Wall clock time and date at job start Mon Mar 30 2020 02:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 108.44715 * 2 1 4 4 C 1.47094 * 108.38931 * 117.61957 * 2 1 3 5 5 C 1.54866 * 110.32605 * 183.97027 * 4 2 1 6 6 N 1.44524 * 109.52084 * 288.75592 * 5 4 2 7 7 S 1.65601 * 118.60328 * 270.76719 * 6 5 4 8 8 O 1.42091 * 106.40396 * 23.62603 * 7 6 5 9 9 O 1.42104 * 106.40355 * 156.55001 * 7 6 5 10 10 C 1.76201 * 107.21824 * 270.08512 * 7 6 5 11 11 H 1.08000 * 119.99466 * 359.97438 * 10 7 6 12 12 C 1.37875 * 120.00568 * 180.02562 * 10 7 6 13 13 N 1.31518 * 119.99417 * 359.97438 * 12 10 7 14 14 Si 1.86794 * 120.00610 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47038 * 89.99564 * 14 12 10 16 16 H 1.48495 * 109.47302 * 210.00219 * 14 12 10 17 17 H 1.48501 * 109.46750 * 330.00044 * 14 12 10 18 18 C 1.47600 * 122.75482 * 90.85298 * 6 5 4 19 19 C 1.53943 * 112.07762 * 317.71490 * 18 6 5 20 20 C 1.50890 * 110.09121 * 319.47551 * 19 18 6 21 21 C 1.52994 * 109.48793 * 331.89590 * 20 19 18 22 22 O 1.42905 * 109.48640 * 211.85137 * 20 19 18 23 23 H 1.09002 * 109.46433 * 177.69174 * 1 2 3 24 24 H 1.09000 * 109.46991 * 297.68861 * 1 2 3 25 25 H 1.08994 * 109.47041 * 57.69120 * 1 2 3 26 26 H 1.08999 * 109.33052 * 304.22740 * 4 2 1 27 27 H 1.08999 * 109.33214 * 63.88674 * 4 2 1 28 28 H 1.09006 * 109.44585 * 48.77497 * 5 4 2 29 29 H 1.08993 * 109.45386 * 168.69751 * 5 4 2 30 30 H 0.96999 * 119.99708 * 179.97438 * 13 12 10 31 31 H 1.08994 * 108.95260 * 197.06859 * 18 6 5 32 32 H 1.09010 * 108.94257 * 78.34997 * 18 6 5 33 33 H 1.09006 * 109.37069 * 79.66280 * 19 18 6 34 34 H 1.08998 * 109.37392 * 199.40818 * 19 18 6 35 35 H 1.08996 * 109.47341 * 76.76225 * 21 20 19 36 36 H 1.08996 * 109.47070 * 196.76351 * 21 20 19 37 37 H 1.09003 * 109.47358 * 316.76563 * 21 20 19 38 38 H 0.96695 * 114.00519 * 59.99950 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8749 1.0340 0.0000 4 6 1.9940 -0.6471 1.2368 5 6 3.5385 -0.5828 1.3307 6 7 4.1193 -1.4776 0.3557 7 16 4.4054 -3.0490 0.7930 8 8 3.5206 -3.3338 1.8677 9 8 4.4328 -3.8021 -0.4117 10 6 6.0353 -3.1165 1.4590 11 1 6.6338 -2.2192 1.5137 12 6 6.5469 -4.3150 1.9094 13 7 5.8181 -5.4077 1.8423 14 14 8.2745 -4.3865 2.6162 15 1 8.2208 -4.1440 4.0802 16 1 8.8601 -5.7264 2.3575 17 1 9.1160 -3.3459 1.9726 18 6 4.4698 -1.0490 -1.0126 19 6 3.3854 -0.1492 -1.6326 20 6 2.0144 -0.6723 -1.2810 21 6 2.0846 -2.1858 -1.0688 22 8 1.1059 -0.3816 -2.3450 23 1 -0.3632 -1.0269 -0.0414 24 1 -0.3633 0.4775 0.9100 25 1 -0.3633 0.5492 -0.8685 26 1 1.5589 -0.1369 2.0961 27 1 1.6783 -1.6904 1.2385 28 1 3.8720 0.4360 1.1331 29 1 3.8540 -0.8800 2.3308 30 1 6.1782 -6.2510 2.1588 31 1 4.5972 -1.9321 -1.6385 32 1 5.4104 -0.4990 -0.9811 33 1 3.4945 0.8653 -1.2490 34 1 3.4996 -0.1399 -2.7166 35 1 2.5255 -2.3960 -0.0944 36 1 1.0796 -2.6055 -1.1110 37 1 2.6987 -2.6342 -1.8497 38 1 1.3531 -0.7765 -3.1923 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951813.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:44 Heat of formation + Delta-G solvation = -155.290502 kcal Electronic energy + Delta-G solvation = -22098.026335 eV Core-core repulsion = 18873.284949 eV Total energy + Delta-G solvation = -3224.741386 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.33866 -37.51947 -37.15969 -36.12790 -35.25350 -35.06585 -32.77899 -29.63971 -29.02359 -28.24339 -25.65043 -24.40610 -22.16954 -20.81117 -19.98281 -18.94197 -18.31680 -17.63189 -17.32854 -17.03406 -16.59434 -16.10069 -15.57029 -15.29208 -14.59515 -14.37017 -14.22640 -14.02070 -13.98461 -13.40743 -13.33442 -13.09474 -13.03925 -12.97897 -12.71302 -12.54972 -12.42957 -12.38400 -12.30540 -11.98418 -11.81557 -11.75692 -11.37706 -11.27580 -10.99927 -10.91348 -10.73242 -9.56237 -8.76240 -7.51265 0.32928 1.31184 1.31639 1.47835 2.18534 2.55023 2.82042 3.23973 3.67009 3.73059 3.82428 4.00441 4.13423 4.16531 4.20495 4.37725 4.41435 4.54266 4.66957 4.71127 4.75356 4.79541 4.85815 4.91487 5.04779 5.07071 5.14136 5.16358 5.20273 5.24892 5.36418 5.45834 5.53438 5.57689 5.87358 6.12756 6.75920 6.93593 8.18019 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.035375 B = 0.006445 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.327738 B = 4343.714066 C = 4422.138364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.073 4.073 3 H 0.093 0.907 4 C -0.141 4.141 5 C 0.120 3.880 6 N -0.998 5.998 7 S 2.719 3.281 8 O -1.039 7.039 9 O -1.036 7.036 10 C -1.052 5.052 11 H 0.117 0.883 12 C 0.069 3.931 13 N -0.895 5.895 14 Si 0.987 3.013 15 H -0.253 1.253 16 H -0.261 1.261 17 H -0.246 1.246 18 C 0.110 3.890 19 C -0.141 4.141 20 C 0.151 3.849 21 C -0.196 4.196 22 O -0.562 6.562 23 H 0.032 0.968 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.098 0.902 27 H 0.042 0.958 28 H 0.111 0.889 29 H 0.064 0.936 30 H 0.298 0.702 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.344 13.357 -5.054 14.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.091 4.091 3 H 0.111 0.889 4 C -0.181 4.181 5 C -0.006 4.006 6 N -0.835 5.835 7 S 2.821 3.179 8 O -1.029 7.029 9 O -1.026 7.026 10 C -1.185 5.185 11 H 0.135 0.865 12 C -0.144 4.144 13 N -0.527 5.527 14 Si 0.805 3.195 15 H -0.177 1.177 16 H -0.186 1.186 17 H -0.170 1.170 18 C -0.014 4.014 19 C -0.180 4.180 20 C 0.111 3.889 21 C -0.254 4.254 22 O -0.370 6.370 23 H 0.052 0.948 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.116 0.884 27 H 0.061 0.939 28 H 0.129 0.871 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -4.318 12.827 -4.679 14.320 hybrid contribution 1.446 -0.986 0.199 1.761 sum -2.873 11.841 -4.480 12.982 Atomic orbital electron populations 1.21712 0.94509 1.00994 1.01992 1.19963 0.97128 1.00222 0.91822 0.88913 1.21470 0.96565 1.01239 0.98783 1.21335 0.92547 0.95861 0.90825 1.57179 1.77389 1.29311 1.19667 1.00185 0.75069 0.70666 0.71962 1.93303 1.68404 1.83612 1.57605 1.93286 1.89593 1.69944 1.49799 1.31143 1.26348 1.02899 1.58103 0.86505 1.26038 1.04693 0.92924 0.90738 1.69993 1.40474 1.01583 1.40639 0.85179 0.75341 0.79515 0.79503 1.17746 1.18557 1.16953 1.21765 0.98600 0.99930 0.81115 1.22436 0.92895 1.00144 1.02484 1.20336 0.88771 0.91595 0.88223 1.23142 1.01326 0.98590 1.02374 1.86493 1.52046 1.77345 1.21101 0.94839 0.91894 0.91516 0.88402 0.93888 0.87128 0.91715 0.89145 0.90935 0.90051 0.88753 0.87921 0.93635 0.93201 0.92156 0.76386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 8.46 71.98 0.61 -2.76 16 2 C -0.07 -1.91 1.89 -12.78 -0.02 -1.94 16 3 H 0.09 1.99 7.36 -2.39 -0.02 1.97 16 4 C -0.14 -4.37 4.53 29.40 0.13 -4.23 16 5 C 0.12 3.91 5.24 87.39 0.46 4.37 16 6 N -1.00 -38.73 1.75 -512.52 -0.90 -39.63 16 7 S 2.72 146.15 3.15 -56.49 -0.18 145.98 16 8 O -1.04 -61.99 15.93 -128.00 -2.04 -64.03 16 9 O -1.04 -60.64 15.03 -128.00 -1.92 -62.56 16 10 C -1.05 -58.65 9.75 67.73 0.66 -57.99 16 11 H 0.12 5.88 7.81 -2.91 -0.02 5.85 16 12 C 0.07 3.86 5.46 84.65 0.46 4.33 16 13 N -0.90 -54.17 13.19 21.45 0.28 -53.89 16 14 Si 0.99 41.44 29.54 68.60 2.03 43.47 16 15 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 16 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 17 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 18 C 0.11 3.48 5.51 86.49 0.48 3.95 16 19 C -0.14 -3.28 5.25 30.23 0.16 -3.12 16 20 C 0.15 4.14 0.86 -11.63 -0.01 4.13 16 21 C -0.20 -7.18 6.35 71.98 0.46 -6.72 16 22 O -0.56 -13.32 11.22 -148.98 -1.67 -14.99 16 23 H 0.03 0.94 8.10 -2.39 -0.02 0.92 16 24 H 0.06 1.35 8.07 -2.39 -0.02 1.33 16 25 H 0.07 1.60 7.22 -2.39 -0.02 1.58 16 26 H 0.10 2.50 8.06 -2.39 -0.02 2.48 16 27 H 0.04 1.67 5.63 -2.39 -0.01 1.65 16 28 H 0.11 2.64 8.07 -2.38 -0.02 2.62 16 29 H 0.06 2.31 7.68 -2.39 -0.02 2.29 16 30 H 0.30 16.20 8.31 -92.71 -0.77 15.43 16 31 H 0.07 2.61 5.77 -2.39 -0.01 2.60 16 32 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 33 H 0.09 1.80 7.32 -2.38 -0.02 1.79 16 34 H 0.10 1.87 7.89 -2.39 -0.02 1.85 16 35 H 0.05 1.93 1.48 -13.28 -0.02 1.91 16 36 H 0.05 1.79 8.11 -2.39 -0.02 1.77 16 37 H 0.06 2.25 6.58 -2.39 -0.02 2.24 16 38 H 0.39 6.55 8.91 -74.06 -0.66 5.89 16 Total: -1.00 -76.51 294.92 -0.62 -77.13 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 0.40 Total: 28.50 kcal Atomic # 6 Polarization: -63.37 SS G_CDS: 3.38 Total: -59.99 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -0.61 Total: -93.52 kcal Atomic # 8 Polarization: -135.95 SS G_CDS: -5.63 Total: -141.58 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 16 Polarization: 146.15 SS G_CDS: -0.18 Total: 145.98 kcal Total: -76.51 -0.62 -77.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951813.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.158 kcal (2) G-P(sol) polarization free energy of solvation -76.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds