -33.53225 -33.05362 -31.55515 -29.11349 -27.53996 -26.11767 -23.74894 -23.40726 -21.24430 -18.81495 -18.63413 -17.21349 -16.36838 -16.08246 -15.77380 -15.19285 -14.90624 -14.47826 -13.99654 -13.59851 -13.32293 -13.22933 -12.90488 -12.55351 -12.33853 -12.17111 -12.01639 -11.50370 -11.31055 -11.25594 -11.24179 -11.07323 -10.96590 -10.74988 -10.59637 -10.54847 -10.27721 -10.12666 -9.85864 -9.80997 -9.56570 -9.26956 -8.89894 -8.20440 -6.70963 -5.32965 2.26810 3.04049 3.12425 3.19762 4.04200 4.38528 4.45354 4.62710 4.79092 4.98459 5.14299 5.38029 5.40374 5.45435 5.58122 5.66627 5.70013 5.81889 5.91003 5.97034 6.02030 6.05087 6.09737 6.20930 6.23865 6.32481 6.36194 6.47409 6.51677 6.55853 6.62198 6.71862 6.88979 7.31626 7.63854 7.82194 7.97297 8.88223 10.22477 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.035299 B = 0.006225 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.036606 B = 4496.726335 C = 4625.568665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.063 4.063 3 H 0.074 0.926 4 C -0.134 4.134 5 C 0.130 3.870 6 N -1.007 6.007 7 S 2.714 3.286 8 O -1.001 7.001 9 O -1.005 7.005 10 C -1.023 5.023 11 H 0.102 0.898 12 C 0.132 3.868 13 N -0.846 5.846 14 Si 0.919 3.081 15 H -0.262 1.262 16 H -0.271 1.271 17 H -0.270 1.270 18 C 0.138 3.862 19 C -0.169 4.169 20 C 0.147 3.853 21 C -0.177 4.177 22 O -0.575 6.575 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.290 0.710 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.275 6.909 2.080 12.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.081 4.081 3 H 0.092 0.908 4 C -0.173 4.173 5 C 0.005 3.995 6 N -0.841 5.841 7 S 2.815 3.185 8 O -0.991 6.991 9 O -0.995 6.995 10 C -1.156 5.156 11 H 0.120 0.880 12 C -0.086 4.086 13 N -0.476 5.476 14 Si 0.743 3.257 15 H -0.186 1.186 16 H -0.196 1.196 17 H -0.196 1.196 18 C 0.010 3.990 19 C -0.209 4.209 20 C 0.108 3.892 21 C -0.234 4.234 22 O -0.381 6.381 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.112 0.888 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -10.661 6.200 1.929 12.483 hybrid contribution 1.540 0.433 -0.213 1.614 sum -9.121 6.633 1.715 11.408 Atomic orbital electron populations 1.21833 0.94368 1.01569 1.01216 1.20009 0.96090 0.99805 0.92206 0.90787 1.20466 0.97421 1.02349 0.97060 1.20619 0.87951 1.01644 0.89266 1.58125 1.49967 1.51675 1.24328 1.00563 0.72992 0.71385 0.73560 1.93353 1.84190 1.83495 1.38105 1.93347 1.81573 1.57266 1.67324 1.30707 1.18439 1.09340 1.57143 0.87975 1.24766 0.99514 0.93416 0.90863 1.69909 1.32096 1.06349 1.39270 0.86155 0.80277 0.80052 0.79241 1.18586 1.19559 1.19554 1.20322 0.99692 0.92555 0.86433 1.23535 0.96066 1.02060 0.99194 1.20951 0.86789 0.93922 0.87530 1.22492 1.02260 0.95621 1.03065 1.86936 1.48927 1.79957 1.22283 0.93197 0.91428 0.93555 0.92486 0.90645 0.88833 0.91733 0.89957 0.92073 0.91164 0.90487 0.90446 0.91285 0.92184 0.92104 0.78711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 8.50 37.63 0.32 -1.31 16 2 C -0.06 -0.86 1.84 -93.11 -0.17 -1.04 16 3 H 0.07 0.99 6.87 -51.05 -0.35 0.63 16 4 C -0.13 -1.97 3.85 -30.99 -0.12 -2.08 16 5 C 0.13 2.13 5.92 -5.47 -0.03 2.10 16 6 N -1.01 -19.85 2.21 -116.48 -0.26 -20.10 16 7 S 2.71 71.07 4.23 -107.50 -0.45 70.61 16 8 O -1.00 -28.43 17.17 -57.17 -0.98 -29.41 16 9 O -1.00 -28.70 16.83 -57.17 -0.96 -29.66 16 10 C -1.02 -28.20 9.75 30.60 0.30 -27.90 16 11 H 0.10 2.60 7.81 -52.49 -0.41 2.19 16 12 C 0.13 3.69 5.46 -17.81 -0.10 3.60 16 13 N -0.85 -24.91 13.19 55.43 0.73 -24.18 16 14 Si 0.92 20.55 29.54 -169.99 -5.02 15.53 16 15 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 16 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 18 C 0.14 2.36 4.69 -4.90 -0.02 2.34 16 19 C -0.17 -2.61 5.48 -24.97 -0.14 -2.74 16 20 C 0.15 2.17 0.72 -91.93 -0.07 2.11 16 21 C -0.18 -2.88 7.59 36.90 0.28 -2.60 16 22 O -0.58 -7.52 10.64 -35.23 -0.37 -7.89 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.86 6.95 -51.93 -0.36 0.49 16 25 H 0.05 0.50 8.03 -51.93 -0.42 0.08 16 26 H 0.06 0.69 7.84 -50.39 -0.40 0.29 16 27 H 0.07 1.20 6.38 -52.63 -0.34 0.87 16 28 H 0.09 1.64 7.31 -51.81 -0.38 1.26 16 29 H 0.06 0.88 8.14 -51.83 -0.42 0.45 16 30 H 0.29 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.06 0.87 7.09 -51.91 -0.37 0.50 16 32 H 0.07 1.26 7.86 -51.82 -0.41 0.86 16 33 H 0.08 1.01 8.02 -51.78 -0.42 0.59 16 34 H 0.08 1.32 7.71 -51.80 -0.40 0.92 16 35 H 0.07 1.33 5.32 -51.93 -0.28 1.05 16 36 H 0.06 0.93 7.96 -51.93 -0.41 0.52 16 37 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 38 H 0.37 3.71 8.95 45.56 0.41 4.12 16 LS Contribution 305.76 15.07 4.61 4.61 Total: -1.00 -33.94 305.76 -7.38 -41.32 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -4.92 Total: 6.72 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 0.25 Total: -27.54 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.47 Total: -44.28 kcal Atomic # 8 Polarization: -64.64 SS G_CDS: -2.32 Total: -66.96 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 71.07 SS G_CDS: -0.45 Total: 70.61 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.94 -7.38 -41.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951812.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.328 kcal (2) G-P(sol) polarization free energy of solvation -33.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds